statsample 1.4.0 → 1.4.1

checksums.yaml

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data/.gitignore

@@ -0,0 +1,14 @@
+Gemfile.lock
+doc.yaml
+*.swp
+*.rbc
+coverage
+*~
+agregar_adsense_a_doc.rb
+pkg
+doc
+.yardoc
+examples/images/*
+examples/*.html
+web/upload_task.rb
+.idea

data/Gemfile

@@ -1,17 +1,2 @@
 source "https://www.rubygems.org"
-gem 'minitest'
-gem 'rdoc'
-gem 'mocha', '0.14.0' #:require=>'mocha/setup'
-gem 'shoulda','3.5.0'
-gem 'shoulda-matchers','2.2.0'
-gem 'hoe'
-#gem 'bio-statsample-timeseries'
-gem 'reportbuilder'
-gem 'dirty-memoize'
-gem 'distribution'
-gem 'extendmatrix'
-gem 'minimization'
-gem 'rserve-client'
-gem 'rubyvis'
-gem 'spreadsheet'
-gem 'rb-gsl'
+gemspec

data/History.txt

@@ -1,9 +1,14 @@
+=== 1.4.1 / 2015-03-26
+  * Removed Hoe gem in order to use `statsample.gemspec`.
+  * Improved readability of some files by using rubocop.
+  * Removed a bad check in `cronbach_alpha` (#10).
+
 === 1.4.0 / 2014-10-11
   * Replaced README.txt for README.md
   * Replace File.exists? for File.exist?
   + New Dataset.join to join two dataset based on some fields
   * Deleted MLE based regression (Probit and logistic). Now all GML methods are on statsample-glm
-  
+
 === 1.3.1 / 2014-06-26
 
   * Example referred to a SimpleRegression class which doesn't exist. Updated to working example.
@@ -23,7 +28,7 @@
   * open svg on mac osx
 
 === 1.2.0 / 2011-12-15
-  
+
   * Added support for time series (TimeSeries object): MA, EMA, MACD, acf, lag and delta. [Rob Britton]
   * Changed summary attribute to properly display 'b' value for simple linear regression [hstove]
   * Merge pull request #6 from hstove/patch-1Changed summary attribute to properly display 'b' value for simple linear regression [Claudio Bustos]
@@ -34,9 +39,9 @@
 * New Statsample::Anova::Contrast
 * Jacknife and bootstrap for Vector. Thanks to John Firebaugh for the idea
 * Improved Statsample::Analysis API
-* Updated CSV.read. Third argument is a Hash with options to CSV class  
+* Updated CSV.read. Third argument is a Hash with options to CSV class
 * Added restriction on Statsample::Excel.read
-* Updated spanish po 
+* Updated spanish po
 * Better summary for Vector
 * Improving summary of t related test (confidence interval and estimate output)
 * Replaced c for vector on Statsample::Analysis examples
@@ -51,7 +56,7 @@
 === 1.0.0 / 2011-01-27
 
 * Added Statsample::Analysis, a beautiful DSL to perform fast statistical analysis using statsample. See directory /examples
-* Created benchmarks directory 
+* Created benchmarks directory
 * Removed Distribution module from statsample and moved to a gem. Changes on code to reflect new API
 * Optimized simple regression.  Better library detection
 * New 'should_with_gsl' to test methods with gsl. Refactored Factor::MAP
@@ -62,17 +67,17 @@
 * Modified examples using Statsample::Analysis
 * Simplified eigen calculations
 * Updated some examples. Added correlation matrix speed suite
-* Correlation matrix optimized. Better specs 
-* Optimized correlation matrix. Use gsl matrix algebra or pairwise correlations depending on empiric calculated equations. See benchmarks/correlation_matrix.rb to see implementation of calculation 
+* Correlation matrix optimized. Better specs
+* Optimized correlation matrix. Use gsl matrix algebra or pairwise correlations depending on empiric calculated equations. See benchmarks/correlation_matrix.rb to see implementation of calculation
 * Moved tests fixtures from data to test/fixtures
 * Fixed some errors on tests
-* Bug fix: constant_se on binomial regression have an error 
-* All test should work on ruby 1.9.3 
+* Bug fix: constant_se on binomial regression have an error
+* All test should work on ruby 1.9.3
 * New Vector.[] and Vector.new_scale
-* Detect linearly dependent predictors on OLS. 
+* Detect linearly dependent predictors on OLS.
 
 === 0.18.0 / 2011-01-07
-* New Statsample.load_excel 
+* New Statsample.load_excel
 * New Statsample.load_csv
 * Statsample::Dataset#[] accepts an array of fields and uses clone
 * New Dataset#correlation_matrix  and Statsample::Dataset#covariance_matrix
@@ -83,19 +88,19 @@
 * Improved summary for PCA using covariance matrix
 * New attribute :label_angle for Statsample::Graph::Boxplot
 * Fixed Scatterplots scaling problems
-* New attributes for Scatterplots: groups, minimum_x, minimum_y, maximum_x, 
+* New attributes for Scatterplots: groups, minimum_x, minimum_y, maximum_x,
 * New Statsample::Multiset#union allows to create a new dataset based on a m
 * New Statsample::Multiset#each to traverse through datasets
 * Bug fix: Vector#standarized and Vector#percentile crash on nil data
 * Bug fix: Vector#mean and Vector#sd crash on data without valid values
 * Modified methods names on Statsample::Factor::PCA : feature_vector to feature_matrix, data_transformation to principal_components
 * Added Statsample::Vector.vector_centered
-* Factor::MAP.with_dataset() implemented 
-* Bug fix: Factor::MAP with correlation matrix with non-real eigenvalues crashes * Added documentation for Graph::Histogram 
+* Factor::MAP.with_dataset() implemented
+* Bug fix: Factor::MAP with correlation matrix with non-real eigenvalues crashes * Added documentation for Graph::Histogram
 * Added MPA to Reliability::MultiScaleAnalysis
-* Added custom names for returned vectors and datasets 
-* Updated spanish traslation 
-* Graph::Histogram updated. Custom x and y max and min, optional normal distribution drawing 
+* Added custom names for returned vectors and datasets
+* Updated spanish traslation
+* Graph::Histogram updated. Custom x and y max and min, optional normal distribution drawing
 * Updated Histogram class, with several new methods compatibles with GSL::Histogram
 
 === 0.17.0 / 2010-12-09
@@ -106,18 +111,18 @@
 
 === 0.16.0 / 2010-11-13
 * Works on ruby 1.9.2 and HEAD. Updated Rakefile and manifest
-* Removed all graph based on Svg::Graph. 
+* Removed all graph based on Svg::Graph.
 * First operative version of Graph with Rubyvis
-* Corrected bug on Distribution::Normal.cdf. 
+* Corrected bug on Distribution::Normal.cdf.
 * Added reference on references.txt
 * Ruby-based random gaussian distribution generator when gsl not available
 * Added population average deviation [Al Chou]
 
 === 0.15.1 / 2010-10-20
-* Statsample::Excel and Statsample::PlainText add name to vectors equal to field name 
+* Statsample::Excel and Statsample::PlainText add name to vectors equal to field name
 * Statsample::Dataset.delete_vector accept multiple fields.
-* Statsample::Dataset.dup_only_valid allows duplication of specific fields 
-* ScaleAnalysis doesn't crash on one-item scales 
+* Statsample::Dataset.dup_only_valid allows duplication of specific fields
+* ScaleAnalysis doesn't crash on one-item scales
 * Updated references
 
 === 0.15.0 / 2010-09-07
@@ -126,14 +131,14 @@
 * Added Spearman-Brown prophecy on Reliability module
 * Distribution::F uses Gsl when available
 * Added mean r.p.b. and item sd on Scale Analysis
-* Corrected bug on Vector.ary_method and example of Anova Two Way using vector.  
+* Corrected bug on Vector.ary_method and example of Anova Two Way using vector.
 
 
 === 0.14.1 / 2010-08-18
 
-* Added extra information on $DEBUG=true. 
-* Changed ParallelAnalysis: with_random_data parameters, bootstrap_method options are data and random, resolve bug related to number of factors to preserve, resolved bug related to original eigenvalues, can support failed bootstrap of data for Tetrachoric  correlation. 
-* Optimized eigenpairs on Matrix when GSL is available. 
+* Added extra information on $DEBUG=true.
+* Changed ParallelAnalysis: with_random_data parameters, bootstrap_method options are data and random, resolve bug related to number of factors to preserve, resolved bug related to original eigenvalues, can support failed bootstrap of data for Tetrachoric  correlation.
+* Optimized eigenpairs on Matrix when GSL is available.
 * Added test for parallel analysis using data bootstraping
 * Updated .pot and Manifest.txt
 * Added test for kmo(global and univariate), bartlett and anti-image. Kmo and Bartlett have test based on Dziuban and Shirkey with correct results
@@ -142,16 +147,16 @@
 * Added reference for Statsample::Factor::MAP
 
 === 0.14.0 / 2010-08-16
-* Added Statsample::Factor::MAP, to execute Velicer's (1976) MAP to determine the number of factors to retain on EFA 
+* Added Statsample::Factor::MAP, to execute Velicer's (1976) MAP to determine the number of factors to retain on EFA
 * Bug fix on test suite on Ruby 1.8.7
 * Horn's Parallel Analysis operational and tested for pure random data
-* Fixed bug on Excel writer on Ruby1.9 (frozen string on header raises an error). 
+* Fixed bug on Excel writer on Ruby1.9 (frozen string on header raises an error).
 * Extra information on Factorial Analysis on summaries
-* Fixed bug on Factor::Rotation when used ::Matrix without field method. 
+* Fixed bug on Factor::Rotation when used ::Matrix without field method.
 * Added Vector#vector_percentil method
-* Summaries for PCA, Rotation, MultiScale and ScaleAnalysis created or improved. 
+* Summaries for PCA, Rotation, MultiScale and ScaleAnalysis created or improved.
 * Factor::PCA could have rotation and parallel analysis on summary.
-* Cronbach's alpha from covariance matrix raise an error on size<2 
+* Cronbach's alpha from covariance matrix raise an error on size<2
 * MultiScaleAnalysis could have Parallel Analysis on summary.
 * Added Chi Square test
 * Added new information on README.txt
@@ -168,7 +173,7 @@
 
 * Polychoric and Tetrachoric moved to gem statsample-bivariate-extension
 * All classes left with summary method include Summarizable now. Every method which return localizable string is now parsed with _()
-* Correct implementation of Reliability::MultiScaleAnalysis. 
+* Correct implementation of Reliability::MultiScaleAnalysis.
 * Spanish translation for Mann-Whitney's U
 * Added example for Mann-Whitney's U test
 * Better summary for Mann-Whitney's U Test
@@ -179,10 +184,10 @@
 
 * Modified Rakefile to remove dependencies based on C extensions. These are moved to statsample-optimization
 * T test with unequal variance fixed on i686
-* API Change: Renamed Reliability::ItemAnalysis and moved to independent file 
+* API Change: Renamed Reliability::ItemAnalysis and moved to independent file
 * New Reliability::MultiScaleAnalysis for easy analysis of scales on a same survey, includind reliability, correlation matrix and Factor Analysis
 * Updated README to reflect changes on Reliability module
-* SvgGraph works with reportbuilder. 
+* SvgGraph works with reportbuilder.
 * Added methods on Polychoric based on Olsson(1979): the idea is estimate using second derivatives.
 * Distribution test changed (reduced precision on 32 bits system
 
@@ -196,7 +201,7 @@
 <b>New features:</b>
 * Added Statsample::Anova::TwoWay and Statsample::Anova::TwoWayWithVectors
 * Added Statsample.clone_only valid and Statsample::Dataset.clone_only_valid, for cheap copy on already clean vectors
-<b>Optimizations and bug fix</b> 
+<b>Optimizations and bug fix</b>
 * Removed library statistics2 from package. Used gem statistics2 instead, because have a extension version
 * Added example for Reliability class
 * Bug fix on Statsample::DominanceAnalysis
@@ -204,7 +209,7 @@
 === 0.10.0 / 2010-04-13
 
 <b>API modifications</b>
-* Refactoring of Statsample::Anova module. 
+* Refactoring of Statsample::Anova module.
   * Statsample::Anova::OneWay :implementation of generic ANOVA One-Way, used by Multiple Regression, for example.
   * Statsample::Anova::OneWayWithVectors: implementation of ANOVA One-Way to test differences of means.
 
@@ -228,7 +233,7 @@
 === 0.8.1 / 2010-03-29
 * Fixed Regression summaries
 === 0.8.0 / 2010-03-29
-* New Statsample::Test::T module, with classes and methods to do Student's t tests for one and two samples. 
+* New Statsample::Test::T module, with classes and methods to do Student's t tests for one and two samples.
 * Statsample::PromiseAfter module to set a number of variables without explicitly call the compute or iterate method
 * All tests ported to MiniUnit
 * Directory 'demo' renamed to 'examples'
@@ -266,7 +271,7 @@
 
 
 === 0.6.4 / 2010-02-19
-* Dominance Analysis and Dominance Analysis Bootstrap allows multivariate dependent analysis. 
+* Dominance Analysis and Dominance Analysis Bootstrap allows multivariate dependent analysis.
 * Test suite for Dominance Analysis, using Azen and Budescu papers as references
 * X^2 for polychoric correlation
 
@@ -285,12 +290,12 @@
 * New Statsample::Factor module. Include classes for extracting factors (Statsample::Factor::PCA and  Statsample::Factor::PrincipalAxis) and rotate component matrix  ( Statsample::Factor::Rotation subclasses). For now, only orthogonal rotations
 * New Statsample::Dataset.crosstab_with_asignation, Statsample::Dataset.one_to_many
 * New class Statsample::Permutation to produce permutations of a given array
-* New class Statsample::Histogram, with same interface as GSL one 
+* New class Statsample::Histogram, with same interface as GSL one
 * New class Statsample::Test::UMannWhitney, to perform Mann-Whitney's U test. Gives z based and exact calculation of probability
 * Improved support for ReportBuilder
 * Statsample::Codification module reworked
 * Fixed bugs on Dominance Analysis classes
-* Fixed bugs on Statsample::Vector.kurtosis and Statsample::Vector.skew 
+* Fixed bugs on Statsample::Vector.kurtosis and Statsample::Vector.skew
 
 === 0.5.1 / 2009-10-06
 
@@ -354,15 +359,15 @@
 
 * One Way Anova on Statsample::Anova::OneWay
 * Dominance Analysis!!!! The one and only reason to develop a Multiple Regression on pure ruby.
-* Multiple Regression on Multiple Regression module. Pairwise (pure ruby) or MultipleRegressionPairwise and Listwise (optimized) on MultipleRegressionAlglib and 
+* Multiple Regression on Multiple Regression module. Pairwise (pure ruby) or MultipleRegressionPairwise and Listwise (optimized) on MultipleRegressionAlglib and
 * New Dataset#to_gsl_matrix, #from_to,#[..],#bootstrap,#vector_missing_values, #vector_count_characters, #each_with_index, #collect_with_index
 * New Vector#box_cox_transformation
 * Module Correlation renamed to Bivariate
 * Some fancy methods and classes to create Summaries
 * Some documentation about Algorithm used on doc_latex
 * Deleted 'distributions' extension. Ruby/GSL has all the pdf and cdf you ever need.
-* Tests work without any dependency. Only nags about missing deps. 
-* Test for MultipleRegression, Anova, Excel, Bivariate.correlation_matrix and many others 
+* Tests work without any dependency. Only nags about missing deps.
+* Test for MultipleRegression, Anova, Excel, Bivariate.correlation_matrix and many others
 
 === 0.1.9 / 2009-05-22
 
@@ -372,8 +377,8 @@
 * Module SRS: New methods estimation_n0 and estimation_n
 * Module Reliability: new ItemCharacteristicCurve class
 * New HtmlReport class
-* New experimental SPSS Class. 
-* Converters: Module CSV with new options. Added write() method for GGobi module 
+* New experimental SPSS Class.
+* Converters: Module CSV with new options. Added write() method for GGobi module
 * New Mx exporter (http://www.vcu.edu/mx/)
 * Class SimpleRegression: new methods standard error
 
@@ -404,7 +409,7 @@
 === 0.1.4 / 2008-08-27
 
 * New extension, with cdf functions for
-  chi-square, t, gamma and normal distributions. 
+  chi-square, t, gamma and normal distributions.
   Based on dcdflib (http://www.netlib.org/random/)
   Also, has a function to calculate the tail for a noncentral T distribution
 

data/LICENSE.txt

@@ -1,87 +1,12 @@
-GNU GENERAL PUBLIC LICENSE
-**************************
+Copyright (c) 2009-2015, Claudio Bustos
+All rights reserved.
 
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-12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. 
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