strain-code 0.3.11 → 0.4.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 3d58f651a19a791169bbda604bd4fa18d3d10874fb02ad5849fffb2f509b5719
-  data.tar.gz: 704bb4235a78d1d9f85077d45703e409a789e297c611870b2770b0d9b364e9d1
+  metadata.gz: 7e88171ba33da2d21304d3775a65587d5eff1433004c810cb0967d26c3fd97f4
+  data.tar.gz: e809e1b56e29da5be3fab50ade2fa9ada1503a4fd6e992d5e841d1cab18368bb
 SHA512:
-  metadata.gz: e692a2ffa8a83da90425b3c4ed2a74b2c8440434e367bc844c6fd6c842d8a40c339fa45118f5f6278cdb298354240ff6376a93db4ad6c5fa19c250c774e6c505
-  data.tar.gz: 6941837c007984b7ae598ee904c77ee50eeb43aa1c45b6c3e1e2223f43379a7d9d4ded03d73b4e414798ecf9823fc5af4f868ba05dea3af5754dff1a19d21aa2
+  metadata.gz: c49e95e5eb52a7ecb34357606ba85b47a7ca8e64059ee3a25646a04a1b69ac926d7a9cbee8840994c3b83a732e03cb297d9881df0326098c400fdc90b53870a6
+  data.tar.gz: f2f8390e5d6d8de91478e1bbae94a40690983b770be200e91d633f2387bd7cd6d7e1d392924b42f1889652b5a10bc533d87011be7baab9371d7f6eee557d0076

data/data/catalogues.yaml

@@ -5,6 +5,9 @@
 #   matches a catalogue code
 # - name_en: Name of the culture collection in English, if +name+ is spelled in
 #   a different language
+# - number_tr: A two-string array indicating that characters in the first list
+#   should be replaced by those in the second list prior to passing the number
+#   to the `url_pattern`
 # - organization: Name of the organization generating the catalogue. If a
 #   well-known acronym exists, this field should start with this acronym
 #   followed by colon (:) and the spelled-out name of the organization
@@ -116,6 +119,14 @@ catalogues:
     organization: Czech Academy of Sciences
     country_code: CZ
     url_pattern: "https://ccala.butbn.cas.cz/strain/%s"
+  - codes: [ CCAP ]
+    name: "Culture Collection of Algae & Protozoa"
+    organization: "SAMS: Scottish Association for Marine Science"
+    country_code: UK
+    url: "https://www.ccap.ac.uk/"
+    number_tr: ["/", "-"]
+    url_pattern: "https://www.ccap.ac.uk/catalogue/strain-%s"
+    _examples: [ CCAP 1460/5 ]
   - codes: [ CCM ]
     name: Czech Collection of Microorganisms
     organization: Masaryk University
@@ -389,7 +400,8 @@ catalogues:
     name: National Institute for Environmental Studies Collection
     organization: National Institute for Environmental Studies
     country_code: JP
-    url_pattern: "https://mcc.nies.go.jp/numberSearch.do?strainNumber=%s"
+    url: "https://mcc.nbrp.jp/index_en.html"
+    _examples: [ NIES 204 ]
   - codes: [ NRC, NRCC ]
     country_code: CA
     name: Division of Biological Sciences, National Research Council of Canada

data/lib/strain-code/catalogue.rb

@@ -26,7 +26,7 @@ class StrainCode::Catalogue
   end
 
   attr_accessor :codes, :country_code, :name, :name_en, :organization
-  attr_accessor :url, :url_pattern
+  attr_accessor :number_tr, :url, :url_pattern
 
   def initialize(hash)
     hash.each { |k, v| self.send("#{k}=", v) unless k =~ /^_/ }

data/lib/strain-code/number.rb

@@ -18,7 +18,10 @@ class StrainCode::Number
   end
 
   def url
-    catalogue.url_pattern % accession if catalogue&.url_pattern
+    return unless catalogue&.url_pattern && accession
+
+    acc = catalogue&.number_tr ? accession.tr(*catalogue.number_tr) : accession
+    catalogue.url_pattern % acc
   end
 
   def catalogue

data/lib/strain-code/version.rb

@@ -1,5 +1,5 @@
 class StrainCode
-  VERSION       = '0.3.11'
+  VERSION       = '0.4.0'
   VERSION_ARRAY = VERSION.split(/\./).map { |x| x.to_i } # :nodoc:
   VERSION_MAJOR = VERSION_ARRAY[0] # :nodoc:
   VERSION_MINOR = VERSION_ARRAY[1] # :nodoc:

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: strain-code
 version: !ruby/object:Gem::Version
-  version: 0.3.11
+  version: 0.4.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R