sufia 3.4.0 → 3.5.0
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- checksums.yaml +4 -4
- data/.travis.yml +6 -1
- data/Gemfile +7 -8
- data/README.md +13 -0
- data/SUFIA_VERSION +1 -1
- data/app/controllers/mailbox_controller.rb +8 -8
- data/app/jobs/ingest_local_file_job.rb +17 -13
- data/app/views/catalog/_home_text.html.erb +0 -3
- data/app/views/dashboard/_index_partials/_thumbnail_display.html.erb +5 -29
- data/app/views/mailbox/index.html.erb +9 -21
- data/app/views/users/_notify_link.html.erb +2 -17
- data/config/routes.rb +5 -3
- data/lib/sufia/files_controller_behavior.rb +45 -50
- data/lib/sufia/version.rb +1 -1
- data/lib/sufia/virus_found_error.rb +4 -0
- data/spec/controllers/generic_files_controller_spec.rb +14 -79
- data/spec/controllers/mailbox_controller_spec.rb +9 -13
- data/spec/features/users_spec.rb +0 -3
- data/spec/fixtures/sample_mpeg4.mp4 +0 -0
- data/spec/jobs/import_url_job_spec.rb +8 -8
- data/spec/jobs/ingest_local_file_job_spec.rb +13 -10
- data/spec/models/fits_datastream_spec.rb +72 -21
- data/spec/models/generic_file/actions_spec.rb +2 -17
- data/spec/models/generic_file/web_form_spec.rb +4 -3
- data/spec/models/generic_file_spec.rb +27 -0
- data/spec/routing/route_spec.rb +15 -20
- data/spec/spec_helper.rb +15 -2
- data/sufia-models/app/models/datastreams/fits_datastream.rb +10 -1
- data/sufia-models/lib/generators/sufia/models/install_generator.rb +1 -1
- data/sufia-models/lib/sufia/models/generic_file.rb +3 -0
- data/sufia-models/lib/sufia/models/generic_file/actions.rb +8 -11
- data/sufia-models/lib/sufia/models/generic_file/characterization.rb +19 -4
- data/sufia-models/lib/sufia/models/generic_file/virus_check.rb +33 -0
- data/sufia-models/lib/sufia/models/generic_file/web_form.rb +2 -3
- data/sufia-models/lib/sufia/models/jobs/import_url_job.rb +29 -31
- data/sufia-models/lib/sufia/models/version.rb +1 -1
- data/sufia.gemspec +1 -1
- data/tasks/sufia-dev.rake +2 -1
- metadata +10 -10
- data/app/assets/images/rails.png +0 -0
- data/app/assets/images/site_images/temp/guitar.jpg +0 -0
- data/app/assets/images/splashscreen.png +0 -0
- data/app/assets/images/video-still.png +0 -0
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 77cd255a8ab67cb2bcbd0bbfe17a9920d853251b
|
4
|
+
data.tar.gz: 528e7ca2aeb61cf7bcf5b10e370fcbfd8a51a1fc
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: acc4acc8293673da4aba37329ab6321be93241c9dfd2fd712a4bf5a3cf7218bfe25d5d6d8a99b1a45eb91934903dc31caacce9d7aa8311ebdfa9965075c5df4e
|
7
|
+
data.tar.gz: 656b6f49ed4a1a4a603cae1b40a3c9320ac42a3aa4e806ba228439442ba87168fa8e0ed2b60e7957014b9297d1221ca9e97ad77605379402f2ffa472af2f816b
|
data/.travis.yml
CHANGED
@@ -1,7 +1,12 @@
|
|
1
1
|
language: ruby
|
2
|
+
before_install:
|
3
|
+
- sudo apt-get install libclamav-dev clamav-data
|
2
4
|
rvm:
|
3
5
|
- "1.9.3"
|
4
6
|
- "2.0.0"
|
7
|
+
env:
|
8
|
+
global:
|
9
|
+
- NOKOGIRI_USE_SYSTEM_LIBRARIES=true
|
5
10
|
notifications:
|
6
11
|
email:
|
7
12
|
recipients:
|
@@ -16,4 +21,4 @@ notifications:
|
|
16
21
|
template:
|
17
22
|
- "%{repository}//%{branch}@%{commit} by %{author}: %{message} - %{build_url}"
|
18
23
|
services:
|
19
|
-
- redis-server
|
24
|
+
- redis-server
|
data/Gemfile
CHANGED
@@ -8,18 +8,17 @@ gem 'kaminari', github: 'harai/kaminari', branch: 'route_prefix_prototype'
|
|
8
8
|
gem 'sufia-models', path: './sufia-models'
|
9
9
|
|
10
10
|
group :development, :test do
|
11
|
+
gem 'devise'
|
12
|
+
# gem 'byebug'
|
13
|
+
gem 'clamav'
|
11
14
|
gem 'sqlite3'
|
12
|
-
gem '
|
13
|
-
gem '
|
14
|
-
gem '
|
15
|
-
gem 'database_cleaner'
|
16
|
-
gem 'capybara', '~>2.1.0'
|
17
|
-
gem 'bcrypt-ruby'
|
15
|
+
gem 'rspec-rails'
|
16
|
+
gem 'launchy' unless ENV['TRAVIS']
|
17
|
+
gem 'capybara'
|
18
18
|
gem "jettywrapper"
|
19
|
-
gem "factory_girl_rails"
|
19
|
+
gem "factory_girl_rails"
|
20
20
|
gem "devise"
|
21
21
|
gem 'jquery-rails'
|
22
|
-
gem 'sass-rails'
|
23
22
|
gem 'turbolinks'
|
24
23
|
gem "bootstrap-sass"
|
25
24
|
gem "simplecov", :require => false
|
data/README.md
CHANGED
@@ -146,3 +146,16 @@ rake fixtures
|
|
146
146
|
rake clean spec
|
147
147
|
bundle exec cucumber features
|
148
148
|
```
|
149
|
+
### Change validation behavior
|
150
|
+
|
151
|
+
To change what happens to files that fail validation add an after_validation hook
|
152
|
+
```
|
153
|
+
after_validation :dump_infected_files
|
154
|
+
|
155
|
+
def dump_infected_files
|
156
|
+
if Array(errors.get(:content)).any? { |msg| msg =~ /A virus was found/ }
|
157
|
+
content.content = errors.get(:content)
|
158
|
+
save
|
159
|
+
end
|
160
|
+
end
|
161
|
+
```
|
data/SUFIA_VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
3.
|
1
|
+
3.5.0
|
@@ -4,7 +4,7 @@ class MailboxController < ApplicationController
|
|
4
4
|
def index
|
5
5
|
if user_signed_in?
|
6
6
|
@messages = current_user.mailbox.inbox
|
7
|
-
|
7
|
+
@messages.each{|m| m.mark_as_read(current_user)}
|
8
8
|
else
|
9
9
|
@messages =[]
|
10
10
|
end
|
@@ -15,20 +15,20 @@ class MailboxController < ApplicationController
|
|
15
15
|
delete_message(msg)
|
16
16
|
end
|
17
17
|
empty_trash(current_user)
|
18
|
-
redirect_to sufia.
|
18
|
+
redirect_to sufia.notifications_path
|
19
19
|
end
|
20
20
|
|
21
|
-
def
|
22
|
-
if
|
23
|
-
msg = Conversation.find(params[:
|
21
|
+
def destroy
|
22
|
+
if current_user
|
23
|
+
msg = Conversation.find(params[:id])
|
24
24
|
if (msg.participants[0] == current_user) || (msg.participants[1] == current_user)
|
25
25
|
delete_message(msg)
|
26
26
|
empty_trash(msg.participants[0])
|
27
27
|
end
|
28
|
-
|
28
|
+
else
|
29
29
|
flash[:alert] = "You do not have privileges to delete the notification..."
|
30
|
-
|
31
|
-
|
30
|
+
end
|
31
|
+
redirect_to sufia.notifications_path
|
32
32
|
end
|
33
33
|
|
34
34
|
private
|
@@ -1,34 +1,38 @@
|
|
1
1
|
class IngestLocalFileJob
|
2
|
+
attr_accessor :directory, :filename, :user_key, :generic_file_id
|
3
|
+
|
2
4
|
def queue_name
|
3
5
|
:ingest
|
4
6
|
end
|
5
7
|
|
6
|
-
attr_accessor :directory, :filename, :user_key, :generic_file_id
|
7
|
-
|
8
8
|
def initialize(generic_file_id, directory, filename, user_key)
|
9
9
|
self.generic_file_id = generic_file_id
|
10
10
|
self.directory = directory
|
11
|
-
self.filename = filename
|
11
|
+
self.filename = filename
|
12
12
|
self.user_key = user_key
|
13
13
|
end
|
14
14
|
|
15
15
|
def run
|
16
|
-
filedata = File.new( File.join(directory, filename) )
|
17
|
-
generic_file = GenericFile.find(generic_file_id)
|
18
16
|
user = User.find_by_user_key(user_key)
|
19
17
|
raise "Unable to find user for #{user_key}" unless user
|
20
|
-
|
21
|
-
|
22
|
-
|
23
|
-
raise "Virus checking did not pass for #{File.basename(filedata.path)} status = #{virus_stat}" unless virus_stat == 0
|
24
|
-
|
18
|
+
generic_file = GenericFile.find(generic_file_id)
|
19
|
+
path = File.join(directory, filename)
|
20
|
+
|
25
21
|
generic_file.label = File.basename(filename)
|
26
|
-
generic_file.add_file(File.open(
|
22
|
+
generic_file.add_file(File.open(path), 'content', generic_file.label)
|
27
23
|
generic_file.record_version_committer(user)
|
28
24
|
generic_file.save!
|
29
25
|
|
30
|
-
|
26
|
+
FileUtils.rm(path)
|
31
27
|
Sufia.queue.push(ContentDepositEventJob.new(generic_file.pid, user_key))
|
32
|
-
|
28
|
+
# add message to user for downloaded file
|
29
|
+
message = "The file (#{File.basename(filename)}) was successfully deposited."
|
30
|
+
job_user.send_message(user, message, 'Local file ingest')
|
31
|
+
rescue => error
|
32
|
+
job_user.send_message(user, error.message, 'Local file ingest error')
|
33
|
+
end
|
34
|
+
|
35
|
+
def job_user
|
36
|
+
User.batchuser
|
33
37
|
end
|
34
38
|
end
|
@@ -1,6 +1,3 @@
|
|
1
|
-
<!--<h1>Getting Started</h1>
|
2
|
-
<img src="/assets/splashscreen.png" width="450" height="259" alt="just a place holder" />
|
3
|
-
<br/><br/> -->
|
4
1
|
<h2 class="heading1">What is <%=t('sufia.product_name') %>?</h2>
|
5
2
|
<p>
|
6
3
|
<%=t('sufia.product_name') %> is a secure repository service enabling the <%=t('sufia.institution_name') %> community to share its research and scholarly work with a worldwide audience.
|
@@ -1,31 +1,7 @@
|
|
1
|
-
|
2
|
-
|
3
|
-
|
4
|
-
Licensed under the Apache License, Version 2.0 (the "License");
|
5
|
-
you may not use this file except in compliance with the License.
|
6
|
-
You may obtain a copy of the License at
|
7
|
-
|
8
|
-
http://www.apache.org/licenses/LICENSE-2.0
|
9
|
-
|
10
|
-
Unless required by applicable law or agreed to in writing, software
|
11
|
-
distributed under the License is distributed on an "AS IS" BASIS,
|
12
|
-
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
13
|
-
See the License for the specific language governing permissions and
|
14
|
-
limitations under the License.
|
15
|
-
%>
|
16
|
-
|
17
|
-
<%- height = 42 if height.blank? -%>
|
18
|
-
<%- width = 36 if width.blank? -%>
|
19
|
-
<% if (document.mime_type) %>
|
20
|
-
<% if document.image? %>
|
21
|
-
<%= link_to image_tag(sufia.download_path(document["id"], {:datastream_id => 'thumbnail'}), {:width=>width}), sufia.generic_file_path(document.noid) %>
|
22
|
-
<% elsif document.pdf? %>
|
23
|
-
<%= link_to image_tag(sufia.download_path(document["id"], {:datastream_id => 'thumbnail'}), {:width=>width}),sufia.generic_file_path(document.noid) %>
|
24
|
-
<% elsif document.video? %>
|
25
|
-
<%= link_to image_tag(sufia.download_path(document["id"], {:datastream_id => 'thumbnail'}), {:width=>width}),sufia.generic_file_path(document.noid) %>
|
26
|
-
<% else %>
|
27
|
-
<%= link_to image_tag("/assets/default.png", {:width=>width}), sufia.generic_file_path(document) %>
|
28
|
-
<% end %>
|
1
|
+
<% width = 36 if width.blank? %>
|
2
|
+
<% if document.image? || document.pdf? || document.video? %>
|
3
|
+
<% path = sufia.download_path(document["id"], {datastream_id: 'thumbnail'}) %>
|
29
4
|
<% else %>
|
30
|
-
|
5
|
+
<% path = "/assets/default.png" %>
|
31
6
|
<% end %>
|
7
|
+
<%= link_to image_tag(path, {width: width}), sufia.generic_file_path(document) %>
|
@@ -1,21 +1,7 @@
|
|
1
|
-
<%#
|
2
|
-
Copyright © 2012 The Pennsylvania State University
|
3
|
-
|
4
|
-
Licensed under the Apache License, Version 2.0 (the "License");
|
5
|
-
you may not use this file except in compliance with the License.
|
6
|
-
You may obtain a copy of the License at
|
7
|
-
|
8
|
-
http://www.apache.org/licenses/LICENSE-2.0
|
9
|
-
|
10
|
-
Unless required by applicable law or agreed to in writing, software
|
11
|
-
distributed under the License is distributed on an "AS IS" BASIS,
|
12
|
-
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
13
|
-
See the License for the specific language governing permissions and
|
14
|
-
limitations under the License.
|
15
|
-
%>
|
16
|
-
|
17
1
|
<h1>User Notifications</h1>
|
18
|
-
|
2
|
+
<%= link_to raw('<i class="icon-trash icon-large"> </i>Delete All'),
|
3
|
+
sufia.delete_all_notifications_path, method: :delete, class: 'btn',
|
4
|
+
title: 'Delete all user notifications' %>
|
19
5
|
<div id="Data">
|
20
6
|
<table class="table table-striped">
|
21
7
|
<thead>
|
@@ -27,10 +13,12 @@ limitations under the License.
|
|
27
13
|
<tbody>
|
28
14
|
<% @messages.each do |msg| %>
|
29
15
|
<tr class="<%= cycle("","zebra") %>">
|
30
|
-
<td
|
31
|
-
<td
|
32
|
-
<td
|
33
|
-
|
16
|
+
<td><%= msg.last_message.subject.html_safe %></td>
|
17
|
+
<td><%= msg.last_message.body.html_safe %></td>
|
18
|
+
<td><%= link_to raw('<i class="icon-trash icon-large"></i>'),
|
19
|
+
sufia.notification_path(msg.id), :class=> 'itemicon itemtrash',
|
20
|
+
:title => 'Delete File', :method => :delete %>
|
21
|
+
</td>
|
34
22
|
</tr>
|
35
23
|
<% end %>
|
36
24
|
</tbody>
|
@@ -1,21 +1,6 @@
|
|
1
|
-
|
2
|
-
Copyright © 2012 The Pennsylvania State University
|
3
|
-
|
4
|
-
Licensed under the Apache License, Version 2.0 (the "License");
|
5
|
-
you may not use this file except in compliance with the License.
|
6
|
-
You may obtain a copy of the License at
|
7
|
-
|
8
|
-
http://www.apache.org/licenses/LICENSE-2.0
|
9
|
-
|
10
|
-
Unless required by applicable law or agreed to in writing, software
|
11
|
-
distributed under the License is distributed on an "AS IS" BASIS,
|
12
|
-
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
13
|
-
See the License for the specific language governing permissions and
|
14
|
-
limitations under the License.
|
15
|
-
%>
|
16
|
-
<a id="notify_link" href="<%= sufia.mailbox_path %>" class="icon-btn btn btn-small" title="click for User Notifications">
|
1
|
+
<%= link_to sufia.notifications_path, id: "notify_link", class: "icon-btn btn btn-small", title: "User Notifications" do %>
|
17
2
|
<%= render :partial => 'users/notify_number' %>
|
18
|
-
|
3
|
+
<% end %>
|
19
4
|
<div class='hide'>
|
20
5
|
<%= link_to "notify", sufia.user_notify_path, :remote => true, :id => 'notify_update_link' %>
|
21
6
|
</div>
|
data/config/routes.rb
CHANGED
@@ -27,9 +27,11 @@ Sufia::Engine.routes.draw do
|
|
27
27
|
resources :downloads, :only => "show"
|
28
28
|
|
29
29
|
# Messages
|
30
|
-
|
31
|
-
|
32
|
-
|
30
|
+
resources :notifications, only: [:destroy, :index], controller: :mailbox do
|
31
|
+
collection do
|
32
|
+
delete 'delete_all'
|
33
|
+
end
|
34
|
+
end
|
33
35
|
|
34
36
|
# User profile & follows
|
35
37
|
resources :users, only: [:index, :show, :edit, :update], as: :profiles
|
@@ -79,7 +79,7 @@ module Sufia
|
|
79
79
|
def create_from_url(params)
|
80
80
|
params[:dropbox_urls].each do |db_file|
|
81
81
|
next if db_file.blank?
|
82
|
-
# do not remove ::
|
82
|
+
# do not remove ::
|
83
83
|
@generic_file = ::GenericFile.new
|
84
84
|
@generic_file.import_url = db_file
|
85
85
|
@generic_file.label = File.basename(db_file)
|
@@ -90,27 +90,25 @@ module Sufia
|
|
90
90
|
end
|
91
91
|
|
92
92
|
def create_from_upload(params)
|
93
|
-
|
94
|
-
|
95
|
-
|
96
|
-
|
97
|
-
|
98
|
-
|
99
|
-
|
100
|
-
|
101
|
-
|
102
|
-
|
103
|
-
|
104
|
-
|
105
|
-
process_file(file)
|
106
|
-
end
|
107
|
-
rescue => error
|
108
|
-
logger.error "GenericFilesController::create rescued #{error.class}\n\t#{error.to_s}\n #{error.backtrace.join("\n")}\n\n"
|
109
|
-
json_error "Error occurred while creating generic file."
|
110
|
-
ensure
|
111
|
-
# remove the tempfile (only if it is a temp file)
|
112
|
-
file.tempfile.delete if file.respond_to?(:tempfile)
|
93
|
+
# check error condition No files
|
94
|
+
return json_error("Error! No file to save") if !params.has_key?(:files)
|
95
|
+
|
96
|
+
file = params[:files].detect {|f| f.respond_to?(:original_filename) }
|
97
|
+
if !file
|
98
|
+
json_error "Error! No file for upload", 'unknown file', :status => :unprocessable_entity
|
99
|
+
elsif (empty_file?(file))
|
100
|
+
json_error "Error! Zero Length File!", file.original_filename
|
101
|
+
elsif (!terms_accepted?)
|
102
|
+
json_error "You must accept the terms of service!", file.original_filename
|
103
|
+
else
|
104
|
+
process_file(file)
|
113
105
|
end
|
106
|
+
rescue => error
|
107
|
+
logger.error "GenericFilesController::create rescued #{error.class}\n\t#{error.to_s}\n #{error.backtrace.join("\n")}\n\n"
|
108
|
+
json_error "Error occurred while creating generic file."
|
109
|
+
ensure
|
110
|
+
# remove the tempfile (only if it is a temp file)
|
111
|
+
file.tempfile.delete if file.respond_to?(:tempfile)
|
114
112
|
end
|
115
113
|
|
116
114
|
# routed to /files/:id/citation
|
@@ -145,10 +143,8 @@ module Sufia
|
|
145
143
|
|
146
144
|
if params.has_key?(:filedata)
|
147
145
|
file = params[:filedata]
|
148
|
-
return unless virus_check(file) == 0
|
149
146
|
@generic_file.add_file(file, datastream_id, file.original_filename)
|
150
147
|
version_event = true
|
151
|
-
Sufia.queue.push(ContentNewVersionEventJob.new(@generic_file.pid, current_user.user_key))
|
152
148
|
end
|
153
149
|
|
154
150
|
# only update metadata if there is a generic_file object which is not the case for version updates
|
@@ -157,12 +153,20 @@ module Sufia
|
|
157
153
|
#always save the file so the new version or metadata gets recorded
|
158
154
|
if @generic_file.save
|
159
155
|
# do not trigger an update event if a version event has already been triggered
|
160
|
-
|
156
|
+
if version_event
|
157
|
+
Sufia.queue.push(ContentNewVersionEventJob.new(@generic_file.pid, current_user.user_key)) if params.has_key?(:filedata)
|
158
|
+
else
|
159
|
+
Sufia.queue.push(ContentUpdateEventJob.new(@generic_file.pid, current_user.user_key))
|
160
|
+
end
|
161
161
|
@generic_file.record_version_committer(current_user)
|
162
162
|
redirect_to sufia.edit_generic_file_path(:tab => params[:redirect_tab]), :notice => render_to_string(:partial=>'generic_files/asset_updated_flash', :locals => { :generic_file => @generic_file })
|
163
163
|
else
|
164
164
|
render action: 'edit'
|
165
165
|
end
|
166
|
+
rescue => error
|
167
|
+
flash[:error] = error.message
|
168
|
+
logger.error "GenericFilesController::update rescued #{error.class}\n\t#{error.message}\n #{error.backtrace.join("\n")}\n\n"
|
169
|
+
render action: 'edit'
|
166
170
|
end
|
167
171
|
|
168
172
|
protected
|
@@ -179,27 +183,26 @@ module Sufia
|
|
179
183
|
end
|
180
184
|
|
181
185
|
def process_file(file)
|
182
|
-
|
183
|
-
|
184
|
-
|
185
|
-
|
186
|
-
|
187
|
-
|
188
|
-
|
189
|
-
|
190
|
-
|
191
|
-
|
192
|
-
|
193
|
-
|
194
|
-
|
195
|
-
}
|
196
|
-
end
|
197
|
-
else
|
198
|
-
render :json => [{:error => "Error creating generic file."}]
|
186
|
+
@generic_file = ::GenericFile.new
|
187
|
+
update_metadata_from_upload_screen
|
188
|
+
create_metadata(@generic_file)
|
189
|
+
Sufia::GenericFile::Actions.create_content(@generic_file, file, file.original_filename, datastream_id, current_user)
|
190
|
+
respond_to do |format|
|
191
|
+
format.html {
|
192
|
+
render :json => [@generic_file.to_jq_upload],
|
193
|
+
:content_type => 'text/html',
|
194
|
+
:layout => false
|
195
|
+
}
|
196
|
+
format.json {
|
197
|
+
render :json => [@generic_file.to_jq_upload]
|
198
|
+
}
|
199
199
|
end
|
200
|
+
rescue ActiveFedora::RecordInvalid => af
|
201
|
+
flash[:error] = af.message
|
202
|
+
json_error "Error creating generic file: #{af.message}"
|
200
203
|
end
|
201
204
|
|
202
|
-
# override this method if you want to change how the terms are accepted on upload.
|
205
|
+
# override this method if you want to change how the terms are accepted on upload.
|
203
206
|
def terms_accepted?
|
204
207
|
params[:terms_of_service] == '1'
|
205
208
|
end
|
@@ -231,14 +234,6 @@ module Sufia
|
|
231
234
|
@generic_file.date_modified = DateTime.now
|
232
235
|
end
|
233
236
|
|
234
|
-
|
235
|
-
def virus_check( file)
|
236
|
-
stat = Sufia::GenericFile::Actions.virus_check(file)
|
237
|
-
flash[:error] = "Virus checking did not pass for #{File.basename(file.path)} status = #{stat}" unless stat == 0
|
238
|
-
stat
|
239
|
-
end
|
240
|
-
|
241
|
-
|
242
237
|
def create_metadata(file)
|
243
238
|
Sufia::GenericFile::Actions.create_metadata(file, current_user, params[:batch_id])
|
244
239
|
end
|
data/lib/sufia/version.rb
CHANGED