sushi_fabric 0.8.9 → 0.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/sushi_fabric/sushiApp.rb +8 -4
- data/lib/sushi_fabric/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 427128c3c395e175874c00dd5cdc0bd3a17a062c
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4
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data.tar.gz: c1adc24e9c0c02cb980bb772905e661673008a19
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 3a0bd9e974f7a85905b94e7fe537a766b13986f92d5d760753715522b2c9278f9d03c038832e568ad57eb61362e026544291d3410c57eccae84f9109bf5dcf0c
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7
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data.tar.gz: 41cbb1a4c7708d984b754b2fe6bd3e5d7c40f63e4126161f76b8f2050382cbd95f1d8379ba97edd1e4dbf90ddfddcd318f788fc4e43d661cbe0c8c08435886ce
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@@ -1,6 +1,6 @@
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#!/usr/bin/env ruby
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# encoding: utf-8
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# Version = '
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# Version = '20190104-191156'
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require 'csv'
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require 'fileutils'
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@@ -319,7 +319,9 @@ class SushiApp
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end
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def set_output_files
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@
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if @params['process_mode'] == 'SAMPLE'
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@dataset = {}
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end
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next_dataset.keys.select{|header| header.tag?('File')}.each do |header|
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@output_files ||= []
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@output_files << header
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@@ -520,7 +522,7 @@ rm -rf #{@scratch_dir} || exit 1
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@input_dataset_file = 'input_dataset.tsv'
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@next_dataset_file = 'dataset.tsv'
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@input_dataset_tsv_path = File.join(@gstore_result_dir, @input_dataset_file)
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@parameters_tsv_path = File.join(@gstore_result_dir, @
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@parameters_tsv_path = File.join(@gstore_result_dir, @parameter_file)
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@next_dataset_tsv_path = File.join(@gstore_result_dir, @next_dataset_file)
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end
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def save_parameters_as_tsv
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@@ -994,7 +996,9 @@ rm -rf #{@scratch_dir} || exit 1
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puts "\trequired : #{@required_params}"
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print 'check next dataset: '
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@
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if @params['process_mode'] == 'SAMPLE'
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@dataset={}
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end
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unless self.next_dataset
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err_msg = []
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err_msg << "\e[31mFAILURE\e[0m: next dataset is not set yet. you should overwrite SushiApp#next_dataset method in #{self.class}"
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data/lib/sushi_fabric/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: sushi_fabric
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version: !ruby/object:Gem::Version
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version: 0.
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version: 0.9.0
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platform: ruby
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authors:
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- Functional Genomics Center Zurich
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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date: 2019-01-04 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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