statsample 0.4.1 → 0.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/History.txt +4 -0
- data/Manifest.txt +3 -1
- data/lib/statsample.rb +175 -179
- data/lib/statsample/codification.rb +1 -1
- data/lib/statsample/converter/csv18.rb +56 -0
- data/lib/statsample/converter/csv19.rb +60 -0
- data/lib/statsample/converters.rb +26 -75
- data/lib/statsample/dataset.rb +38 -29
- data/lib/statsample/dominanceanalysis.rb +6 -6
- data/lib/statsample/graph/gdchart.rb +2 -1
- data/lib/statsample/graph/svggraph.rb +10 -9
- data/lib/statsample/multiset.rb +3 -3
- data/lib/statsample/regression/multiple.rb +43 -271
- data/lib/statsample/regression/multiple/baseengine.rb +235 -0
- data/lib/statsample/regression/multiple/gslengine.rb +2 -2
- data/lib/statsample/vector.rb +754 -736
- data/test/test_csv.rb +3 -4
- data/test/test_dataset.rb +22 -3
- data/test/test_distribution.rb +4 -3
- data/test/test_ggobi.rb +2 -2
- data/test/test_regression.rb +11 -2
- data/test/test_svg_graph.rb +0 -1
- data/test/test_vector.rb +50 -5
- data/test/test_xls.rb +2 -4
- metadata +5 -3
- data/test/_test_chart.rb +0 -58
    
        data/lib/statsample/vector.rb
    CHANGED
    
    | @@ -1,33 +1,39 @@ | |
| 1 1 | 
             
            class Array
         | 
| 2 | 
            +
                # Creates a new Statsample::Vector object
         | 
| 3 | 
            +
                # Argument should be equal to Vector.new
         | 
| 2 4 | 
             
            	def to_vector(*args)
         | 
| 3 5 | 
             
            		Statsample::Vector.new(self,*args)
         | 
| 4 6 | 
             
            	end
         | 
| 7 | 
            +
                # Creates a new Statsample::Vector object of type :scale
         | 
| 8 | 
            +
                def to_scale(*args)
         | 
| 9 | 
            +
                    Statsample::Vector.new(self,:scale,*args)
         | 
| 10 | 
            +
                end
         | 
| 5 11 | 
             
            end
         | 
| 6 12 |  | 
| 7 13 | 
             
            module Statsample
         | 
| 8 14 | 
             
                class << self
         | 
| 9 | 
            -
             | 
| 10 | 
            -
             | 
| 11 | 
            -
             | 
| 12 | 
            -
             | 
| 13 | 
            -
             | 
| 14 | 
            -
             | 
| 15 | 
            -
             | 
| 16 | 
            -
             | 
| 17 | 
            -
             | 
| 18 | 
            -
             | 
| 19 | 
            -
             | 
| 20 | 
            -
             | 
| 21 | 
            -
             | 
| 22 | 
            -
             | 
| 23 | 
            -
             | 
| 24 | 
            -
             | 
| 15 | 
            +
                    # Create a matrix using vectors as columns.
         | 
| 16 | 
            +
                    # Use:
         | 
| 17 | 
            +
                    #
         | 
| 18 | 
            +
                    #   matrix=Statsample.vector_cols_matrix(v1,v2)
         | 
| 19 | 
            +
                    def vector_cols_matrix(*vs)
         | 
| 20 | 
            +
                        # test
         | 
| 21 | 
            +
                        size=vs[0].size
         | 
| 22 | 
            +
                        vs.each{|v|
         | 
| 23 | 
            +
                            raise ArgumentError,"Arguments should be Vector" unless v.instance_of? Statsample::Vector
         | 
| 24 | 
            +
                            raise ArgumentError,"Vectors size should be the same" if v.size!=size
         | 
| 25 | 
            +
                        }
         | 
| 26 | 
            +
                        Matrix.rows((0...size).to_a.collect() {|i|
         | 
| 27 | 
            +
                            vs.collect{|v| v[i]}
         | 
| 28 | 
            +
                        })
         | 
| 29 | 
            +
                    end
         | 
| 30 | 
            +
                end
         | 
| 25 31 | 
             
            	# Returns a duplicate of the input vectors, without missing data
         | 
| 26 32 | 
             
            	# for any of the vectors.
         | 
| 27 33 | 
             
            	# 
         | 
| 28 | 
            -
            	#  a=[1,2,3,6,7,nil,3,5]. | 
| 29 | 
            -
            	#  b=[nil,nil,5,6,4,5,10,2]. | 
| 30 | 
            -
            	#  c=[2,4,6,7,4,5,6,7]. | 
| 34 | 
            +
            	#  a=[1,2,3,6,7,nil,3,5].to_scale
         | 
| 35 | 
            +
            	#  b=[nil,nil,5,6,4,5,10,2].to_scale
         | 
| 36 | 
            +
            	#  c=[2,4,6,7,4,5,6,7].to_scale
         | 
| 31 37 | 
             
            	#  a2,b2,c2=Statsample.only_valid(a,b,c)
         | 
| 32 38 | 
             
            	#  => [#<Statsample::Scale:0xb748c8c8 @data=[3, 6, 7, 3, 5]>, 
         | 
| 33 39 | 
             
            	#        #<Statsample::Scale:0xb748c814 @data=[5, 6, 4, 10, 2]>, 
         | 
| @@ -40,8 +46,13 @@ module Statsample | |
| 40 46 | 
             
            		ds.vectors.values
         | 
| 41 47 | 
             
            	end
         | 
| 42 48 |  | 
| 43 | 
            -
            class Vector
         | 
| 49 | 
            +
                class Vector
         | 
| 44 50 | 
             
                include Enumerable
         | 
| 51 | 
            +
                include Writable
         | 
| 52 | 
            +
                    DEFAULT_OPTIONS={
         | 
| 53 | 
            +
                    :missing_values=>[],
         | 
| 54 | 
            +
                    :labels=>{}
         | 
| 55 | 
            +
                }
         | 
| 45 56 | 
             
                # Level of measurement. Could be :nominal, :ordinal or :scale
         | 
| 46 57 | 
             
                attr_reader :type
         | 
| 47 58 | 
             
                # Original data. 
         | 
| @@ -60,788 +71,795 @@ class Vector | |
| 60 71 | 
             
                attr_accessor :labels
         | 
| 61 72 | 
             
                # Creates a new Vector object.
         | 
| 62 73 | 
             
                # [data]            Array of data.
         | 
| 63 | 
            -
                # [type]            Level of meausurement. See Vector#type | 
| 64 | 
            -
                # [ | 
| 65 | 
            -
                # | 
| 74 | 
            +
                # [type]            Level of meausurement. See Vector#type
         | 
| 75 | 
            +
                # [opts]            Options
         | 
| 76 | 
            +
                #   [:missing_values]  Array of missing values. See Vector#missing_values
         | 
| 77 | 
            +
                #   [:labels]          Labels for data values
         | 
| 66 78 | 
             
                #
         | 
| 67 | 
            -
                # The fast way to create a vector uses Array | 
| 68 | 
            -
                # to include as the first argument the level of measurement 
         | 
| 79 | 
            +
                # The fast way to create a vector uses Array.to_vector or Array.to_scale.
         | 
| 69 80 | 
             
                #
         | 
| 70 81 | 
             
                #  v=[1,2,3,4].to_vector(:scale)
         | 
| 82 | 
            +
                #  v=[1,2,3,4].to_scale
         | 
| 71 83 | 
             
                #
         | 
| 72 | 
            -
             | 
| 73 | 
            -
             | 
| 74 | 
            -
             | 
| 75 | 
            -
             | 
| 76 | 
            -
             | 
| 77 | 
            -
             | 
| 78 | 
            -
             | 
| 79 | 
            -
             | 
| 80 | 
            -
             | 
| 81 | 
            -
             | 
| 82 | 
            -
             | 
| 83 | 
            -
             | 
| 84 | 
            -
             | 
| 85 | 
            -
             | 
| 86 | 
            -
                     | 
| 87 | 
            -
             | 
| 88 | 
            -
             | 
| 89 | 
            -
             | 
| 90 | 
            -
             | 
| 91 | 
            -
             | 
| 92 | 
            -
                     | 
| 93 | 
            -
             | 
| 94 | 
            -
             | 
| 95 | 
            -
             | 
| 96 | 
            -
             | 
| 97 | 
            -
                     | 
| 98 | 
            -
             | 
| 99 | 
            -
             | 
| 100 | 
            -
             | 
| 101 | 
            -
                     | 
| 102 | 
            -
             | 
| 103 | 
            -
             | 
| 104 | 
            -
             | 
| 105 | 
            -
             | 
| 106 | 
            -
             | 
| 107 | 
            -
             | 
| 108 | 
            -
                     | 
| 109 | 
            -
             | 
| 110 | 
            -
             | 
| 111 | 
            -
             | 
| 112 | 
            -
             | 
| 113 | 
            -
             | 
| 114 | 
            -
             | 
| 115 | 
            -
             | 
| 116 | 
            -
             | 
| 117 | 
            -
             | 
| 118 | 
            -
                            else
         | 
| 119 | 
            -
                                nil
         | 
| 120 | 
            -
                            end
         | 
| 121 | 
            -
                        }.to_vector(:scale)
         | 
| 122 | 
            -
                    end
         | 
| 123 | 
            -
                    
         | 
| 124 | 
            -
                    alias_method :standarized, :vector_standarized
         | 
| 125 | 
            -
                    
         | 
| 126 | 
            -
                    def box_cox_transformation(lambda) # :nodoc:
         | 
| 127 | 
            -
                        raise "Should be a scale" unless @type==:scale
         | 
| 128 | 
            -
                        @data_with_nils.collect{|x|
         | 
| 84 | 
            +
             | 
| 85 | 
            +
                def initialize(data=[], t=:nominal, opts=Hash.new)
         | 
| 86 | 
            +
                    raise "Data should be an array" unless data.is_a? Array
         | 
| 87 | 
            +
                    @data=data
         | 
| 88 | 
            +
                    @type=t
         | 
| 89 | 
            +
                    opts=DEFAULT_OPTIONS.merge(opts)
         | 
| 90 | 
            +
                    @missing_values=opts[:missing_values]
         | 
| 91 | 
            +
                    @labels=opts[:labels]
         | 
| 92 | 
            +
                    @valid_data=[]
         | 
| 93 | 
            +
                    @data_with_nils=[]
         | 
| 94 | 
            +
                    @missing_data=[]
         | 
| 95 | 
            +
                    @has_missing_data=nil
         | 
| 96 | 
            +
                    @scale_data=nil
         | 
| 97 | 
            +
                    set_valid_data_intern
         | 
| 98 | 
            +
                    self.type=t
         | 
| 99 | 
            +
                end
         | 
| 100 | 
            +
                # Creates a duplicate of the Vector.
         | 
| 101 | 
            +
                # Note: data, missing_values and labels are duplicated, so
         | 
| 102 | 
            +
                # changes on original vector doesn't propages to copies.
         | 
| 103 | 
            +
                def dup
         | 
| 104 | 
            +
                    Vector.new(@data.dup,@type, :missing_values => @missing_values.dup, :labels => @labels.dup)
         | 
| 105 | 
            +
                end
         | 
| 106 | 
            +
                # Returns an empty duplicate of the vector. Maintains the type,
         | 
| 107 | 
            +
                # missing values and labels.
         | 
| 108 | 
            +
                def dup_empty
         | 
| 109 | 
            +
                    Vector.new([],@type, :missing_values => @missing_values.dup, :labels => @labels.dup)
         | 
| 110 | 
            +
                end
         | 
| 111 | 
            +
                # Raises an exception if type of vector is inferior to t type
         | 
| 112 | 
            +
                def check_type(t)
         | 
| 113 | 
            +
                    raise NoMethodError if (t==:scale and @type!=:scale) or (t==:ordinal and @type==:nominal)
         | 
| 114 | 
            +
                end
         | 
| 115 | 
            +
                private :check_type
         | 
| 116 | 
            +
                
         | 
| 117 | 
            +
                # Return a vector usign the standarized values for data
         | 
| 118 | 
            +
                # with sd with denominator N
         | 
| 119 | 
            +
                def vector_standarized_pop
         | 
| 120 | 
            +
                    vector_standarized(true)
         | 
| 121 | 
            +
                end
         | 
| 122 | 
            +
                # Return a vector usign the standarized values for data
         | 
| 123 | 
            +
                # with sd with denominator n-1
         | 
| 124 | 
            +
                
         | 
| 125 | 
            +
                def vector_standarized(use_population=false)
         | 
| 126 | 
            +
                    raise "Should be a scale" unless @type==:scale
         | 
| 127 | 
            +
                    m=mean
         | 
| 128 | 
            +
                    sd=use_population ? sdp : sds
         | 
| 129 | 
            +
                    @data_with_nils.collect{|x|
         | 
| 129 130 | 
             
                        if !x.nil?
         | 
| 130 | 
            -
                             | 
| 131 | 
            -
                                Math.log(x)
         | 
| 132 | 
            -
                            else
         | 
| 133 | 
            -
                                (x**lambda-1).quo(lambda)
         | 
| 134 | 
            -
                            end
         | 
| 131 | 
            +
                            (x.to_f - m).quo(sd)
         | 
| 135 132 | 
             
                        else
         | 
| 136 133 | 
             
                            nil
         | 
| 137 134 | 
             
                        end
         | 
| 138 | 
            -
             | 
| 135 | 
            +
                    }.to_vector(:scale)
         | 
| 136 | 
            +
                end
         | 
| 137 | 
            +
                
         | 
| 138 | 
            +
                alias_method :standarized, :vector_standarized
         | 
| 139 | 
            +
                
         | 
| 140 | 
            +
                def box_cox_transformation(lambda) # :nodoc:
         | 
| 141 | 
            +
                    raise "Should be a scale" unless @type==:scale
         | 
| 142 | 
            +
                    @data_with_nils.collect{|x|
         | 
| 143 | 
            +
                    if !x.nil?
         | 
| 144 | 
            +
                        if(lambda==0)
         | 
| 145 | 
            +
                            Math.log(x)
         | 
| 146 | 
            +
                        else
         | 
| 147 | 
            +
                            (x**lambda-1).quo(lambda)
         | 
| 148 | 
            +
                        end
         | 
| 149 | 
            +
                    else
         | 
| 150 | 
            +
                        nil
         | 
| 139 151 | 
             
                    end
         | 
| 140 | 
            -
                    
         | 
| 141 | 
            -
             | 
| 142 | 
            -
             | 
| 143 | 
            -
             | 
| 144 | 
            -
             | 
| 145 | 
            -
             | 
| 152 | 
            +
                    }.to_vector(:scale)
         | 
| 153 | 
            +
                end
         | 
| 154 | 
            +
                
         | 
| 155 | 
            +
                # Vector equality.
         | 
| 156 | 
            +
                # Two vector will be the same if their data, missing values, type, labels are equals
         | 
| 157 | 
            +
                def ==(v2)
         | 
| 158 | 
            +
                    raise TypeError,"Argument should be a Vector" unless v2.instance_of? Statsample::Vector
         | 
| 159 | 
            +
                    @data==v2.data and @missing_values==v2.missing_values and @type==v2.type and @labels=v2.labels
         | 
| 160 | 
            +
                end
         | 
| 161 | 
            +
                
         | 
| 162 | 
            +
                def _dump(i) # :nodoc:
         | 
| 163 | 
            +
                    Marshal.dump({'data'=>@data,'missing_values'=>@missing_values, 'labels'=>@labels, 'type'=>@type})
         | 
| 164 | 
            +
                end
         | 
| 165 | 
            +
                
         | 
| 166 | 
            +
                def self._load(data) # :nodoc:
         | 
| 167 | 
            +
                    h=Marshal.load(data)
         | 
| 168 | 
            +
                    Vector.new(h['data'], h['type'],:missing_values=> h['missing_values'], :labels=>h['labels'])
         | 
| 169 | 
            +
                end
         | 
| 170 | 
            +
                # Returns a new vector, with data modified by block.
         | 
| 171 | 
            +
                # Equivalent to create a Vector after #collect on data 
         | 
| 172 | 
            +
                def recode
         | 
| 173 | 
            +
                    @data.collect{|x|
         | 
| 174 | 
            +
                        yield x
         | 
| 175 | 
            +
                    }.to_vector(@type)
         | 
| 176 | 
            +
                end
         | 
| 177 | 
            +
                # Modifies current vector, with data modified by block.
         | 
| 178 | 
            +
                # Equivalent to #collect! on @data 
         | 
| 179 | 
            +
                def recode!
         | 
| 180 | 
            +
                    @data.collect!{|x|
         | 
| 181 | 
            +
                        yield x
         | 
| 182 | 
            +
                    }
         | 
| 183 | 
            +
                    set_valid_data
         | 
| 184 | 
            +
                end
         | 
| 185 | 
            +
                # Iterate on each item.
         | 
| 186 | 
            +
                # Equivalent to
         | 
| 187 | 
            +
                #   @data.each{|x| yield x}
         | 
| 188 | 
            +
                def each
         | 
| 189 | 
            +
                    @data.each{|x| yield(x) }
         | 
| 190 | 
            +
                end
         | 
| 191 | 
            +
                
         | 
| 192 | 
            +
                # Iterate on each item, retrieving index
         | 
| 193 | 
            +
                
         | 
| 194 | 
            +
                def each_index
         | 
| 195 | 
            +
                    (0...@data.size).each {|i|
         | 
| 196 | 
            +
                        yield(i)
         | 
| 197 | 
            +
                    }
         | 
| 198 | 
            +
                end
         | 
| 199 | 
            +
                # Add a value at the end of the vector.
         | 
| 200 | 
            +
                # If second argument set to false, you should update the Vector usign
         | 
| 201 | 
            +
                # Vector.set_valid_data at the end of your insertion cycle
         | 
| 202 | 
            +
                #
         | 
| 203 | 
            +
                def add(v,update_valid=true)
         | 
| 204 | 
            +
                    @data.push(v)
         | 
| 205 | 
            +
                    set_valid_data if update_valid
         | 
| 206 | 
            +
                end
         | 
| 207 | 
            +
                # Update valid_data, missing_data, data_with_nils and gsl
         | 
| 208 | 
            +
                # at the end of an insertion.
         | 
| 209 | 
            +
                #
         | 
| 210 | 
            +
                # Use after Vector.add(v,false)
         | 
| 211 | 
            +
                # Usage:
         | 
| 212 | 
            +
                #   v=Statsample::Vector.new
         | 
| 213 | 
            +
                #   v.add(2,false)
         | 
| 214 | 
            +
                #   v.add(4,false)
         | 
| 215 | 
            +
                #   v.data
         | 
| 216 | 
            +
                #   => [2,3]
         | 
| 217 | 
            +
                #   v.valid_data
         | 
| 218 | 
            +
                #   => []
         | 
| 219 | 
            +
                #   v.set_valid_data
         | 
| 220 | 
            +
                #   v.valid_data
         | 
| 221 | 
            +
                #   => [2,3]
         | 
| 222 | 
            +
                def set_valid_data
         | 
| 223 | 
            +
                    @valid_data.clear
         | 
| 224 | 
            +
                    @missing_data.clear
         | 
| 225 | 
            +
                    @data_with_nils.clear
         | 
| 226 | 
            +
                    @gsl=nil
         | 
| 227 | 
            +
                    set_valid_data_intern
         | 
| 228 | 
            +
                    set_scale_data if(@type==:scale)
         | 
| 229 | 
            +
                end
         | 
| 230 | 
            +
             | 
| 231 | 
            +
                if Statsample::STATSAMPLE__.respond_to?(:set_valid_data_intern)
         | 
| 232 | 
            +
                    def set_valid_data_intern #:nodoc:
         | 
| 233 | 
            +
                        Statsample::STATSAMPLE__.set_valid_data_intern(self)
         | 
| 234 | 
            +
                    end
         | 
| 235 | 
            +
                else
         | 
| 236 | 
            +
                    def set_valid_data_intern #:nodoc:
         | 
| 237 | 
            +
                        _set_valid_data_intern                  
         | 
| 238 | 
            +
                    end
         | 
| 239 | 
            +
                end
         | 
| 240 | 
            +
                def _set_valid_data_intern #:nodoc:
         | 
| 241 | 
            +
                    @data.each do |n|
         | 
| 242 | 
            +
                        if is_valid? n
         | 
| 243 | 
            +
                            @valid_data.push(n)
         | 
| 244 | 
            +
                            @data_with_nils.push(n)
         | 
| 245 | 
            +
                        else
         | 
| 246 | 
            +
                            @data_with_nils.push(nil)
         | 
| 247 | 
            +
                            @missing_data.push(n)
         | 
| 248 | 
            +
                        end
         | 
| 146 249 | 
             
                    end
         | 
| 147 | 
            -
                    
         | 
| 148 | 
            -
             | 
| 149 | 
            -
             | 
| 250 | 
            +
                    @has_missing_data=@missing_data.size>0
         | 
| 251 | 
            +
                end
         | 
| 252 | 
            +
             | 
| 253 | 
            +
                # Retrieves true if data has one o more missing values
         | 
| 254 | 
            +
                def has_missing_data?
         | 
| 255 | 
            +
                    @has_missing_data
         | 
| 256 | 
            +
                end
         | 
| 257 | 
            +
                # Retrieves label for value x. Retrieves x if
         | 
| 258 | 
            +
                # no label defined.
         | 
| 259 | 
            +
                def labeling(x)
         | 
| 260 | 
            +
                    @labels.has_key?(x) ? @labels[x].to_s : x.to_s
         | 
| 261 | 
            +
                end
         | 
| 262 | 
            +
                # Returns a Vector with data with labels replaced by the label.
         | 
| 263 | 
            +
                def vector_labeled
         | 
| 264 | 
            +
                    d=@data.collect{|x|
         | 
| 265 | 
            +
                        if @labels.has_key? x
         | 
| 266 | 
            +
                            @labels[x]
         | 
| 267 | 
            +
                        else
         | 
| 268 | 
            +
                            x
         | 
| 269 | 
            +
                        end
         | 
| 270 | 
            +
                    }
         | 
| 271 | 
            +
                    Vector.new(d,@type)
         | 
| 272 | 
            +
                end
         | 
| 273 | 
            +
                # Size of total data
         | 
| 274 | 
            +
                def size
         | 
| 275 | 
            +
                    @data.size
         | 
| 276 | 
            +
                end
         | 
| 277 | 
            +
                alias_method :n, :size
         | 
| 278 | 
            +
             | 
| 279 | 
            +
                # Retrieves i element of data
         | 
| 280 | 
            +
                def [](i)
         | 
| 281 | 
            +
                    @data[i]
         | 
| 282 | 
            +
                end
         | 
| 283 | 
            +
                # Set i element of data. 
         | 
| 284 | 
            +
                # Note: Use set_valid_data if you include missing values
         | 
| 285 | 
            +
                def []=(i,v)
         | 
| 286 | 
            +
                    @data[i]=v
         | 
| 287 | 
            +
                end
         | 
| 288 | 
            +
                # Return true if a value is valid (not nil and not included on missing values)
         | 
| 289 | 
            +
                def is_valid?(x)
         | 
| 290 | 
            +
                    !(x.nil? or @missing_values.include? x)
         | 
| 291 | 
            +
                end
         | 
| 292 | 
            +
                # Set missing_values.
         | 
| 293 | 
            +
                # if update_valid = false, you should use
         | 
| 294 | 
            +
                # set_valid_data after all changes
         | 
| 295 | 
            +
                def missing_values=(vals)
         | 
| 296 | 
            +
                    @missing_values = vals
         | 
| 297 | 
            +
                    set_valid_data
         | 
| 298 | 
            +
                end
         | 
| 299 | 
            +
                # Set level of measurement. 
         | 
| 300 | 
            +
                def type=(t)
         | 
| 301 | 
            +
                    @type=t	
         | 
| 302 | 
            +
                    set_scale_data if(t==:scale)
         | 
| 303 | 
            +
                end
         | 
| 304 | 
            +
                def to_a
         | 
| 305 | 
            +
                    @data.dup
         | 
| 306 | 
            +
                end
         | 
| 307 | 
            +
                alias_method :to_ary, :to_a 
         | 
| 308 | 
            +
                
         | 
| 309 | 
            +
                # Vector sum. 
         | 
| 310 | 
            +
                # - If v is a scalar, add this value to all elements
         | 
| 311 | 
            +
                # - If v is a Array or a Vector, should be of the same size of this vector
         | 
| 312 | 
            +
                #   every item of this vector will be added to the value of the
         | 
| 313 | 
            +
                #   item at the same position on the other vector
         | 
| 314 | 
            +
                def +(v)
         | 
| 315 | 
            +
                    _vector_ari("+",v)
         | 
| 316 | 
            +
                end
         | 
| 317 | 
            +
                # Vector rest. 
         | 
| 318 | 
            +
                # - If v is a scalar, rest this value to all elements
         | 
| 319 | 
            +
                # - If v is a Array or a Vector, should be of the same 
         | 
| 320 | 
            +
                #   size of this vector
         | 
| 321 | 
            +
                #   every item of this vector will be rested to the value of the
         | 
| 322 | 
            +
                #   item at the same position on the other vector
         | 
| 323 | 
            +
                
         | 
| 324 | 
            +
                def -(v)
         | 
| 325 | 
            +
                    _vector_ari("-",v)
         | 
| 326 | 
            +
                end
         | 
| 327 | 
            +
                # Reports all values that doesn't comply with a condition.
         | 
| 328 | 
            +
                # Returns a hash with the index of data and the invalid data.
         | 
| 329 | 
            +
                def verify
         | 
| 330 | 
            +
                    h={}
         | 
| 331 | 
            +
                    (0...@data.size).to_a.each{|i|
         | 
| 332 | 
            +
                        if !(yield @data[i])
         | 
| 333 | 
            +
                            h[i]=@data[i]
         | 
| 334 | 
            +
                        end
         | 
| 335 | 
            +
                    }
         | 
| 336 | 
            +
                    h
         | 
| 337 | 
            +
                end
         | 
| 338 | 
            +
                def _vector_ari(method,v) # :nodoc:
         | 
| 339 | 
            +
                    if(v.is_a? Vector or v.is_a? Array)
         | 
| 340 | 
            +
                        if v.size==@data.size
         | 
| 341 | 
            +
            #                    i=0
         | 
| 342 | 
            +
                            sum=[]
         | 
| 343 | 
            +
                            0.upto(v.size-1) {|i|
         | 
| 344 | 
            +
                                if((v.is_a? Vector and v.is_valid?(v[i]) and is_valid?(@data[i])) or (v.is_a? Array and !v[i].nil? and !data[i].nil?))
         | 
| 345 | 
            +
                                    sum.push(@data[i].send(method,v[i]))
         | 
| 346 | 
            +
                                else
         | 
| 347 | 
            +
                                    sum.push(nil)
         | 
| 348 | 
            +
                                end
         | 
| 349 | 
            +
                            }
         | 
| 350 | 
            +
                            Statsample::Vector.new(sum)
         | 
| 351 | 
            +
                        else
         | 
| 352 | 
            +
                            raise ArgumentError, "The array/vector parameter should be of the same size of the original vector"
         | 
| 353 | 
            +
                        end
         | 
| 354 | 
            +
                    elsif(v.respond_to? method )
         | 
| 355 | 
            +
                        Statsample::Vector.new(
         | 
| 356 | 
            +
                            @data.collect  {|x|
         | 
| 357 | 
            +
                                if(!x.nil?)
         | 
| 358 | 
            +
                                x.send(method,v)
         | 
| 359 | 
            +
                                else
         | 
| 360 | 
            +
                                    nil
         | 
| 361 | 
            +
                                end
         | 
| 362 | 
            +
                            }
         | 
| 363 | 
            +
                        )
         | 
| 364 | 
            +
                    else
         | 
| 365 | 
            +
                        raise TypeError,"You should pass a scalar or a array/vector"
         | 
| 150 366 | 
             
                    end
         | 
| 151 367 |  | 
| 152 | 
            -
             | 
| 153 | 
            -
             | 
| 154 | 
            -
             | 
| 155 | 
            -
             | 
| 156 | 
            -
             | 
| 157 | 
            -
             | 
| 158 | 
            -
             | 
| 159 | 
            -
             | 
| 160 | 
            -
             | 
| 161 | 
            -
             | 
| 162 | 
            -
             | 
| 163 | 
            -
             | 
| 164 | 
            -
             | 
| 165 | 
            -
             | 
| 166 | 
            -
                         | 
| 167 | 
            -
             | 
| 368 | 
            +
                end
         | 
| 369 | 
            +
                # Return an array with the data splitted by a separator.
         | 
| 370 | 
            +
                #   a=Vector.new(["a,b","c,d","a,b","d"])
         | 
| 371 | 
            +
                #   a.splitted
         | 
| 372 | 
            +
                #     =>
         | 
| 373 | 
            +
                #   [["a","b"],["c","d"],["a","b"],["d"]]
         | 
| 374 | 
            +
                def splitted(sep=Statsample::SPLIT_TOKEN)
         | 
| 375 | 
            +
                    @data.collect{|x|
         | 
| 376 | 
            +
                        if x.nil?
         | 
| 377 | 
            +
                            nil
         | 
| 378 | 
            +
                        elsif (x.respond_to? :split)
         | 
| 379 | 
            +
                            x.split(sep)
         | 
| 380 | 
            +
                        else
         | 
| 381 | 
            +
                            [x]
         | 
| 382 | 
            +
                        end
         | 
| 383 | 
            +
                    }
         | 
| 384 | 
            +
                end
         | 
| 385 | 
            +
                # Returns a hash of Vectors, defined by the different values
         | 
| 386 | 
            +
                # defined on the fields
         | 
| 387 | 
            +
                # Example:
         | 
| 388 | 
            +
                #
         | 
| 389 | 
            +
                #  a=Vector.new(["a,b","c,d","a,b"])
         | 
| 390 | 
            +
                #  a.split_by_separator
         | 
| 391 | 
            +
                #  =>  {"a"=>#<Statsample::Type::Nominal:0x7f2dbcc09d88 
         | 
| 392 | 
            +
                #        @data=[1, 0, 1]>, 
         | 
| 393 | 
            +
                #       "b"=>#<Statsample::Type::Nominal:0x7f2dbcc09c48 
         | 
| 394 | 
            +
                #        @data=[1, 1, 0]>, 
         | 
| 395 | 
            +
                #      "c"=>#<Statsample::Type::Nominal:0x7f2dbcc09b08 
         | 
| 396 | 
            +
                #        @data=[0, 1, 1]>}
         | 
| 397 | 
            +
                #
         | 
| 398 | 
            +
                def split_by_separator(sep=Statsample::SPLIT_TOKEN)
         | 
| 399 | 
            +
                    split_data=splitted(sep)
         | 
| 400 | 
            +
                    factors=split_data.flatten.uniq.compact
         | 
| 401 | 
            +
                    out=factors.inject({}) {|a,x|
         | 
| 402 | 
            +
                        a[x]=[]
         | 
| 403 | 
            +
                        a
         | 
| 404 | 
            +
                    }
         | 
| 405 | 
            +
                    split_data.each{|r|
         | 
| 406 | 
            +
                        if r.nil?
         | 
| 407 | 
            +
                            factors.each{|f|
         | 
| 408 | 
            +
                                out[f].push(nil)
         | 
| 409 | 
            +
                            }
         | 
| 410 | 
            +
                        else
         | 
| 411 | 
            +
                        factors.each{|f|
         | 
| 412 | 
            +
                            out[f].push(r.include?(f) ? 1:0) 
         | 
| 168 413 | 
             
                        }
         | 
| 169 | 
            -
                         | 
| 170 | 
            -
                     | 
| 171 | 
            -
                     | 
| 172 | 
            -
             | 
| 173 | 
            -
             | 
| 174 | 
            -
                     | 
| 175 | 
            -
             | 
| 414 | 
            +
                        end
         | 
| 415 | 
            +
                    }
         | 
| 416 | 
            +
                    out.inject({}){|s,v|
         | 
| 417 | 
            +
                        s[v[0]]=Vector.new(v[1],:nominal)
         | 
| 418 | 
            +
                        s
         | 
| 419 | 
            +
                    }
         | 
| 420 | 
            +
                end
         | 
| 421 | 
            +
                def split_by_separator_freq(sep=Statsample::SPLIT_TOKEN)
         | 
| 422 | 
            +
                    split_by_separator(sep).inject({}) {|a,v|
         | 
| 423 | 
            +
                        a[v[0]]=v[1].inject {|s,x| s+x.to_i}
         | 
| 424 | 
            +
                        a
         | 
| 425 | 
            +
                    }
         | 
| 426 | 
            +
                end
         | 
| 427 | 
            +
                
         | 
| 428 | 
            +
                # Returns an random sample of size n, with replacement,
         | 
| 429 | 
            +
                # only with valid data.
         | 
| 430 | 
            +
                #
         | 
| 431 | 
            +
                # In all the trails, every item have the same probability
         | 
| 432 | 
            +
                # of been selected.
         | 
| 433 | 
            +
                def sample_with_replacement(sample=1)
         | 
| 434 | 
            +
                    if(@type!=:scale or !HAS_GSL)
         | 
| 435 | 
            +
                        vds=@valid_data.size
         | 
| 436 | 
            +
                        (0...sample).collect{ @valid_data[rand(vds)] }
         | 
| 437 | 
            +
                    else
         | 
| 438 | 
            +
                        r = GSL::Rng.alloc(GSL::Rng::MT19937,rand(10000))
         | 
| 439 | 
            +
                        r.sample(@gsl, sample).to_a
         | 
| 176 440 | 
             
                    end
         | 
| 441 | 
            +
                end
         | 
| 442 | 
            +
                # Returns an random sample of size n, without replacement,
         | 
| 443 | 
            +
                # only with valid data.
         | 
| 444 | 
            +
                #
         | 
| 445 | 
            +
                # Every element could only be selected once.
         | 
| 446 | 
            +
                # 
         | 
| 447 | 
            +
                # A sample of the same size of the vector is the vector itself.
         | 
| 177 448 |  | 
| 178 | 
            -
             | 
| 179 | 
            -
                    
         | 
| 180 | 
            -
             | 
| 181 | 
            -
                         | 
| 182 | 
            -
             | 
| 449 | 
            +
                def sample_without_replacement(sample=1)
         | 
| 450 | 
            +
                    if(@type!=:scale or !HAS_GSL)
         | 
| 451 | 
            +
                        raise ArgumentError, "Sample size couldn't be greater than n" if sample>@valid_data.size
         | 
| 452 | 
            +
                        out=[]
         | 
| 453 | 
            +
                        size=@valid_data.size
         | 
| 454 | 
            +
                        while out.size<sample
         | 
| 455 | 
            +
                        value=rand(size)
         | 
| 456 | 
            +
                        out.push(value) if !out.include?value
         | 
| 457 | 
            +
                        end
         | 
| 458 | 
            +
                        out.collect{|i|@data[i]}
         | 
| 459 | 
            +
                    else
         | 
| 460 | 
            +
                        r = GSL::Rng.alloc(GSL::Rng::MT19937,rand(10000))
         | 
| 461 | 
            +
                        r.choose(@gsl, sample).to_a
         | 
| 462 | 
            +
                    end
         | 
| 463 | 
            +
                end
         | 
| 464 | 
            +
                 # Retrieves number of cases which comply condition.
         | 
| 465 | 
            +
                 # If block given, retrieves number of instances where
         | 
| 466 | 
            +
                 # block returns true.
         | 
| 467 | 
            +
                 # If other values given, retrieves the frequency for
         | 
| 468 | 
            +
                 # this value.
         | 
| 469 | 
            +
                def count(x=false)
         | 
| 470 | 
            +
                    if block_given?
         | 
| 471 | 
            +
                        r=@data.inject(0) {|s, i|
         | 
| 472 | 
            +
                            r=yield i
         | 
| 473 | 
            +
                            s+(r ? 1 : 0)
         | 
| 183 474 | 
             
                        }
         | 
| 475 | 
            +
                        r.nil? ? 0 : r
         | 
| 476 | 
            +
                    else
         | 
| 477 | 
            +
                        frequencies[x].nil? ? 0 : frequencies[x]
         | 
| 184 478 | 
             
                    end
         | 
| 185 | 
            -
             | 
| 186 | 
            -
             | 
| 187 | 
            -
             | 
| 188 | 
            -
             | 
| 189 | 
            -
             | 
| 190 | 
            -
             | 
| 191 | 
            -
             | 
| 479 | 
            +
                end
         | 
| 480 | 
            +
                
         | 
| 481 | 
            +
                # Returns the database type for the vector, according to its content
         | 
| 482 | 
            +
                
         | 
| 483 | 
            +
                def db_type(dbs='mysql')
         | 
| 484 | 
            +
                    # first, detect any character not number
         | 
| 485 | 
            +
                    if @data.find {|v|  v.to_s=~/\d{2,2}-\d{2,2}-\d{4,4}/} or @data.find {|v|  v.to_s=~/\d{4,4}-\d{2,2}-\d{2,2}/}
         | 
| 486 | 
            +
                        return "DATE"
         | 
| 487 | 
            +
                    elsif @data.find {|v|  v.to_s=~/[^0-9e.-]/ }
         | 
| 488 | 
            +
                        return "VARCHAR (255)"
         | 
| 489 | 
            +
                    elsif @data.find {|v| v.to_s=~/\./}
         | 
| 490 | 
            +
                        return "DOUBLE"
         | 
| 491 | 
            +
                    else
         | 
| 492 | 
            +
                        return "INTEGER"
         | 
| 192 493 | 
             
                    end
         | 
| 193 | 
            -
             | 
| 194 | 
            -
             | 
| 195 | 
            -
             | 
| 196 | 
            -
                     | 
| 197 | 
            -
             | 
| 198 | 
            -
                    #   v=Statsample::Vector.new
         | 
| 199 | 
            -
                    #   v.add(2,false)
         | 
| 200 | 
            -
                    #   v.add(4,false)
         | 
| 201 | 
            -
                    #   v.data
         | 
| 202 | 
            -
                    #   => [2,3]
         | 
| 203 | 
            -
                    #   v.valid_data
         | 
| 204 | 
            -
                    #   => []
         | 
| 205 | 
            -
                    #   v.set_valid_data
         | 
| 206 | 
            -
                    #   v.valid_data
         | 
| 207 | 
            -
                    #   => [2,3]
         | 
| 208 | 
            -
                    def set_valid_data
         | 
| 209 | 
            -
            			@valid_data.clear
         | 
| 210 | 
            -
            			@missing_data.clear
         | 
| 211 | 
            -
                        @data_with_nils.clear
         | 
| 212 | 
            -
                        @gsl=nil
         | 
| 213 | 
            -
                        set_valid_data_intern
         | 
| 214 | 
            -
                        set_scale_data if(@type==:scale)
         | 
| 215 | 
            -
            		end
         | 
| 216 | 
            -
             | 
| 217 | 
            -
                    if Statsample::STATSAMPLE__.respond_to?(:set_valid_data_intern)
         | 
| 218 | 
            -
                        def set_valid_data_intern #:nodoc:
         | 
| 219 | 
            -
                            Statsample::STATSAMPLE__.set_valid_data_intern(self)
         | 
| 220 | 
            -
                        end
         | 
| 494 | 
            +
                end
         | 
| 495 | 
            +
                # Return true if all data is Numeric or nil
         | 
| 496 | 
            +
                def can_be_scale?
         | 
| 497 | 
            +
                    if @data.find {|v| !v.nil? and !v.is_a? Numeric}
         | 
| 498 | 
            +
                        false
         | 
| 221 499 | 
             
                    else
         | 
| 222 | 
            -
                         | 
| 223 | 
            -
                            _set_valid_data_intern
         | 
| 224 | 
            -
                        end
         | 
| 500 | 
            +
                        true
         | 
| 225 501 | 
             
                    end
         | 
| 226 | 
            -
             | 
| 227 | 
            -
             | 
| 228 | 
            -
             | 
| 229 | 
            -
             | 
| 230 | 
            -
             | 
| 231 | 
            -
             | 
| 232 | 
            -
             | 
| 233 | 
            -
             | 
| 502 | 
            +
                end
         | 
| 503 | 
            +
                
         | 
| 504 | 
            +
                def to_s
         | 
| 505 | 
            +
                    sprintf("Vector(type:%s, n:%d)[%s]",@type.to_s,@data.size, @data.collect{|d| d.nil? ? "nil":d}.join(","))
         | 
| 506 | 
            +
                end
         | 
| 507 | 
            +
                # Ugly name. Really, create a Vector for standard 'matrix' package.
         | 
| 508 | 
            +
                # <tt>dir</tt> could be :horizontal or :vertical
         | 
| 509 | 
            +
                def to_matrix(dir=:horizontal)
         | 
| 510 | 
            +
                    case dir
         | 
| 511 | 
            +
                    when :horizontal
         | 
| 512 | 
            +
                        Matrix[@data]
         | 
| 513 | 
            +
                    when :vertical
         | 
| 514 | 
            +
                        Matrix.columns([@data])
         | 
| 515 | 
            +
                    end
         | 
| 516 | 
            +
                end
         | 
| 517 | 
            +
                def inspect
         | 
| 518 | 
            +
                    self.to_s
         | 
| 519 | 
            +
                end
         | 
| 520 | 
            +
                # Retrieves uniques values for data.
         | 
| 521 | 
            +
                def factors
         | 
| 522 | 
            +
                    if @type==:scale
         | 
| 523 | 
            +
                        
         | 
| 524 | 
            +
                        @scale_data.uniq.sort
         | 
| 525 | 
            +
                    else
         | 
| 526 | 
            +
                        @valid_data.uniq.sort
         | 
| 527 | 
            +
                    end
         | 
| 528 | 
            +
                end
         | 
| 529 | 
            +
                if Statsample::STATSAMPLE__.respond_to?(:frequencies)
         | 
| 530 | 
            +
                    # Returns a hash with the distribution of frecuencies for
         | 
| 531 | 
            +
                    # the sample                
         | 
| 532 | 
            +
                    def frequencies
         | 
| 533 | 
            +
                        Statsample::STATSAMPLE__.frequencies(@valid_data)
         | 
| 534 | 
            +
                    end
         | 
| 535 | 
            +
                else
         | 
| 536 | 
            +
                    def frequencies #:nodoc:
         | 
| 537 | 
            +
                        _frequencies
         | 
| 538 | 
            +
                    end
         | 
| 539 | 
            +
                end
         | 
| 540 | 
            +
                def _frequencies #:nodoc:
         | 
| 541 | 
            +
                    @valid_data.inject(Hash.new) {|a,x|
         | 
| 542 | 
            +
                        a[x]||=0
         | 
| 543 | 
            +
                        a[x]=a[x]+1
         | 
| 544 | 
            +
                        a
         | 
| 545 | 
            +
                    }
         | 
| 546 | 
            +
                end
         | 
| 547 | 
            +
                # Plot frequencies on a chart, using gnuplot
         | 
| 548 | 
            +
                    def plot_frequencies
         | 
| 549 | 
            +
                    require 'gnuplot'
         | 
| 550 | 
            +
                    x=[]
         | 
| 551 | 
            +
                    y=[]
         | 
| 552 | 
            +
                    self.frequencies.sort.each{|k,v|
         | 
| 553 | 
            +
                        x.push(k)
         | 
| 554 | 
            +
                        y.push(v) 
         | 
| 555 | 
            +
                    }
         | 
| 556 | 
            +
                    Gnuplot.open do |gp|
         | 
| 557 | 
            +
                        Gnuplot::Plot.new( gp ) do |plot|
         | 
| 558 | 
            +
                            plot.boxwidth("0.9 absolute")
         | 
| 559 | 
            +
                            plot.yrange("[0:#{y.max}]")
         | 
| 560 | 
            +
                            plot.style("fill  solid 1.00 border -1")
         | 
| 561 | 
            +
                            plot.set("xtics border in scale 1,0.5 nomirror rotate by -45  offset character 0, 0, 0")
         | 
| 562 | 
            +
                            plot.style("histogram")
         | 
| 563 | 
            +
                            plot.style("data histogram")
         | 
| 564 | 
            +
                            i=-1
         | 
| 565 | 
            +
                            plot.set("xtics","("+x.collect{|v| i+=1; sprintf("\"%s\" %d",v,i)}.join(",")+")")
         | 
| 566 | 
            +
                            plot.data << Gnuplot::DataSet.new( [y] ) do |ds|
         | 
| 567 | 
            +
                                end
         | 
| 234 568 | 
             
                            end
         | 
| 235 569 | 
             
                        end
         | 
| 236 | 
            -
                        @has_missing_data=@missing_data.size>0
         | 
| 237 | 
            -
                    end
         | 
| 238 570 |  | 
| 239 | 
            -
                    # Retrieves true if data has one o more missing values
         | 
| 240 | 
            -
                    def has_missing_data?
         | 
| 241 | 
            -
                        @has_missing_data
         | 
| 242 | 
            -
                    end
         | 
| 243 | 
            -
                    # Retrieves label for value x. Retrieves x if
         | 
| 244 | 
            -
                    # no label defined.
         | 
| 245 | 
            -
                    def labeling(x)
         | 
| 246 | 
            -
                        @labels.has_key?(x) ? @labels[x].to_s : x.to_s
         | 
| 247 | 
            -
                    end
         | 
| 248 | 
            -
                    # Returns a Vector with data with labels replaced by the label.
         | 
| 249 | 
            -
                    def vector_labeled
         | 
| 250 | 
            -
                        d=@data.collect{|x|
         | 
| 251 | 
            -
                            if @labels.has_key? x
         | 
| 252 | 
            -
                                @labels[x]
         | 
| 253 | 
            -
                            else
         | 
| 254 | 
            -
                                x
         | 
| 255 | 
            -
                            end
         | 
| 256 | 
            -
                        }
         | 
| 257 | 
            -
                        Vector.new(d,@type)
         | 
| 258 571 | 
             
                    end
         | 
| 259 | 
            -
                    # Size of total data
         | 
| 260 | 
            -
                    def size
         | 
| 261 | 
            -
                        @data.size
         | 
| 262 | 
            -
                    end
         | 
| 263 | 
            -
                    alias_method :n, :size
         | 
| 264 572 |  | 
| 265 | 
            -
             | 
| 266 | 
            -
                     | 
| 267 | 
            -
             | 
| 268 | 
            -
             | 
| 269 | 
            -
                     | 
| 270 | 
            -
                    #  | 
| 271 | 
            -
                    def  | 
| 272 | 
            -
                        @ | 
| 273 | 
            -
                    end
         | 
| 274 | 
            -
                    #  | 
| 275 | 
            -
                     | 
| 276 | 
            -
             | 
| 277 | 
            -
             | 
| 278 | 
            -
             | 
| 279 | 
            -
            		def missing_values=(vals)
         | 
| 280 | 
            -
            			@missing_values = vals
         | 
| 281 | 
            -
            			set_valid_data
         | 
| 282 | 
            -
            		end
         | 
| 283 | 
            -
                    # Set level of measurement. 
         | 
| 284 | 
            -
            		def type=(t)
         | 
| 285 | 
            -
            			@type=t	
         | 
| 286 | 
            -
                        set_scale_data if(t==:scale)
         | 
| 287 | 
            -
            		end
         | 
| 288 | 
            -
                    def to_a
         | 
| 289 | 
            -
                        @data.dup
         | 
| 290 | 
            -
                    end
         | 
| 291 | 
            -
                    alias_method :to_ary, :to_a 
         | 
| 292 | 
            -
                    
         | 
| 293 | 
            -
                    # Vector sum. 
         | 
| 294 | 
            -
                    # - If v is a scalar, add this value to all elements
         | 
| 295 | 
            -
                    # - If v is a Array or a Vector, should be of the same size of this vector
         | 
| 296 | 
            -
                    #   every item of this vector will be added to the value of the
         | 
| 297 | 
            -
                    #   item at the same position on the other vector
         | 
| 298 | 
            -
                    def +(v)
         | 
| 299 | 
            -
                        _vector_ari("+",v)
         | 
| 300 | 
            -
                    end
         | 
| 301 | 
            -
                    # Vector rest. 
         | 
| 302 | 
            -
                    # - If v is a scalar, rest this value to all elements
         | 
| 303 | 
            -
                    # - If v is a Array or a Vector, should be of the same 
         | 
| 304 | 
            -
                    #   size of this vector
         | 
| 305 | 
            -
                    #   every item of this vector will be rested to the value of the
         | 
| 306 | 
            -
                    #   item at the same position on the other vector
         | 
| 307 | 
            -
                    
         | 
| 308 | 
            -
                    def -(v)
         | 
| 309 | 
            -
                        _vector_ari("-",v)
         | 
| 310 | 
            -
                    end
         | 
| 311 | 
            -
                    # Reports all values that doesn't comply with a condition.
         | 
| 312 | 
            -
                    # Returns a hash with the index of data and the invalid data.
         | 
| 313 | 
            -
                    def verify
         | 
| 314 | 
            -
                        h={}
         | 
| 315 | 
            -
                        (0...@data.size).to_a.each{|i|
         | 
| 316 | 
            -
                            if !(yield @data[i])
         | 
| 317 | 
            -
                                h[i]=@data[i]
         | 
| 318 | 
            -
                            end
         | 
| 319 | 
            -
                        }
         | 
| 320 | 
            -
                        h
         | 
| 321 | 
            -
                    end
         | 
| 322 | 
            -
                    def _vector_ari(method,v) # :nodoc:
         | 
| 323 | 
            -
                        if(v.is_a? Vector or v.is_a? Array)
         | 
| 324 | 
            -
                            if v.size==@data.size
         | 
| 325 | 
            -
                                i=0
         | 
| 326 | 
            -
                                sum=[]
         | 
| 327 | 
            -
                                0.upto(v.size-1) {|i|
         | 
| 328 | 
            -
                                    if((v.is_a? Vector and v.is_valid?(v[i]) and is_valid?(@data[i])) or (v.is_a? Array and !v[i].nil? and !data[i].nil?))
         | 
| 329 | 
            -
                                        sum.push(@data[i].send(method,v[i]))
         | 
| 330 | 
            -
                                    else
         | 
| 331 | 
            -
                                        sum.push(nil)
         | 
| 332 | 
            -
                                    end
         | 
| 333 | 
            -
                                }
         | 
| 334 | 
            -
                                Statsample::Vector.new(sum)
         | 
| 335 | 
            -
                            else
         | 
| 336 | 
            -
                                raise ArgumentError, "The array/vector parameter should be of the same size of the original vector"
         | 
| 337 | 
            -
                            end
         | 
| 338 | 
            -
                        elsif(v.respond_to? method )
         | 
| 339 | 
            -
                            Statsample::Vector.new(
         | 
| 340 | 
            -
                                @data.collect  {|x|
         | 
| 341 | 
            -
                                    if(!x.nil?)
         | 
| 342 | 
            -
                                    x.send(method,v)
         | 
| 343 | 
            -
                                    else
         | 
| 344 | 
            -
                                        nil
         | 
| 345 | 
            -
                                    end
         | 
| 346 | 
            -
                                }
         | 
| 347 | 
            -
                            )
         | 
| 348 | 
            -
                        else
         | 
| 349 | 
            -
                            raise TypeError,"You should pass a scalar or a array/vector"
         | 
| 350 | 
            -
                        end
         | 
| 351 | 
            -
                        
         | 
| 352 | 
            -
                    end
         | 
| 353 | 
            -
                    # Return an array with the data splitted by a separator.
         | 
| 354 | 
            -
                    #   a=Vector.new(["a,b","c,d","a,b","d"])
         | 
| 355 | 
            -
                    #   a.splitted
         | 
| 356 | 
            -
                    #     =>
         | 
| 357 | 
            -
                    #   [["a","b"],["c","d"],["a","b"],["d"]]
         | 
| 358 | 
            -
                    def splitted(sep=Statsample::SPLIT_TOKEN)
         | 
| 359 | 
            -
                        @data.collect{|x|
         | 
| 360 | 
            -
                            if x.nil?
         | 
| 361 | 
            -
                                nil
         | 
| 362 | 
            -
                            elsif (x.respond_to? :split)
         | 
| 363 | 
            -
                                x.split(sep)
         | 
| 364 | 
            -
                            else
         | 
| 365 | 
            -
                                [x]
         | 
| 366 | 
            -
                            end
         | 
| 367 | 
            -
                        }
         | 
| 368 | 
            -
                    end
         | 
| 369 | 
            -
                    # Returns a hash of Vectors, defined by the different values
         | 
| 370 | 
            -
                    # defined on the fields
         | 
| 371 | 
            -
                    # Example:
         | 
| 372 | 
            -
                    #
         | 
| 373 | 
            -
                    #  a=Vector.new(["a,b","c,d","a,b"])
         | 
| 374 | 
            -
                    #  a.split_by_separator
         | 
| 375 | 
            -
                    #  =>  {"a"=>#<Statsample::Type::Nominal:0x7f2dbcc09d88 
         | 
| 376 | 
            -
                    #        @data=[1, 0, 1]>, 
         | 
| 377 | 
            -
                    #       "b"=>#<Statsample::Type::Nominal:0x7f2dbcc09c48 
         | 
| 378 | 
            -
                    #        @data=[1, 1, 0]>, 
         | 
| 379 | 
            -
                    #      "c"=>#<Statsample::Type::Nominal:0x7f2dbcc09b08 
         | 
| 380 | 
            -
                    #        @data=[0, 1, 1]>}
         | 
| 381 | 
            -
                    #
         | 
| 382 | 
            -
                    def split_by_separator(sep=Statsample::SPLIT_TOKEN)
         | 
| 383 | 
            -
                        split_data=splitted(sep)
         | 
| 384 | 
            -
                        factors=split_data.flatten.uniq.compact
         | 
| 385 | 
            -
                        out=factors.inject({}) {|a,x|
         | 
| 386 | 
            -
                            a[x]=[]
         | 
| 573 | 
            +
             | 
| 574 | 
            +
                    # Returns the most frequent item.
         | 
| 575 | 
            +
                    def mode
         | 
| 576 | 
            +
                        frequencies.max{|a,b| a[1]<=>b[1]}[0]
         | 
| 577 | 
            +
                    end
         | 
| 578 | 
            +
                    # The numbers of item with valid data.
         | 
| 579 | 
            +
                    def n_valid
         | 
| 580 | 
            +
                        @valid_data.size
         | 
| 581 | 
            +
                    end
         | 
| 582 | 
            +
                    # Returns a hash with the distribution of proportions of
         | 
| 583 | 
            +
                    # the sample.
         | 
| 584 | 
            +
                    def proportions
         | 
| 585 | 
            +
                        frequencies.inject({}){|a,v|
         | 
| 586 | 
            +
                            a[v[0]] = v[1].quo(n_valid)
         | 
| 387 587 | 
             
                            a
         | 
| 388 588 | 
             
                        }
         | 
| 389 | 
            -
                        split_data.each{|r|
         | 
| 390 | 
            -
                            if r.nil?
         | 
| 391 | 
            -
                                factors.each{|f|
         | 
| 392 | 
            -
                                    out[f].push(nil)
         | 
| 393 | 
            -
                                }
         | 
| 394 | 
            -
                            else
         | 
| 395 | 
            -
                            factors.each{|f|
         | 
| 396 | 
            -
                                out[f].push(r.include?(f) ? 1:0) 
         | 
| 397 | 
            -
                            }
         | 
| 398 | 
            -
                            end
         | 
| 399 | 
            -
                        }
         | 
| 400 | 
            -
                        out.inject({}){|s,v|
         | 
| 401 | 
            -
                            s[v[0]]=Vector.new(v[1],:nominal)
         | 
| 402 | 
            -
                            s
         | 
| 403 | 
            -
                        }
         | 
| 404 589 | 
             
                    end
         | 
| 405 | 
            -
                     | 
| 406 | 
            -
             | 
| 407 | 
            -
             | 
| 408 | 
            -
             | 
| 590 | 
            +
                    # Proportion of a given value.
         | 
| 591 | 
            +
                    def proportion(v=1)
         | 
| 592 | 
            +
                        frequencies[v].quo(@valid_data.size)
         | 
| 593 | 
            +
                    end
         | 
| 594 | 
            +
                    def summary(out="")
         | 
| 595 | 
            +
                        out << sprintf("n valid:%d\n",n_valid)
         | 
| 596 | 
            +
                        out <<  sprintf("factors:%s\n",factors.join(","))
         | 
| 597 | 
            +
                        out <<  "mode:"+mode.to_s+"\n"
         | 
| 598 | 
            +
                        out <<  "Distribution:\n"
         | 
| 599 | 
            +
                        frequencies.sort.each{|k,v|
         | 
| 600 | 
            +
                            key=labels.has_key?(k) ? labels[k]:k
         | 
| 601 | 
            +
                            out <<  sprintf("%s : %s (%0.2f%%)\n",key,v, (v.quo(n_valid))*100)
         | 
| 409 602 | 
             
                        }
         | 
| 410 | 
            -
             | 
| 411 | 
            -
             | 
| 412 | 
            -
                    # Returns an random sample of size n, with replacement,
         | 
| 413 | 
            -
                    # only with valid data.
         | 
| 414 | 
            -
                    #
         | 
| 415 | 
            -
                    # In all the trails, every item have the same probability
         | 
| 416 | 
            -
                    # of been selected.
         | 
| 417 | 
            -
            		def sample_with_replacement(sample=1)
         | 
| 418 | 
            -
                        if(@type!=:scale or !HAS_GSL)
         | 
| 419 | 
            -
                            vds=@valid_data.size
         | 
| 420 | 
            -
                            (0...sample).collect{ @valid_data[rand(vds)] }
         | 
| 421 | 
            -
                        else
         | 
| 422 | 
            -
                            r = GSL::Rng.alloc(GSL::Rng::MT19937,rand(10000))
         | 
| 423 | 
            -
                            r.sample(@gsl, sample).to_a
         | 
| 424 | 
            -
                        end
         | 
| 425 | 
            -
                    end
         | 
| 426 | 
            -
                    # Returns an random sample of size n, without replacement,
         | 
| 427 | 
            -
                    # only with valid data.
         | 
| 428 | 
            -
                    #
         | 
| 429 | 
            -
                    # Every element could only be selected once.
         | 
| 430 | 
            -
                    # 
         | 
| 431 | 
            -
                    # A sample of the same size of the vector is the vector itself.
         | 
| 432 | 
            -
                        
         | 
| 433 | 
            -
                    def sample_without_replacement(sample=1)
         | 
| 434 | 
            -
                        if(@type!=:scale or !HAS_GSL)
         | 
| 435 | 
            -
                            raise ArgumentError, "Sample size couldn't be greater than n" if sample>@valid_data.size
         | 
| 436 | 
            -
                            out=[]
         | 
| 437 | 
            -
                            size=@valid_data.size
         | 
| 438 | 
            -
                            while out.size<sample
         | 
| 439 | 
            -
                            value=rand(size)
         | 
| 440 | 
            -
                            out.push(value) if !out.include?value
         | 
| 441 | 
            -
                            end
         | 
| 442 | 
            -
                            out.collect{|i|@data[i]}
         | 
| 443 | 
            -
                        else
         | 
| 444 | 
            -
                            r = GSL::Rng.alloc(GSL::Rng::MT19937,rand(10000))
         | 
| 445 | 
            -
                            r.choose(@gsl, sample).to_a
         | 
| 603 | 
            +
                        if(@type==:ordinal)
         | 
| 604 | 
            +
                            out << "median:"+median.to_s+"\n"
         | 
| 446 605 | 
             
                        end
         | 
| 447 | 
            -
             | 
| 448 | 
            -
             | 
| 449 | 
            -
             | 
| 450 | 
            -
             | 
| 451 | 
            -
                     # If other values given, retrieves the frequency for
         | 
| 452 | 
            -
                     # this value.
         | 
| 453 | 
            -
                    def count(x=false)
         | 
| 454 | 
            -
                        if block_given?
         | 
| 455 | 
            -
                            r=@data.inject(0) {|s, i|
         | 
| 456 | 
            -
                                r=yield i
         | 
| 457 | 
            -
                                s+(r ? 1 : 0)
         | 
| 458 | 
            -
                            }
         | 
| 459 | 
            -
                            r.nil? ? 0 : r
         | 
| 460 | 
            -
                        else
         | 
| 461 | 
            -
                            frequencies[x].nil? ? 0 : frequencies[x]
         | 
| 606 | 
            +
                        if(@type==:scale)
         | 
| 607 | 
            +
                            out << "mean:"+mean.to_s+"\n"
         | 
| 608 | 
            +
                            out << "sd:"+sd.to_s+"\n"
         | 
| 609 | 
            +
                            
         | 
| 462 610 | 
             
                        end
         | 
| 611 | 
            +
                        out
         | 
| 463 612 | 
             
                    end
         | 
| 464 613 |  | 
| 465 | 
            -
                    #  | 
| 466 | 
            -
                    
         | 
| 467 | 
            -
             | 
| 468 | 
            -
                        # first, detect any character not number
         | 
| 469 | 
            -
                        if @data.find {|v|  v.to_s=~/\d{2,2}-\d{2,2}-\d{4,4}/} or @data.find {|v|  v.to_s=~/\d{4,4}-\d{2,2}-\d{2,2}/}
         | 
| 470 | 
            -
                            return "DATE"
         | 
| 471 | 
            -
                        elsif @data.find {|v|  v.to_s=~/[^0-9e.-]/ }
         | 
| 472 | 
            -
                            return "VARCHAR (255)"
         | 
| 473 | 
            -
                        elsif @data.find {|v| v.to_s=~/\./}
         | 
| 474 | 
            -
                            return "DOUBLE"
         | 
| 475 | 
            -
                        else
         | 
| 476 | 
            -
                            return "INTEGER"
         | 
| 477 | 
            -
                        end
         | 
| 614 | 
            +
                    # Variance of p, according to poblation size
         | 
| 615 | 
            +
                    def variance_proportion(n_poblation, v=1)
         | 
| 616 | 
            +
                        Statsample::proportion_variance_sample(self.proportion(v), @valid_data.size, n_poblation)
         | 
| 478 617 | 
             
                    end
         | 
| 479 | 
            -
                    #  | 
| 480 | 
            -
                    def  | 
| 481 | 
            -
                         | 
| 482 | 
            -
             | 
| 483 | 
            -
             | 
| 484 | 
            -
             | 
| 485 | 
            -
             | 
| 618 | 
            +
                    # Variance of p, according to poblation size
         | 
| 619 | 
            +
                    def variance_total(n_poblation, v=1)
         | 
| 620 | 
            +
                        Statsample::total_variance_sample(self.proportion(v), @valid_data.size, n_poblation)
         | 
| 621 | 
            +
                    end
         | 
| 622 | 
            +
                    def proportion_confidence_interval_t(n_poblation,margin=0.95,v=1)
         | 
| 623 | 
            +
                        Statsample::proportion_confidence_interval_t(proportion(v), @valid_data.size, n_poblation, margin)
         | 
| 624 | 
            +
                    end
         | 
| 625 | 
            +
                    def proportion_confidence_interval_z(n_poblation,margin=0.95,v=1)
         | 
| 626 | 
            +
                        Statsample::proportion_confidence_interval_z(proportion(v), @valid_data.size, n_poblation, margin)
         | 
| 486 627 | 
             
                    end
         | 
| 487 628 |  | 
| 488 | 
            -
                     | 
| 489 | 
            -
                         | 
| 490 | 
            -
             | 
| 491 | 
            -
             | 
| 492 | 
            -
                    # <tt>dir</tt> could be :horizontal or :vertical
         | 
| 493 | 
            -
                    def to_matrix(dir=:horizontal)
         | 
| 494 | 
            -
                        case dir
         | 
| 495 | 
            -
                        when :horizontal
         | 
| 496 | 
            -
                            Matrix[@data]
         | 
| 497 | 
            -
                        when :vertical
         | 
| 498 | 
            -
                            Matrix.columns([@data])
         | 
| 629 | 
            +
                    self.instance_methods.find_all{|met| met=~/_slow$/}.each do |met|
         | 
| 630 | 
            +
                        met_or=met.gsub("_slow","")
         | 
| 631 | 
            +
                        if !self.method_defined?(met_or)
         | 
| 632 | 
            +
                            alias_method met_or, met
         | 
| 499 633 | 
             
                        end
         | 
| 500 634 | 
             
                    end
         | 
| 501 | 
            -
             | 
| 502 | 
            -
             | 
| 503 | 
            -
             | 
| 504 | 
            -
             | 
| 505 | 
            -
                     | 
| 506 | 
            -
             | 
| 507 | 
            -
             | 
| 635 | 
            +
                ######
         | 
| 636 | 
            +
                ### Ordinal Methods
         | 
| 637 | 
            +
                ######
         | 
| 638 | 
            +
                
         | 
| 639 | 
            +
                    # Return the value of the percentil q
         | 
| 640 | 
            +
                    def percentil(q)
         | 
| 641 | 
            +
                        check_type :ordinal
         | 
| 642 | 
            +
                        sorted=@valid_data.sort
         | 
| 643 | 
            +
                        v= (n_valid * q).quo(100)
         | 
| 644 | 
            +
                        if(v.to_i!=v)
         | 
| 645 | 
            +
                            sorted[v.to_i]
         | 
| 508 646 | 
             
                        else
         | 
| 509 | 
            -
                             | 
| 647 | 
            +
                            (sorted[(v-0.5).to_i].to_f + sorted[(v+0.5).to_i]).quo(2)
         | 
| 510 648 | 
             
                        end
         | 
| 511 649 | 
             
                    end
         | 
| 512 | 
            -
                     | 
| 513 | 
            -
             | 
| 514 | 
            -
                         | 
| 515 | 
            -
                         | 
| 516 | 
            -
             | 
| 517 | 
            -
             | 
| 518 | 
            -
             | 
| 519 | 
            -
                        def frequencies #:nodoc:
         | 
| 520 | 
            -
                            _frequencies
         | 
| 521 | 
            -
                        end
         | 
| 522 | 
            -
            		end
         | 
| 523 | 
            -
                    def _frequencies #:nodoc:
         | 
| 524 | 
            -
                        @valid_data.inject(Hash.new) {|a,x|
         | 
| 525 | 
            -
                            a[x]||=0
         | 
| 526 | 
            -
                            a[x]=a[x]+1
         | 
| 650 | 
            +
                    # Returns a ranked vector.
         | 
| 651 | 
            +
                    def ranked(type=:ordinal)
         | 
| 652 | 
            +
                        check_type :ordinal
         | 
| 653 | 
            +
                        i=0
         | 
| 654 | 
            +
                        r=frequencies.sort.inject({}){|a,v|
         | 
| 655 | 
            +
                            a[v[0]]=(i+1 + i+v[1]).quo(2)
         | 
| 656 | 
            +
                            i+=v[1]
         | 
| 527 657 | 
             
                            a
         | 
| 528 658 | 
             
                        }
         | 
| 529 | 
            -
             | 
| 530 | 
            -
             | 
| 531 | 
            -
             | 
| 532 | 
            -
             | 
| 533 | 
            -
             | 
| 534 | 
            -
             | 
| 535 | 
            -
             | 
| 536 | 
            -
             | 
| 537 | 
            -
             | 
| 538 | 
            -
             | 
| 539 | 
            -
             | 
| 540 | 
            -
            			Gnuplot::Plot.new( gp ) do |plot|
         | 
| 541 | 
            -
            			plot.boxwidth("0.9 absolute")
         | 
| 542 | 
            -
            			plot.yrange("[0:#{y.max}]")
         | 
| 543 | 
            -
            			plot.style("fill  solid 1.00 border -1")
         | 
| 544 | 
            -
            			plot.set("xtics border in scale 1,0.5 nomirror rotate by -45  offset character 0, 0, 0")
         | 
| 545 | 
            -
            			plot.style("histogram")
         | 
| 546 | 
            -
            			plot.style("data histogram")
         | 
| 547 | 
            -
            			i=-1
         | 
| 548 | 
            -
            			plot.set("xtics","("+x.collect{|v| i+=1; sprintf("\"%s\" %d",v,i)}.join(",")+")")
         | 
| 549 | 
            -
            			plot.data << Gnuplot::DataSet.new( [y] ) do |ds|
         | 
| 550 | 
            -
            				end
         | 
| 551 | 
            -
            			end
         | 
| 552 | 
            -
            		end
         | 
| 553 | 
            -
            		
         | 
| 659 | 
            +
                        @data.collect {|c|
         | 
| 660 | 
            +
                            r[c]
         | 
| 661 | 
            +
                        }.to_vector(type)
         | 
| 662 | 
            +
                    end
         | 
| 663 | 
            +
                    # Return the median (percentil 50)
         | 
| 664 | 
            +
                    def median
         | 
| 665 | 
            +
                        check_type :ordinal
         | 
| 666 | 
            +
                        if HAS_GSL and @type==:scale
         | 
| 667 | 
            +
                            GSL::Stats::median_from_sorted_data(@gsl)
         | 
| 668 | 
            +
                        else
         | 
| 669 | 
            +
                        percentil(50)
         | 
| 554 670 | 
             
                        end
         | 
| 671 | 
            +
                    end
         | 
| 672 | 
            +
                    # Minimun value
         | 
| 673 | 
            +
                    def min; 
         | 
| 674 | 
            +
                        check_type :ordinal
         | 
| 675 | 
            +
                        @valid_data.min;
         | 
| 676 | 
            +
                    end
         | 
| 677 | 
            +
                        # Maximum value
         | 
| 678 | 
            +
                    def max; 
         | 
| 679 | 
            +
                        check_type :ordinal
         | 
| 680 | 
            +
                        @valid_data.max;
         | 
| 681 | 
            +
                    end
         | 
| 555 682 |  | 
| 556 | 
            -
             | 
| 557 | 
            -
                         | 
| 558 | 
            -
             | 
| 559 | 
            -
             | 
| 560 | 
            -
             | 
| 561 | 
            -
             | 
| 562 | 
            -
             | 
| 563 | 
            -
             | 
| 564 | 
            -
                        end
         | 
| 565 | 
            -
                        # Returns a hash with the distribution of proportions of
         | 
| 566 | 
            -
                        # the sample.
         | 
| 567 | 
            -
                        def proportions
         | 
| 568 | 
            -
                            frequencies.inject({}){|a,v|
         | 
| 569 | 
            -
                                a[v[0]] = v[1].quo(n_valid)
         | 
| 570 | 
            -
                                a
         | 
| 571 | 
            -
                            }
         | 
| 572 | 
            -
                        end
         | 
| 573 | 
            -
                        # Proportion of a given value.
         | 
| 574 | 
            -
                        def proportion(v=1)
         | 
| 575 | 
            -
                            frequencies[v].quo(@valid_data.size)
         | 
| 576 | 
            -
                        end
         | 
| 577 | 
            -
                        def summary(out="")
         | 
| 578 | 
            -
                            out << sprintf("n valid:%d\n",n_valid)
         | 
| 579 | 
            -
                            out <<  sprintf("factors:%s\n",factors.join(","))
         | 
| 580 | 
            -
                            out <<  "mode:"+mode.to_s+"\n"
         | 
| 581 | 
            -
                            out <<  "Distribution:\n"
         | 
| 582 | 
            -
                            frequencies.sort.each{|k,v|
         | 
| 583 | 
            -
                                key=labels.has_key?(k) ? labels[k]:k
         | 
| 584 | 
            -
                                out <<  sprintf("%s : %s (%0.2f%%)\n",key,v, (v.quo(n_valid))*100)
         | 
| 585 | 
            -
                            }
         | 
| 586 | 
            -
                            if(@type==:ordinal)
         | 
| 587 | 
            -
                            out << "median:"+median.to_s+"\n"
         | 
| 588 | 
            -
                            end
         | 
| 589 | 
            -
                            if(@type==:scale)
         | 
| 590 | 
            -
                            out << "mean:"+mean.to_s+"\n"
         | 
| 591 | 
            -
                            out << "sd:"+sd.to_s+"\n"
         | 
| 592 | 
            -
                            
         | 
| 683 | 
            +
                    def set_scale_data # :nodoc
         | 
| 684 | 
            +
                        @scale_data=@valid_data.collect do|x|
         | 
| 685 | 
            +
                            if x.is_a? Numeric
         | 
| 686 | 
            +
                                x
         | 
| 687 | 
            +
                            elsif x.is_a? String and x.to_i==x.to_f
         | 
| 688 | 
            +
                                x.to_i
         | 
| 689 | 
            +
                            else
         | 
| 690 | 
            +
                                x.to_f
         | 
| 593 691 | 
             
                            end
         | 
| 594 | 
            -
                            out
         | 
| 595 692 | 
             
                        end
         | 
| 596 | 
            -
                        
         | 
| 597 | 
            -
             | 
| 598 | 
            -
                        def variance_proportion(n_poblation, v=1)
         | 
| 599 | 
            -
                            Statsample::proportion_variance_sample(self.proportion(v), @valid_data.size, n_poblation)
         | 
| 600 | 
            -
                        end
         | 
| 601 | 
            -
                        # Variance of p, according to poblation size
         | 
| 602 | 
            -
                        def variance_total(n_poblation, v=1)
         | 
| 603 | 
            -
                            Statsample::total_variance_sample(self.proportion(v), @valid_data.size, n_poblation)
         | 
| 604 | 
            -
                        end
         | 
| 605 | 
            -
                        def proportion_confidence_interval_t(n_poblation,margin=0.95,v=1)
         | 
| 606 | 
            -
                            Statsample::proportion_confidence_interval_t(proportion(v), @valid_data.size, n_poblation, margin)
         | 
| 607 | 
            -
                        end
         | 
| 608 | 
            -
                        def proportion_confidence_interval_z(n_poblation,margin=0.95,v=1)
         | 
| 609 | 
            -
                            Statsample::proportion_confidence_interval_z(proportion(v), @valid_data.size, n_poblation, margin)
         | 
| 693 | 
            +
                        if HAS_GSL
         | 
| 694 | 
            +
                            @gsl=GSL::Vector.alloc(@scale_data) if @scale_data.size>0
         | 
| 610 695 | 
             
                        end
         | 
| 696 | 
            +
                    end
         | 
| 697 | 
            +
                    private :set_scale_data
         | 
| 698 | 
            +
                  
         | 
| 699 | 
            +
                    # The range of the data (max - min)
         | 
| 700 | 
            +
                    def range; 
         | 
| 701 | 
            +
                        check_type :scale
         | 
| 702 | 
            +
                        @scale_data.max - @scale_data.min
         | 
| 703 | 
            +
                    end
         | 
| 704 | 
            +
                    # The sum of values for the data
         | 
| 705 | 
            +
                    def sum
         | 
| 706 | 
            +
                        check_type :scale
         | 
| 707 | 
            +
                        @scale_data.inject(0){|a,x|x+a} ; 
         | 
| 708 | 
            +
                    end
         | 
| 709 | 
            +
                    # The arithmetical mean of data
         | 
| 710 | 
            +
                    def mean
         | 
| 711 | 
            +
                        check_type :scale
         | 
| 712 | 
            +
                        sum.to_f.quo(n_valid)
         | 
| 713 | 
            +
                    end
         | 
| 714 | 
            +
                    # Sum of squares for the data around a value.
         | 
| 715 | 
            +
                    # By default, this value is the  mean
         | 
| 716 | 
            +
                    #   ss= sum{(xi-m)^2}
         | 
| 717 | 
            +
                    # 
         | 
| 718 | 
            +
                    def sum_of_squares(m=nil)
         | 
| 719 | 
            +
                        check_type :scale
         | 
| 720 | 
            +
                        m||=mean
         | 
| 721 | 
            +
                        @scale_data.inject(0){|a,x| a+(x-m).square}
         | 
| 722 | 
            +
                    end
         | 
| 723 | 
            +
                    
         | 
| 724 | 
            +
                    # Sum of squared deviation
         | 
| 725 | 
            +
                    def sum_of_squared_deviation
         | 
| 726 | 
            +
                        check_type :scale
         | 
| 727 | 
            +
                        @scale_data.inject(0) {|a,x| x.square+a} - (sum.square.quo(n_valid))
         | 
| 728 | 
            +
                    end
         | 
| 729 | 
            +
                    
         | 
| 730 | 
            +
                    # Population variance (denominator N)
         | 
| 731 | 
            +
                    def variance_population(m=nil)
         | 
| 732 | 
            +
                        check_type :scale
         | 
| 733 | 
            +
                        m||=mean
         | 
| 734 | 
            +
                        squares=@scale_data.inject(0){|a,x| x.square+a}
         | 
| 735 | 
            +
                        squares.quo(n_valid) - m.square
         | 
| 736 | 
            +
                    end
         | 
| 737 | 
            +
                    
         | 
| 738 | 
            +
                
         | 
| 739 | 
            +
                    # Population Standard deviation (denominator N)
         | 
| 740 | 
            +
                    def standard_deviation_population(m=nil)
         | 
| 741 | 
            +
                        check_type :scale
         | 
| 611 742 |  | 
| 612 | 
            -
             | 
| 613 | 
            -
             | 
| 614 | 
            -
             | 
| 615 | 
            -
            				alias_method met_or, met
         | 
| 616 | 
            -
            			end
         | 
| 617 | 
            -
            		}
         | 
| 618 | 
            -
                    ######
         | 
| 619 | 
            -
                    ### Ordinal Methods
         | 
| 620 | 
            -
                    ######
         | 
| 743 | 
            +
                        Math::sqrt( variance_population(m) )
         | 
| 744 | 
            +
                    end
         | 
| 745 | 
            +
                    # Sample Variance (denominator n-1)
         | 
| 621 746 |  | 
| 622 | 
            -
                     | 
| 623 | 
            -
                         | 
| 624 | 
            -
             | 
| 625 | 
            -
             | 
| 626 | 
            -
             | 
| 627 | 
            -
             | 
| 628 | 
            -
                                sorted[v.to_i]
         | 
| 629 | 
            -
                            else
         | 
| 630 | 
            -
                                (sorted[(v-0.5).to_i].to_f + sorted[(v+0.5).to_i]).quo(2)
         | 
| 631 | 
            -
                            end
         | 
| 632 | 
            -
                        end
         | 
| 633 | 
            -
            			# Returns a ranked vector.
         | 
| 634 | 
            -
            			def ranked(type=:ordinal)
         | 
| 635 | 
            -
                            check_type :ordinal
         | 
| 636 | 
            -
            				i=0
         | 
| 637 | 
            -
            				r=frequencies.sort.inject({}){|a,v|
         | 
| 638 | 
            -
            					a[v[0]]=(i+1 + i+v[1]).quo(2)
         | 
| 639 | 
            -
            					i+=v[1]
         | 
| 640 | 
            -
            					a
         | 
| 641 | 
            -
            				}
         | 
| 642 | 
            -
            				@data.collect {|c|
         | 
| 643 | 
            -
            					r[c]
         | 
| 644 | 
            -
            				}.to_vector(type)
         | 
| 645 | 
            -
            			end
         | 
| 646 | 
            -
                        # Return the median (percentil 50)
         | 
| 647 | 
            -
                        def median
         | 
| 648 | 
            -
                            check_type :ordinal
         | 
| 649 | 
            -
                            if HAS_GSL and @type==:scale
         | 
| 650 | 
            -
                                GSL::Stats::median_from_sorted_data(@gsl)
         | 
| 651 | 
            -
                            else
         | 
| 652 | 
            -
                            percentil(50)
         | 
| 653 | 
            -
                            end
         | 
| 654 | 
            -
                        end
         | 
| 655 | 
            -
                        # Minimun value
         | 
| 656 | 
            -
                        def min; 
         | 
| 657 | 
            -
                            check_type :ordinal
         | 
| 658 | 
            -
                            @valid_data.min;
         | 
| 659 | 
            -
                        end
         | 
| 660 | 
            -
                            # Maximum value
         | 
| 661 | 
            -
                        def max; 
         | 
| 662 | 
            -
                            check_type :ordinal
         | 
| 663 | 
            -
                            @valid_data.max;
         | 
| 664 | 
            -
                        end
         | 
| 747 | 
            +
                    def variance_sample(m=nil)
         | 
| 748 | 
            +
                        check_type :scale
         | 
| 749 | 
            +
                        
         | 
| 750 | 
            +
                        m||=mean
         | 
| 751 | 
            +
                        sum_of_squares(m).quo(n_valid - 1)
         | 
| 752 | 
            +
                    end
         | 
| 665 753 |  | 
| 666 | 
            -
                     | 
| 667 | 
            -
             | 
| 668 | 
            -
             | 
| 669 | 
            -
             | 
| 670 | 
            -
             | 
| 671 | 
            -
             | 
| 672 | 
            -
             | 
| 673 | 
            -
             | 
| 674 | 
            -
             | 
| 754 | 
            +
                    # Sample Standard deviation (denominator n-1)
         | 
| 755 | 
            +
                    
         | 
| 756 | 
            +
                    def standard_deviation_sample(m=nil)
         | 
| 757 | 
            +
                        check_type :scale
         | 
| 758 | 
            +
                        
         | 
| 759 | 
            +
                        m||=m
         | 
| 760 | 
            +
                        Math::sqrt(variance_sample(m))
         | 
| 761 | 
            +
                    end
         | 
| 762 | 
            +
                    # Skewness of the sample
         | 
| 763 | 
            +
                    def skew
         | 
| 764 | 
            +
                        check_type :scale
         | 
| 765 | 
            +
                        m=mean
         | 
| 766 | 
            +
                        thirds=@scale_data.inject(0){|a,x| a+((x-mean)**3)}
         | 
| 767 | 
            +
                        thirds.quo((@scale_data.size-1)*sd**3)
         | 
| 768 | 
            +
                    end
         | 
| 769 | 
            +
                    # Kurtosis of the sample
         | 
| 770 | 
            +
                    def kurtosis
         | 
| 771 | 
            +
                        check_type :scale
         | 
| 772 | 
            +
                        
         | 
| 773 | 
            +
                        m=mean
         | 
| 774 | 
            +
                        thirds=@scale_data.inject(0){|a,x| a+((x-mean)**4)}
         | 
| 775 | 
            +
                        thirds.quo((@scale_data.size-1)*sd**4)
         | 
| 776 | 
            +
                        
         | 
| 777 | 
            +
                    end
         | 
| 778 | 
            +
                    # Product of all values on the sample
         | 
| 779 | 
            +
                    # 
         | 
| 780 | 
            +
                    def product
         | 
| 781 | 
            +
                        check_type :scale
         | 
| 782 | 
            +
                        @scale_data.inject(1){|a,x| a*x }
         | 
| 783 | 
            +
                    end
         | 
| 784 | 
            +
                    if HAS_GSL
         | 
| 785 | 
            +
                        %w{skew kurtosis variance_sample standard_deviation_sample variance_population standard_deviation_population mean sum}.each{|m|
         | 
| 786 | 
            +
                            m_nuevo=(m+"_slow").intern
         | 
| 787 | 
            +
                            alias_method m_nuevo, m.intern
         | 
| 675 788 | 
             
                        }
         | 
| 676 | 
            -
                         | 
| 677 | 
            -
             | 
| 789 | 
            +
                        def sum # :nodoc:
         | 
| 790 | 
            +
                        check_type :scale
         | 
| 791 | 
            +
                            
         | 
| 792 | 
            +
                            @gsl.sum
         | 
| 678 793 | 
             
                        end
         | 
| 679 | 
            -
             | 
| 680 | 
            -
             | 
| 681 | 
            -
             | 
| 682 | 
            -
             | 
| 683 | 
            -
             | 
| 684 | 
            -
             | 
| 685 | 
            -
             | 
| 794 | 
            +
                        def mean # :nodoc:
         | 
| 795 | 
            +
                        check_type :scale
         | 
| 796 | 
            +
                            
         | 
| 797 | 
            +
                            @gsl.mean
         | 
| 798 | 
            +
                        end				
         | 
| 799 | 
            +
                        def variance_sample(m=nil) # :nodoc:
         | 
| 800 | 
            +
                        check_type :scale
         | 
| 801 | 
            +
                            
         | 
| 802 | 
            +
                            m||=mean
         | 
| 803 | 
            +
                            @gsl.variance_m
         | 
| 686 804 | 
             
                        end
         | 
| 687 | 
            -
                         | 
| 688 | 
            -
                        def sum
         | 
| 689 | 
            -
                            check_type :scale
         | 
| 690 | 
            -
                            @scale_data.inject(0){|a,x|x+a} ; end
         | 
| 691 | 
            -
                        # The arithmetical mean of data
         | 
| 692 | 
            -
            			def mean
         | 
| 693 | 
            -
                            check_type :scale
         | 
| 694 | 
            -
                            sum.to_f.quo(n_valid)
         | 
| 695 | 
            -
            			end
         | 
| 696 | 
            -
                        # Sum of squares for the data around a value.
         | 
| 697 | 
            -
                        # By default, this value is the  mean
         | 
| 698 | 
            -
                        #   ss= sum{(xi-m)^2}
         | 
| 699 | 
            -
                        # 
         | 
| 700 | 
            -
                        def sum_of_squares(m=nil)
         | 
| 805 | 
            +
                        def standard_deviation_sample(m=nil) # :nodoc:
         | 
| 701 806 | 
             
                            check_type :scale
         | 
| 702 807 | 
             
                            m||=mean
         | 
| 703 | 
            -
                            @ | 
| 808 | 
            +
                            @gsl.sd(m)
         | 
| 704 809 | 
             
                        end
         | 
| 705 810 |  | 
| 706 | 
            -
             | 
| 707 | 
            -
             | 
| 708 | 
            -
                            check_type :scale
         | 
| 709 | 
            -
            				@scale_data.inject(0) {|a,x| x.square+a} - (sum.square.quo(n_valid))
         | 
| 710 | 
            -
            			end
         | 
| 711 | 
            -
                        
         | 
| 712 | 
            -
                        # Population variance (denominator N)
         | 
| 713 | 
            -
                        def variance_population(m=nil)
         | 
| 714 | 
            -
                            check_type :scale
         | 
| 811 | 
            +
                        def variance_population(m=nil) # :nodoc:
         | 
| 812 | 
            +
                        check_type :scale    
         | 
| 715 813 | 
             
                            m||=mean
         | 
| 716 | 
            -
             | 
| 717 | 
            -
                            squares.quo(n_valid) - m.square
         | 
| 814 | 
            +
                            @gsl.variance_with_fixed_mean(m)
         | 
| 718 815 | 
             
                        end
         | 
| 719 | 
            -
             | 
| 720 | 
            -
            		
         | 
| 721 | 
            -
                        # Population Standard deviation (denominator N)
         | 
| 722 | 
            -
                        def standard_deviation_population(m=nil)
         | 
| 816 | 
            +
                        def standard_deviation_population(m=nil) # :nodoc:
         | 
| 723 817 | 
             
                            check_type :scale
         | 
| 724 | 
            -
                            
         | 
| 725 | 
            -
                             | 
| 818 | 
            +
                            m||=mean
         | 
| 819 | 
            +
                            @gsl.sd_with_fixed_mean(m)
         | 
| 726 820 | 
             
                        end
         | 
| 727 | 
            -
                         | 
| 728 | 
            -
                        
         | 
| 729 | 
            -
            			def variance_sample(m=nil)
         | 
| 821 | 
            +
                        def skew # :nodoc:
         | 
| 730 822 | 
             
                            check_type :scale
         | 
| 731 | 
            -
                            
         | 
| 732 | 
            -
            				m||=mean
         | 
| 733 | 
            -
            				sum_of_squares(m).quo(n_valid - 1)
         | 
| 734 | 
            -
            			end
         | 
| 735 | 
            -
             | 
| 736 | 
            -
                        # Sample Standard deviation (denominator n-1)
         | 
| 737 | 
            -
                        
         | 
| 738 | 
            -
            			def standard_deviation_sample(m=nil)
         | 
| 739 | 
            -
                            check_type :scale
         | 
| 740 | 
            -
                            
         | 
| 741 | 
            -
            				m||=m
         | 
| 742 | 
            -
            				Math::sqrt(variance_sample(m))
         | 
| 743 | 
            -
            			end
         | 
| 744 | 
            -
                        # Skewness of the sample
         | 
| 745 | 
            -
            			def skew
         | 
| 746 | 
            -
                            check_type :scale
         | 
| 747 | 
            -
            				m=mean
         | 
| 748 | 
            -
            				thirds=@scale_data.inject(0){|a,x| a+((x-mean)**3)}
         | 
| 749 | 
            -
            				thirds.quo((@scale_data.size-1)*sd**3)
         | 
| 750 | 
            -
            			end
         | 
| 751 | 
            -
                        # Kurtosis of the sample
         | 
| 752 | 
            -
            			def kurtosis
         | 
| 753 | 
            -
                            check_type :scale
         | 
| 754 | 
            -
                            
         | 
| 755 | 
            -
            				m=mean
         | 
| 756 | 
            -
            				thirds=@scale_data.inject(0){|a,x| a+((x-mean)**4)}
         | 
| 757 | 
            -
            				thirds.quo((@scale_data.size-1)*sd**4)
         | 
| 758 | 
            -
            				
         | 
| 759 | 
            -
            			end
         | 
| 760 | 
            -
                        # Product of all values on the sample
         | 
| 761 | 
            -
                        # 
         | 
| 762 | 
            -
            			def product
         | 
| 763 | 
            -
                            check_type :scale
         | 
| 764 | 
            -
                            @scale_data.inject(1){|a,x| a*x }
         | 
| 823 | 
            +
                            @gsl.skew
         | 
| 765 824 | 
             
                        end
         | 
| 766 | 
            -
             | 
| 767 | 
            -
                            %w{skew kurtosis variance_sample standard_deviation_sample variance_population standard_deviation_population mean sum}.each{|m|
         | 
| 768 | 
            -
                                m_nuevo=(m+"_slow").intern
         | 
| 769 | 
            -
                                alias_method m_nuevo, m.intern
         | 
| 770 | 
            -
                            }
         | 
| 771 | 
            -
            				def sum # :nodoc:
         | 
| 825 | 
            +
                        def kurtosis # :nodoc:
         | 
| 772 826 | 
             
                            check_type :scale
         | 
| 773 | 
            -
             | 
| 774 | 
            -
             | 
| 775 | 
            -
             | 
| 776 | 
            -
             | 
| 777 | 
            -
             | 
| 778 | 
            -
             | 
| 779 | 
            -
            					@gsl.mean
         | 
| 780 | 
            -
            				end				
         | 
| 781 | 
            -
            				def variance_sample(m=nil) # :nodoc:
         | 
| 827 | 
            +
                            @gsl.kurtosis
         | 
| 828 | 
            +
                        end
         | 
| 829 | 
            +
                        # Create a GSL::Histogram
         | 
| 830 | 
            +
                        # With a fixnum, creates X bins within the range of data
         | 
| 831 | 
            +
                        # With an Array, each value will be a cut point
         | 
| 832 | 
            +
                        def histogram(bins=10)
         | 
| 782 833 | 
             
                            check_type :scale
         | 
| 783 | 
            -
             | 
| 784 | 
            -
             | 
| 785 | 
            -
             | 
| 786 | 
            -
             | 
| 787 | 
            -
             | 
| 788 | 
            -
                                 | 
| 789 | 
            -
            					m||=mean
         | 
| 790 | 
            -
            					@gsl.sd(m)
         | 
| 791 | 
            -
            				end
         | 
| 792 | 
            -
            				
         | 
| 793 | 
            -
            				def variance_population(m=nil) # :nodoc:
         | 
| 794 | 
            -
                            check_type :scale    
         | 
| 795 | 
            -
            					m||=mean
         | 
| 796 | 
            -
            					@gsl.variance_with_fixed_mean(m)
         | 
| 797 | 
            -
            				end
         | 
| 798 | 
            -
            				def standard_deviation_population(m=nil) # :nodoc:
         | 
| 799 | 
            -
                                check_type :scale
         | 
| 800 | 
            -
            					m||=mean
         | 
| 801 | 
            -
            					@gsl.sd_with_fixed_mean(m)
         | 
| 802 | 
            -
            				end
         | 
| 803 | 
            -
            				def skew # :nodoc:
         | 
| 804 | 
            -
                                check_type :scale
         | 
| 805 | 
            -
            					@gsl.skew
         | 
| 806 | 
            -
            				end
         | 
| 807 | 
            -
            				def kurtosis # :nodoc:
         | 
| 808 | 
            -
                                check_type :scale
         | 
| 809 | 
            -
            					@gsl.kurtosis
         | 
| 810 | 
            -
            				end
         | 
| 811 | 
            -
                            # Create a GSL::Histogram
         | 
| 812 | 
            -
                            # With a fixnum, creates X bins within the range of data
         | 
| 813 | 
            -
                            # With an Array, each value will be a cut point
         | 
| 814 | 
            -
                            def histogram(bins=10)
         | 
| 815 | 
            -
                                check_type :scale
         | 
| 816 | 
            -
                                if bins.is_a? Array
         | 
| 817 | 
            -
                                    h=GSL::Histogram.alloc(bins)                        
         | 
| 818 | 
            -
                                else
         | 
| 819 | 
            -
                                    # ugly patch. The upper limit for a bin has the form
         | 
| 820 | 
            -
                                    # x < range
         | 
| 821 | 
            -
                                    h=GSL::Histogram.alloc(bins,[@data.min,@data.max+0.0001])
         | 
| 822 | 
            -
                                end
         | 
| 823 | 
            -
                                h.increment(@gsl)
         | 
| 824 | 
            -
            					 h
         | 
| 825 | 
            -
                            end
         | 
| 826 | 
            -
                            def plot_histogram(bins=10,options="")
         | 
| 827 | 
            -
                                check_type :scale
         | 
| 828 | 
            -
                                self.histogram(bins).graph(options)
         | 
| 834 | 
            +
                            if bins.is_a? Array
         | 
| 835 | 
            +
                                h=GSL::Histogram.alloc(bins)                        
         | 
| 836 | 
            +
                            else
         | 
| 837 | 
            +
                                # ugly patch. The upper limit for a bin has the form
         | 
| 838 | 
            +
                                # x < range
         | 
| 839 | 
            +
                                h=GSL::Histogram.alloc(bins,[@valid_data.min,@valid_data.max+0.0001])
         | 
| 829 840 | 
             
                            end
         | 
| 830 | 
            -
             | 
| 831 | 
            -
             | 
| 832 | 
            -
             | 
| 833 | 
            -
                         | 
| 834 | 
            -
                        # Calculed with the sample standard deviation
         | 
| 835 | 
            -
            			def coefficient_of_variation
         | 
| 841 | 
            +
                            h.increment(@gsl)
         | 
| 842 | 
            +
                             h
         | 
| 843 | 
            +
                        end
         | 
| 844 | 
            +
                        def plot_histogram(bins=10,options="")
         | 
| 836 845 | 
             
                            check_type :scale
         | 
| 837 | 
            -
             | 
| 838 | 
            -
             | 
| 839 | 
            -
             | 
| 840 | 
            -
             | 
| 841 | 
            -
             | 
| 842 | 
            -
             | 
| 843 | 
            -
             | 
| 844 | 
            -
             | 
| 845 | 
            -
             | 
| 846 | 
            -
             | 
| 846 | 
            +
                            self.histogram(bins).graph(options)
         | 
| 847 | 
            +
                        end
         | 
| 848 | 
            +
                    
         | 
| 849 | 
            +
                    end
         | 
| 850 | 
            +
                    
         | 
| 851 | 
            +
                    # Coefficient of variation
         | 
| 852 | 
            +
                    # Calculed with the sample standard deviation
         | 
| 853 | 
            +
                    def coefficient_of_variation
         | 
| 854 | 
            +
                        check_type :scale
         | 
| 855 | 
            +
                        standard_deviation_sample.quo(mean)
         | 
| 856 | 
            +
                    end
         | 
| 857 | 
            +
                    
         | 
| 858 | 
            +
                    alias_method :sdp, :standard_deviation_population
         | 
| 859 | 
            +
                    alias_method :sds, :standard_deviation_sample
         | 
| 860 | 
            +
                    alias_method :cov, :coefficient_of_variation
         | 
| 861 | 
            +
                    alias_method :variance, :variance_sample
         | 
| 862 | 
            +
                    alias_method :sd, :standard_deviation_sample
         | 
| 863 | 
            +
                    alias_method :ss, :sum_of_squares
         | 
| 864 | 
            +
                end
         | 
| 847 865 | 
             
            end
         |