sushi_fabric 1.0.2 → 1.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/sushi_fabric/sushiApp.rb +3 -1
- data/lib/sushi_fabric/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: b645fb8369eee1152493ef424f092cd00f0a5a08c27cb78d4b081e17c0b18784
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4
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data.tar.gz: 2630d702479d4eac533f737e226c80cbe115598d891eb526ec1f8e7004fc9481
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SHA512:
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6
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: a68e3cee864cc0cd12b5335b9d8d1eb8688175870455b61d4153109c8d98e5d77846d4ef87d50bec8c1dde624511cfde6b60de1110724b1878ccc19af91bd6ea
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7
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data.tar.gz: 331228ad3cebe41dbf0b6b921e2284d1030e2948f92b2ecebbc9955242ec3c47730b972e367947018114748e0fe9c65a6f9e3660896047684370b3f8fabfd8c5
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@@ -1,6 +1,6 @@
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#!/usr/bin/env ruby
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# encoding: utf-8
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-
# Version = '
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# Version = '20201218-155451'
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require 'csv'
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require 'fileutils'
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@@ -238,6 +238,7 @@ class SushiApp
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@params['scratch'] = nil
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@params['node'] = ''
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@params['queue'] = ''
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@params['partition'] = ''
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@params['process_mode'] = 'SAMPLE'
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@params['samples'] = ''
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@job_ids = []
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@@ -494,6 +495,7 @@ rm -rf #{@scratch_dir} || exit 1
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gsub_options = []
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gsub_options << "-c #{@params['cores']}" unless @params['cores'].to_s.empty?
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gsub_options << "-n #{@params['node']}" unless @params['node'].to_s.empty?
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gsub_options << "-p #{@params['partition']}" unless @params['partition'].to_s.empty?
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gsub_options << "-r #{@params['ram']}" unless @params['ram'].to_s.empty?
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gsub_options << "-s #{@params['scratch']}" unless @params['scratch'].to_s.empty?
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command = "wfm_monitoring --server #{WORKFLOW_MANAGER} --user #{@user} --project #{@project.gsub(/p/,'')} --logdir #{@gstore_script_dir} #{job_script} #{gsub_options.join(' ')}"
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data/lib/sushi_fabric/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: sushi_fabric
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version: !ruby/object:Gem::Version
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version: 1.0.
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version: 1.0.3
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platform: ruby
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authors:
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- Functional Genomics Center Zurich
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2020-
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date: 2020-12-18 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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