sstat 0.0.2 → 0.0.3

data/ext/sstat/lib/survival_utility.h

@@ -88,128 +88,7 @@ int find_first_index_has(double* arr, int size, double value)
 	return -1;
 }
 
-struct Group_N group_N_self_range(double* time, int* censored, int size)
-{
-	int i, count_at, uncensored_num_at, censored_num_at;
-	double tmp, time_at;
-
-	// sort time and censored based on time together, time can censored array
-	struct point* time_censored_array = (struct point*) malloc(size * sizeof(struct point));
-
-	//censored, if censored[] is positive
-	for (i = 0; i < size; i++)
-	{
-		time_censored_array[i].x = time[i];
-		if (censored[i] > 0)
-			time_censored_array[i].y = 1;
-		else
-			time_censored_array[i].y = -1;
-	}
-
-	qsort(time_censored_array, size, sizeof(struct point), &point_compare_x);
-
-	//count unique uncensored time point
-	int count = 0;
-	for (i = 0; i < size; i++)
-	{	//uncensored
-		if (time_censored_array[i].y < 0)
-		{
-			if (count == 0)
-			{
-				count++;
-				tmp = time_censored_array[i].x;
-			}
-
-			if (count > 0)
-			{	//unique
-				if (time_censored_array[i].x != tmp)
-				{
-					count++;
-					tmp = time_censored_array[i].x;
-				}
-			}
-		}
-	}
-
-	double* unique_uncensored_time = (double *) malloc(count * sizeof(double));
-
-	count = 0;
-
-	for (i = 0; i < size; i++)
-	{
-		if (time_censored_array[i].y < 0)
-		{
-			if (count == 0)
-			{
-				count++;
-				unique_uncensored_time[count] = time_censored_array[i].x;
-				tmp = time_censored_array[i].x;
-
-			}
-
-			if (count > 0)
-			{
-				if (time_censored_array[i].x != tmp)
-				{
-					unique_uncensored_time[count] = time_censored_array[i].x;
-
-					count++;
-					tmp = time_censored_array[i].x;
-				}
-			}
-		}
-	}
-
-	int* uncensored_num = (int *) malloc(count * sizeof(int));
-	int* censored_num = (int *) malloc(count * sizeof(int));
-
-	//record current time point
-	time_at = unique_uncensored_time[0];
-	count_at = 0;
-	uncensored_num_at = 0;
-	censored_num_at = 0;
-
-	for (i = 0; i < size; i++)
-	{
-		if (time_censored_array[i].x <= time_at)
-		{
-			if (time_censored_array[i].y > 0)
-				censored_num_at++;
-			else
-				uncensored_num_at++;
-
-			if (i == size - 1)
-			{
-				uncensored_num[count_at] = uncensored_num_at;
-				censored_num[count_at] = censored_num_at;
-			}
-
-		} else {
-			uncensored_num[count_at] = uncensored_num_at;
-			censored_num[count_at] = censored_num_at;
-			count_at++;
-
-			uncensored_num_at = 0;
-			censored_num_at = 0;
-			time_at = unique_uncensored_time[count_at];
-			//we need to update here
-			if (time_censored_array[i].y > 0)
-				censored_num_at++;
-			else
-				uncensored_num_at++;
-		}
-	}
-
-	Group_N at_risk_result;
-	at_risk_result.uncensored = uncensored_num;
-	at_risk_result.censored = censored_num;
-	at_risk_result.size = count;
-	at_risk_result.time = unique_uncensored_time;
-	free(time_censored_array);
-	return at_risk_result;
-}
-
-struct Group_N group_N_given_range(double* time, int* censored, int size, double* unique_time, int unique_time_size)
+struct CENS_UC_NUM group_N_given_range(double* time, int* censored, int size, double* unique_time, int unique_time_size)
 {
 	int i, count_at, uncensored_num_at, censored_num_at;
 	double time_at;
@@ -278,7 +157,7 @@ struct Group_N group_N_given_range(double* time, int* censored, int size, double
 		}
 	}
 
-	Group_N at_risk_result;
+	CENS_UC_NUM at_risk_result;
 	at_risk_result.uncensored = uncensored_num;
 	at_risk_result.censored = censored_num;
 	at_risk_result.size = unique_time_size;

data/ext/sstat/lib/type_def.h

@@ -32,4 +32,19 @@ typedef struct array{
 	int size;
 } array;
 
+point* alloc_points(size_t size)
+{
+	return (struct point*) malloc(size * sizeof(struct point));
+}
+
+void print_curve(struct curve* curve)
+{
+	int i;
+	for(i = 0; i < curve->size; i++)
+	{
+		printf("x: %f  y: %f\n", curve->point_array[i].x, curve->point_array[i].y);
+	}
+
+}
+
 #endif

data/ext/sstat/sstat.c

@@ -17,6 +17,23 @@ static VALUE rb_percentile(VALUE self, VALUE array, VALUE target)
   return DBL2NUM(_percentile);
 }
 
+static VALUE rb_percentile_index(VALUE self, VALUE array, VALUE target)
+{
+  int size = RARRAY_LEN(array);
+  int i;
+  double _target = NUM2DBL(target);
+  int _percentile_index;
+  double* c_array = (double *)malloc(sizeof(double) * size);
+
+  for (i = 0; i < size; i++) {
+    c_array[i] = NUM2DBL(rb_ary_entry(array, i));
+  }
+  _percentile_index = precentile_index(c_array, size, _target);
+  free(c_array);
+
+  return INT2NUM(_percentile_index);
+}
+
 static VALUE rb_index_less_equal(VALUE self, VALUE array, VALUE target)
 {
   int size = RARRAY_LEN(array);
@@ -40,6 +57,7 @@ static VALUE rb_kaplan_meier(VALUE self, VALUE time, VALUE censored)
   int size = RARRAY_LEN(time);
   int i;
   struct curve KM_curve;
+  int proc_status;
   VALUE result;
   double* _time = (double *)malloc(sizeof(double) * size);
   int* _censored = (int *)malloc(sizeof(int) * size);
@@ -48,24 +66,72 @@ static VALUE rb_kaplan_meier(VALUE self, VALUE time, VALUE censored)
 
     _censored[i] = NUM2INT(rb_ary_entry(censored, i));
   }
-  KM_curve = kaplan_meier(_time, _censored, size);
 
-  VALUE KM_x = rb_ary_new2(KM_curve.size);
-  VALUE KM_y = rb_ary_new2(KM_curve.size);
+  proc_status = kaplan_meier(_time, _censored, size, &KM_curve);
+  if (proc_status == 0 )
+  {
+    VALUE KM_x = rb_ary_new2(KM_curve.size);
+    VALUE KM_y = rb_ary_new2(KM_curve.size);
+
+    for (i = 0; i < KM_curve.size; i++)
+    {
+      rb_ary_store(KM_x, i, DBL2NUM(KM_curve.point_array[i].x));
+      rb_ary_store(KM_y, i, DBL2NUM(KM_curve.point_array[i].y));
+    }
+
+    result = rb_hash_new();
+
+    rb_hash_aset(result, rb_str_new2("time"), KM_x);
+    rb_hash_aset(result, rb_str_new2("prob"), KM_y);
+
+    free(_time);
+    free(_censored);
+    free(KM_curve.point_array);
+    return result;
+  } else {
+    return Qfalse;
+  }
+}
+
+static VALUE rb_kaplan_meier_3p_extraploation(VALUE self, VALUE time, VALUE censored)
+{
+  int size = RARRAY_LEN(time);
+  int i;
+  struct curve KM_curve;
+  int proc_status;
+  VALUE result;
+  double* _time = (double *)malloc(sizeof(double) * size);
+  int* _censored = (int *)malloc(sizeof(int) * size);
+  for (i = 0; i < size; i++) {
+    _time[i] = NUM2DBL(rb_ary_entry(time, i));
+
+    _censored[i] = NUM2INT(rb_ary_entry(censored, i));
+  }
 
-  for (i = 0; i < KM_curve.size; i++)
+  proc_status = kaplan_meier_3p_extrapolation(_time, _censored, size, &KM_curve);
+  if (proc_status == 0 )
   {
-    rb_ary_store(KM_x, i, DBL2NUM(KM_curve.point_array[i].x));
-    rb_ary_store(KM_y, i, DBL2NUM(KM_curve.point_array[i].y));
+        VALUE KM_x = rb_ary_new2(KM_curve.size);
+    VALUE KM_y = rb_ary_new2(KM_curve.size);
+
+    for (i = 0; i < KM_curve.size; i++)
+    {
+      rb_ary_store(KM_x, i, DBL2NUM(KM_curve.point_array[i].x));
+      rb_ary_store(KM_y, i, DBL2NUM(KM_curve.point_array[i].y));
+    }
+
+    result = rb_hash_new();
+
+    rb_hash_aset(result, rb_str_new2("time"), KM_x);
+    rb_hash_aset(result, rb_str_new2("prob"), KM_y);
+
+    free(_time);
+    free(_censored);
+    free(KM_curve.point_array);
+    return result;
+  } else {
+    return Qfalse;
   }
-  result = rb_hash_new();
-  rb_hash_aset(result, rb_str_new2("time"), KM_x);
-  rb_hash_aset(result, rb_str_new2("prob"), KM_y);
-
-  free(_time);
-  free(_censored);
-  free(KM_curve.point_array);
-  return result;
 }
 
 static VALUE rb_log_rank_test(VALUE self, VALUE _time_1, VALUE _cens_1, VALUE _time_2, VALUE _cens_2)

data/ext/sstat/sstat.h

@@ -6,23 +6,34 @@
 #include "lib/survival.h"
 #include "lib/global_utility.h"
 #include "lib/distribution.h"
+#include "lib/histogram/histogram.h"
 
 static VALUE rb_percentile(VALUE self, VALUE arg, VALUE target);
+static VALUE rb_percentile_index(VALUE self, VALUE arg, VALUE target);
 static VALUE rb_index_less_equal(VALUE self, VALUE arg, VALUE target);
 static VALUE rb_kaplan_meier(VALUE self, VALUE time, VALUE censor);
+
+/* 
+* rb_kaplan_meier_3p_extraploation is not a standard Kaplan meier. 
+* A extrapolation based on the last 3 points is used in the calculation 
+*/
+static VALUE rb_kaplan_meier_3p_extraploation(VALUE self, VALUE time, VALUE censor);
+
 static VALUE rb_log_rank_test(VALUE self, VALUE time_1, VALUE censor_1,VALUE time_2, VALUE censor_2);
+
 static VALUE rb_cdf_unormal_Q(VALUE self, VALUE x);
 
-//rb_ary_storde(unmasked, i, INT2NUM(p ^ m));
 void Init_sstat() {
 	VALUE sstat_module = rb_define_module("SStat");
-	VALUE basic_class = rb_define_class_under(sstat_module, "Basic", rb_cObject);
-
-	rb_define_method(basic_class, "percentile", rb_percentile, 2);
-	rb_define_method(basic_class, "index_less_equal", rb_index_less_equal, 2);
-	rb_define_method(basic_class, "kaplan_meier", rb_kaplan_meier, 2);
-	rb_define_method(basic_class, "log_rank_test", rb_log_rank_test, 4);
-	rb_define_method(basic_class, "cdf_unormal_Q", rb_cdf_unormal_Q, 1);
+	VALUE surv_class = rb_define_class_under(sstat_module, "Surv", rb_cObject);
+	VALUE dist_class = rb_define_class_under(sstat_module, "Dist", rb_cObject);
+	rb_define_method(surv_class, "percentile_index", rb_percentile_index, 2);
+	rb_define_method(surv_class, "percentile", rb_percentile, 2);
+	rb_define_method(surv_class, "index_less_equal", rb_index_less_equal, 2);
+	rb_define_method(surv_class, "kaplan_meier", rb_kaplan_meier, 2);
+	rb_define_method(surv_class, "log_rank_test", rb_log_rank_test, 4);
+	rb_define_method(surv_class, "kaplan_meier_3p_extraploation", rb_kaplan_meier_3p_extraploation, 2);
+	rb_define_method(dist_class, "cdf_unormal_Q", rb_cdf_unormal_Q, 1);
 }
 
-#endif
+#endif

data/lib/simple_statistics/version.rb

@@ -1,3 +1,3 @@
 module SimpleStatistics
-  VERSION = "0.1.0"
+  VERSION = "0.0.3"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: sstat
 version: !ruby/object:Gem::Version
-  version: 0.0.2
+  version: 0.0.3
 platform: ruby
 authors:
 - Haipeng Li
@@ -10,24 +10,38 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-04-22 00:00:00.000000000 Z
+date: 2016-07-12 00:00:00.000000000 Z
 dependencies: []
 description: 
 email: haipeng3@ualberta.ca
 executables: []
 extensions:
+- ext/extconf.rb
 - ext/sstat/extconf.rb
 extra_rdoc_files: []
 files:
+- bin/#console#
 - bin/console
 - bin/setup
-- ext/sstat/Makefile
+- ext/extconf.rb
+- ext/lib/distribution.h
+- ext/lib/global_utility.h
+- ext/lib/survival.h
+- ext/lib/survival_def.h
+- ext/lib/survival_func.h
+- ext/lib/survival_utility.h
+- ext/lib/type_def.h
 - ext/sstat/extconf.rb
 - ext/sstat/lib/distribution.h
 - ext/sstat/lib/global_utility.h
+- ext/sstat/lib/histogram/histogram.h
+- ext/sstat/lib/histogram/histogram_error.h
+- ext/sstat/lib/histogram/histogram_stat.h
+- ext/sstat/lib/histogram/histogram_type.h
 - ext/sstat/lib/survival.h
 - ext/sstat/lib/survival_def.h
 - ext/sstat/lib/survival_func.h
+- ext/sstat/lib/survival_kaplan_meier.h
 - ext/sstat/lib/survival_utility.h
 - ext/sstat/lib/type_def.h
 - ext/sstat/sstat.c

data/ext/sstat/Makefile

@@ -1,238 +0,0 @@
-
-SHELL = /bin/sh
-
-# V=0 quiet, V=1 verbose.  other values don't work.
-V = 0
-Q1 = $(V:1=)
-Q = $(Q1:0=@)
-ECHO1 = $(V:1=@:)
-ECHO = $(ECHO1:0=@echo)
-
-#### Start of system configuration section. ####
-
-srcdir = .
-topdir = /home/chizhang/.rvm/rubies/ruby-2.1.1/include/ruby-2.1.0
-hdrdir = $(topdir)
-arch_hdrdir = /home/chizhang/.rvm/rubies/ruby-2.1.1/include/ruby-2.1.0/x86_64-linux
-PATH_SEPARATOR = :
-VPATH = $(srcdir):$(arch_hdrdir)/ruby:$(hdrdir)/ruby
-prefix = $(DESTDIR)/home/chizhang/.rvm/rubies/ruby-2.1.1
-rubysitearchprefix = $(rubylibprefix)/$(sitearch)
-rubyarchprefix = $(rubylibprefix)/$(arch)
-rubylibprefix = $(libdir)/$(RUBY_BASE_NAME)
-exec_prefix = $(prefix)
-vendorarchhdrdir = $(vendorhdrdir)/$(sitearch)
-sitearchhdrdir = $(sitehdrdir)/$(sitearch)
-rubyarchhdrdir = $(rubyhdrdir)/$(arch)
-vendorhdrdir = $(rubyhdrdir)/vendor_ruby
-sitehdrdir = $(rubyhdrdir)/site_ruby
-rubyhdrdir = $(includedir)/$(RUBY_VERSION_NAME)
-vendorarchdir = $(vendorlibdir)/$(sitearch)
-vendorlibdir = $(vendordir)/$(ruby_version)
-vendordir = $(rubylibprefix)/vendor_ruby
-sitearchdir = $(sitelibdir)/$(sitearch)
-sitelibdir = $(sitedir)/$(ruby_version)
-sitedir = $(rubylibprefix)/site_ruby
-rubyarchdir = $(rubylibdir)/$(arch)
-rubylibdir = $(rubylibprefix)/$(ruby_version)
-sitearchincludedir = $(includedir)/$(sitearch)
-archincludedir = $(includedir)/$(arch)
-sitearchlibdir = $(libdir)/$(sitearch)
-archlibdir = $(libdir)/$(arch)
-ridir = $(datarootdir)/$(RI_BASE_NAME)
-mandir = $(datarootdir)/man
-localedir = $(datarootdir)/locale
-libdir = $(exec_prefix)/lib
-psdir = $(docdir)
-pdfdir = $(docdir)
-dvidir = $(docdir)
-htmldir = $(docdir)
-infodir = $(datarootdir)/info
-docdir = $(datarootdir)/doc/$(PACKAGE)
-oldincludedir = $(DESTDIR)/usr/include
-includedir = $(prefix)/include
-localstatedir = $(prefix)/var
-sharedstatedir = $(prefix)/com
-sysconfdir = $(prefix)/etc
-datadir = $(datarootdir)
-datarootdir = $(prefix)/share
-libexecdir = $(exec_prefix)/libexec
-sbindir = $(exec_prefix)/sbin
-bindir = $(exec_prefix)/bin
-archdir = $(rubyarchdir)
-
-
-CC = gcc
-CXX = g++
-LIBRUBY = $(LIBRUBY_SO)
-LIBRUBY_A = lib$(RUBY_SO_NAME)-static.a
-LIBRUBYARG_SHARED = -Wl,-R -Wl,$(libdir) -L$(libdir) -l$(RUBY_SO_NAME)
-LIBRUBYARG_STATIC = -Wl,-R -Wl,$(libdir) -L$(libdir) -l$(RUBY_SO_NAME)-static
-empty =
-OUTFLAG = -o $(empty)
-COUTFLAG = -o $(empty)
-
-RUBY_EXTCONF_H = 
-cflags   =  $(optflags) $(debugflags) $(warnflags)
-optflags = -O3 -fno-fast-math
-debugflags = -ggdb3
-warnflags = -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wimplicit-function-declaration
-CCDLFLAGS = -fPIC
-CFLAGS   = $(CCDLFLAGS) $(cflags)  -fPIC -std=gnu99 -Wno-declaration-after-statement $(ARCH_FLAG)
-INCFLAGS = -I. -I$(arch_hdrdir) -I$(hdrdir)/ruby/backward -I$(hdrdir) -I$(srcdir)
-DEFS     = 
-CPPFLAGS =   $(DEFS) $(cppflags)
-CXXFLAGS = $(CCDLFLAGS) $(cxxflags) $(ARCH_FLAG)
-ldflags  = -L. -fstack-protector -rdynamic -Wl,-export-dynamic
-dldflags =  
-ARCH_FLAG = 
-DLDFLAGS = $(ldflags) $(dldflags) $(ARCH_FLAG)
-LDSHARED = $(CC) -shared
-LDSHAREDXX = $(CXX) -shared
-AR = ar
-EXEEXT = 
-
-RUBY_INSTALL_NAME = ruby
-RUBY_SO_NAME = ruby
-RUBYW_INSTALL_NAME = 
-RUBY_VERSION_NAME = $(RUBY_BASE_NAME)-$(ruby_version)
-RUBYW_BASE_NAME = rubyw
-RUBY_BASE_NAME = ruby
-
-arch = x86_64-linux
-sitearch = $(arch)
-ruby_version = 2.1.0
-ruby = $(bindir)/ruby
-RUBY = $(ruby)
-ruby_headers = $(hdrdir)/ruby.h $(hdrdir)/ruby/ruby.h $(hdrdir)/ruby/defines.h $(hdrdir)/ruby/missing.h $(hdrdir)/ruby/intern.h $(hdrdir)/ruby/st.h $(hdrdir)/ruby/subst.h $(arch_hdrdir)/ruby/config.h
-
-RM = rm -f
-RM_RF = $(RUBY) -run -e rm -- -rf
-RMDIRS = rmdir --ignore-fail-on-non-empty -p
-MAKEDIRS = /bin/mkdir -p
-INSTALL = /usr/bin/install -c
-INSTALL_PROG = $(INSTALL) -m 0755
-INSTALL_DATA = $(INSTALL) -m 644
-COPY = cp
-TOUCH = exit >
-
-#### End of system configuration section. ####
-
-preload = 
-
-libpath = . $(libdir)
-LIBPATH =  -L. -L$(libdir) -Wl,-R$(libdir)
-DEFFILE = 
-
-CLEANFILES = mkmf.log
-DISTCLEANFILES = 
-DISTCLEANDIRS = 
-
-extout = 
-extout_prefix = 
-target_prefix = 
-LOCAL_LIBS = 
-LIBS = $(LIBRUBYARG_SHARED)  -lpthread -ldl -lcrypt -lm   -lc
-ORIG_SRCS = sstat.c
-SRCS = $(ORIG_SRCS) 
-OBJS = sstat.o
-HDRS = $(srcdir)/sstat.h
-TARGET = sstat
-TARGET_NAME = sstat
-TARGET_ENTRY = Init_$(TARGET_NAME)
-DLLIB = $(TARGET).so
-EXTSTATIC = 
-STATIC_LIB = 
-
-TIMESTAMP_DIR = .
-BINDIR        = $(bindir)
-RUBYCOMMONDIR = $(sitedir)$(target_prefix)
-RUBYLIBDIR    = $(sitelibdir)$(target_prefix)
-RUBYARCHDIR   = $(sitearchdir)$(target_prefix)
-HDRDIR        = $(rubyhdrdir)/ruby$(target_prefix)
-ARCHHDRDIR    = $(rubyhdrdir)/$(arch)/ruby$(target_prefix)
-
-TARGET_SO     = $(DLLIB)
-CLEANLIBS     = $(TARGET).so 
-CLEANOBJS     = *.o  *.bak
-
-all:    $(DLLIB)
-static: $(STATIC_LIB)
-.PHONY: all install static install-so install-rb
-.PHONY: clean clean-so clean-static clean-rb
-
-clean-static::
-clean-rb-default::
-clean-rb::
-clean-so::
-clean: clean-so clean-static clean-rb-default clean-rb
-		-$(Q)$(RM) $(CLEANLIBS) $(CLEANOBJS) $(CLEANFILES) .*.time
-
-distclean-rb-default::
-distclean-rb::
-distclean-so::
-distclean-static::
-distclean: clean distclean-so distclean-static distclean-rb-default distclean-rb
-		-$(Q)$(RM) Makefile $(RUBY_EXTCONF_H) conftest.* mkmf.log
-		-$(Q)$(RM) core ruby$(EXEEXT) *~ $(DISTCLEANFILES)
-		-$(Q)$(RMDIRS) $(DISTCLEANDIRS) 2> /dev/null || true
-
-realclean: distclean
-install: install-so install-rb
-
-install-so: $(DLLIB) $(TIMESTAMP_DIR)/.RUBYARCHDIR.time
-	$(INSTALL_PROG) $(DLLIB) $(RUBYARCHDIR)
-clean-static::
-	-$(Q)$(RM) $(STATIC_LIB)
-install-rb: pre-install-rb install-rb-default
-install-rb-default: pre-install-rb-default
-pre-install-rb: Makefile
-pre-install-rb-default: Makefile
-pre-install-rb-default:
-	$(ECHO) installing default sstat libraries
-$(TIMESTAMP_DIR)/.RUBYARCHDIR.time:
-	$(Q) $(MAKEDIRS) $(@D) $(RUBYARCHDIR)
-	$(Q) $(TOUCH) $@
-
-site-install: site-install-so site-install-rb
-site-install-so: install-so
-site-install-rb: install-rb
-
-.SUFFIXES: .c .m .cc .mm .cxx .cpp .C .o
-
-.cc.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<
-
-.mm.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<
-
-.cxx.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<
-
-.cpp.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<
-
-.C.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<
-
-.c.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CC) $(INCFLAGS) $(CPPFLAGS) $(CFLAGS) $(COUTFLAG)$@ -c $<
-
-.m.o:
-	$(ECHO) compiling $(<)
-	$(Q) $(CC) $(INCFLAGS) $(CPPFLAGS) $(CFLAGS) $(COUTFLAG)$@ -c $<
-
-$(DLLIB): $(OBJS) Makefile
-	$(ECHO) linking shared-object $(DLLIB)
-	-$(Q)$(RM) $(@)
-	$(Q) $(LDSHARED) -o $@ $(OBJS) $(LIBPATH) $(DLDFLAGS) $(LOCAL_LIBS) $(LIBS)
-
-
-
-$(OBJS): $(HDRS) $(ruby_headers)