stash-merritt 0.1.0 → 0.1.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/.gitignore +5 -0
- data/README.md +45 -23
- data/lib/stash/merritt/module_info.rb +1 -1
- data/lib/stash/merritt/submission_package.rb +13 -23
- data/spec/unit/stash/merritt/submission_job_spec.rb +54 -23
- data/stash-merritt.iml +4 -3
- metadata +3 -4
- data/Gemfile.lock +0 -326
checksums.yaml
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 46447b0a05d80b4e82864971bc91aba395e786ea
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data.tar.gz: 0b191749296cf778f3fad1908b95a0cd13a6b93c
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 5adf6893eeaa38f0ddaab555002bb521d3654d733053a1a71235a5f9b5dacf7103d03c44118d737942bb970e985eb72183b0681e6d852a09ccd08bdf0ba182fc
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data.tar.gz: 4d38f341c4495e1394b549483582978c745d99d5b869dfdd75898163a795f9eda5890a5d4ddf697ddcbd762e1bd1ca004e5099caeb88f4a961d23a67c8aea29e
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data/.gitignore
CHANGED
data/README.md
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# Stash::Merritt
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[![Build Status](https://travis-ci.org/CDLUC3/stash-merritt.svg
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[![Code Climate](https://codeclimate.com/github/CDLUC3/stash-merritt.svg)](https://codeclimate.com/github/CDLUC3/stash-merritt)
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[![Build Status](https://travis-ci.org/CDLUC3/stash-merritt.svg)](https://travis-ci.org/CDLUC3/stash-merritt)
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[![Code Climate](https://codeclimate.com/github/CDLUC3/stash-merritt.svg)](https://codeclimate.com/github/CDLUC3/stash-merritt)
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[![Inline docs](http://inch-ci.org/github/CDLUC3/stash-merritt.svg)](http://inch-ci.org/github/CDLUC3/stash-merritt)
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Packaging and
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## Submission process
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- Stash wrapper XML
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1.
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The `Stash::Merritt::SubmissionJob` class does the following:
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1. if no identifier is present, mint a new DOI with EZID
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(using the [ezid-client](https://github.com/duke-libraries/ezid-client) gem)
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and assign it to the resource
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1. generate a ZIP package containing:
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| filename | purpose |
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| -------- | ------- |
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| `stash-wrapper.xml` | [Stash wrapper](https://github.com/CDLUC3/stash-wrapper), including [Datacite 4](https://schema.datacite.org/meta/kernel-4.0/) XML |
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| `mrt-datacite.xml` | [Datacite 3](https://schema.datacite.org/meta/kernel-3/) XML, for Merritt internal use. |
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| `mrt-oaidc.xml` | Dublin Core metadata, packaged in [oai_dc](https://www.openarchives.org/OAI/openarchivesprotocol.html#dublincore) format for [OAI-PMH](https://www.openarchives.org/OAI/openarchivesprotocol.html) compliance |
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| `mrt-dataone-manifest.txt` | legacy [DataONE manifest](http://cdluc3.github.io/dash/release-criteria/)* |
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| `mrt-delete.txt` | list of files to be deleted in this version, if any |
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\* Note that the DataONE manifest is generated for all tenants, not just DataONE.
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1. using the [stash-sword](https://github.com/CDLUC3/stash-sword) gem, submit the
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package to Merritt via [SWORD 2.0](http://swordapp.github.io/SWORDv2-Profile/SWORDProfile.html);
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update the `download_uri` and `update_uri` of the resource if not present
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1. set the resource `version_zipfile`
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1. again via [ezid-client](https://github.com/duke-libraries/ezid-client), update the
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target URL (landing page) and Datacite 3 metadata for the DOI
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1. clean up uploads and other temporary files
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1. returns a successful `SubmissionResult`
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If at any point one of these steps fails, the job exits with a failed `SubmissionResult`.
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## Development
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### Dependencies
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stash-merritt expects to find the [stash_engine](https://github.com/CDLUC3/stash_engine) and
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[stash_datacite](https://github.com/CDLUC3/stash_datacite) source locally under
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a sister directory `stash_engines`:
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```
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┬── stash-merritt
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└── stash_engines
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├── stash_datacite
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└── stash_engine
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```
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### Test database creation
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For compatibility with Travis, you need
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```
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$ mysql -u root
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mysql> create user 'travis'@'localhost';
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mysql> create database
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mysql> use
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mysql> grant all on
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mysql> create database stash_merritt character set UTF8mb4 collate utf8mb4_bin;
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mysql> use stash_merritt;
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mysql> grant all on stash_merritt.* to 'travis'@'localhost';
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```
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zipfile_path = File.join(workdir, "#{resource_id}_archive.zip")
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Zip::File.open(zipfile_path, Zip::File::CREATE) do |zipfile|
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builders.each { |builder| write_to_zipfile(zipfile, builder) }
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-
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new_uploads.each { |upload| add_to_zipfile(zipfile, upload) }
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end
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zipfile_path
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end
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def add_to_zipfile(zipfile, upload)
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path = File.join(resource.upload_dir, upload.upload_file_name)
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raise ArgumentError
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raise ArgumentError, "Upload file '#{upload.upload_file_name}' not found in directory #{resource.upload_dir}" unless File.exist?(path)
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zipfile.add(upload.upload_file_name, path)
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end
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def builders
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def mrt_datacite_builder
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@mrt_datacite_builder ||= MerrittDataciteBuilder.new(datacite_xml_factory)
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end
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def mrt_oaidc_builder
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@mrt_oaidc_builder ||= MerrittOAIDCBuilder.new(resource_id: resource_id)
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end
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def mrt_dataone_manifest_builder
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@mrt_dataone_manifest_builder ||= DataONEManifestBuilder.new(uploads)
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end
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def mrt_delete_builder
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@mrt_delete_builder ||= MerrittDeleteBuilder.new(resource_id: resource_id)
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@builders ||= [
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StashWrapperBuilder.new(dcs_resource: dc4_resource, version_number: version_number, uploads: uploads),
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MerrittDataciteBuilder.new(datacite_xml_factory),
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MerrittOAIDCBuilder.new(resource_id: resource_id),
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DataONEManifestBuilder.new(uploads),
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MerrittDeleteBuilder.new(resource_id: resource_id)
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]
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end
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def total_size_bytes
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resource.current_file_uploads
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end
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def new_uploads
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resource.new_file_uploads
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end
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def datacite_xml_factory
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@datacite_xml_factory ||= Datacite::Mapping::DataciteXMLFactory.new(doi_value: resource.identifier_value, se_resource_id: resource_id, total_size_bytes: total_size_bytes, version: version_number)
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end
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end
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describe :submit! do
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describe 'create' do
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it 'mints an ID if needed' do
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expect(resource).to receive(:identifier).and_return(nil)
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expect(ezid_helper).to receive(:mint_id).and_return('doi:10.123/456')
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expect(resource).to receive(:ensure_identifier).with('doi:10.123/456')
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job.submit!
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end
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it 'submits the package' do
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expect(sword_helper).to receive(:submit!)
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job.submit!
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end
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it 'updates the metadata' do
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dc3_xml = '<resource/>'
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expect(package).to receive(:dc3_xml).and_return(dc3_xml)
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expect(ezid_helper).to receive(:update_metadata).with(dc3_xml: dc3_xml, landing_page_url: landing_page_url)
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job.submit!
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end
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it 'cleans up the package' do
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expect(package).to receive(:cleanup!)
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job.submit!
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end
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it 'returns a result' do
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result = job.submit!
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expect(result).to be_a(Stash::Repo::SubmissionResult)
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expect(result.success?).to be_truthy
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end
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end
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describe 'update' do
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before(:each) do
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expect(resource).to receive(:update_uri).and_return('http://example.sword.edu/doi:10.123/456')
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end
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it 'submits the package' do
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expect(sword_helper).to receive(:submit!)
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job.submit!
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end
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it 'updates the metadata' do
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dc3_xml = '<resource/>'
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expect(package).to receive(:dc3_xml).and_return(dc3_xml)
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expect(ezid_helper).to receive(:update_metadata).with(dc3_xml: dc3_xml, landing_page_url: landing_page_url)
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job.submit!
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end
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it 'cleans up the package' do
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expect(package).to receive(:cleanup!)
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job.submit!
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end
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it 'returns a result' do
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result = job.submit!
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expect(result).to be_a(Stash::Repo::SubmissionResult)
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expect(result.success?).to be_truthy
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end
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end
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describe 'error handling' do
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data/stash-merritt.iml
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<component name="NewModuleRootManager" inherit-compiler-output="true">
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<exclude-output />
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<content url="file://$MODULE_DIR$" />
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<content url="file://$MODULE_DIR$/../stash_engines/stash_datacite" />
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<content url="file://$MODULE_DIR$/../stash_engines/stash_engine" />
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<orderEntry type="jdk" jdkName="ruby-2.2.5-p319" jdkType="RUBY_SDK" />
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<orderEntry type="sourceFolder" forTests="false" />
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<orderEntry type="library" scope="PROVIDED" name="arel (v6.0.4, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="ast (v2.3.0, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="builder (v3.2.3, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="bundler (v1.
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<orderEntry type="library" scope="PROVIDED" name="bundler (v1.14.3, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="carrierwave (v0.10.0, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="colorize (v0.8.1, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="concurrent-ruby (v1.0.4, ruby-2.2.5-p319) [gem]" level="application" />
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@@ -92,7 +93,7 @@
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<orderEntry type="library" scope="PROVIDED" name="omniauth-oauth2 (v1.3.1, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="omniauth-orcid (v1.0.38, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="omniauth-shibboleth (v1.2.1, ruby-2.2.5-p319) [gem]" level="application" />
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-
<orderEntry type="library" scope="PROVIDED" name="parser (v2.
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<orderEntry type="library" scope="PROVIDED" name="parser (v2.4.0.0, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="powerpack (v0.1.1, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="public_suffix (v2.0.5, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="rack (v1.6.5, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="rspec-support (v3.5.0, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="rubocop (v0.47.1, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="ruby-progressbar (v1.8.1, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="rubyzip (v1.2.
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<orderEntry type="library" scope="PROVIDED" name="rubyzip (v1.2.1, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="safe_yaml (v1.0.4, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="sass (v3.4.23, ruby-2.2.5-p319) [gem]" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="simplecov (v0.9.2, ruby-2.2.5-p319) [gem]" level="application" />
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metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: stash-merritt
|
3
3
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version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
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version: 0.1.1
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platform: ruby
|
6
6
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authors:
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- David Moles
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8
8
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autorequire:
|
9
9
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bindir: bin
|
10
10
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cert_chain: []
|
11
|
-
date: 2017-02-
|
11
|
+
date: 2017-02-23 00:00:00.000000000 Z
|
12
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dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
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name: rubyzip
|
@@ -246,7 +246,6 @@ files:
|
|
246
246
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- ".ruby-version"
|
247
247
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- ".travis.yml"
|
248
248
|
- Gemfile
|
249
|
-
- Gemfile.lock
|
250
249
|
- LICENSE.md
|
251
250
|
- README.md
|
252
251
|
- Rakefile
|
@@ -289,7 +288,7 @@ files:
|
|
289
288
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- stash-merritt.iml
|
290
289
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- stash-merritt.ipr
|
291
290
|
- travis-local-deps.sh
|
292
|
-
homepage: http://github.com/stash-merritt
|
291
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filesize (~> 0.1.1)
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font-awesome-rails
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jquery-rails
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jquery-turbolinks
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jquery-ui-rails
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kaminari
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omniauth (~> 1.2.2)
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omniauth-orcid (~> 1.0.21)
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omniauth-shibboleth (~> 1.2.1)
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rails (~> 4.2.4)
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redcarpet (~> 3.3)
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rails-deprecated_sanitizer (1.0.3)
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simplecov (0.9.2)
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docile (~> 1.1.0)
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multi_json (~> 1.0)
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simplecov-html (~> 0.9.0)
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simplecov-console (0.2.0)
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colorize
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simplecov
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simplecov-html (0.9.0)
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bundler (~> 1.7)
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database_cleaner (~> 1.5)
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simplecov (~> 0.9.2)
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simplecov-console (~> 0.2.0)
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stash_datacite!
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stash_engine!
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webmock (~> 1.24)
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1.13.7
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