sqed 0.3.2 → 0.4.0
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- checksums.yaml +4 -4
- data/.ruby-version +1 -1
- data/Guardfile +66 -0
- data/lib/sqed.rb +120 -68
- data/lib/sqed/boundaries.rb +30 -25
- data/lib/sqed/boundary_finder.rb +221 -212
- data/lib/sqed/boundary_finder/color_line_finder.rb +50 -42
- data/lib/sqed/boundary_finder/cross_finder.rb +3 -3
- data/lib/sqed/boundary_finder/stage_finder.rb +8 -3
- data/lib/sqed/extractor.rb +23 -25
- data/lib/sqed/parser.rb +4 -7
- data/lib/sqed/parser/barcode_parser.rb +5 -5
- data/lib/sqed/parser/ocr_parser.rb +46 -46
- data/lib/sqed/result.rb +60 -57
- data/lib/sqed/version.rb +1 -1
- data/lib/sqed_config.rb +52 -56
- data/spec/lib/sqed/boundaries_spec.rb +1 -1
- data/spec/lib/sqed/boundary_finder/color_line_finder_spec.rb +24 -24
- data/spec/lib/sqed/boundary_finder/cross_finder_spec.rb +1 -1
- data/spec/lib/sqed/boundary_finder/stage_finder_spec.rb +1 -1
- data/spec/lib/sqed/boundary_finder_spec.rb +73 -45
- data/spec/lib/sqed/extractor_spec.rb +4 -4
- data/spec/lib/sqed/parser/ocr_spec.rb +2 -2
- data/spec/lib/sqed_spec.rb +39 -39
- data/spec/lib/stage_handling/seven_slot_spec.rb +45 -9
- data/spec/support/files/stage_images/inhs_7_slot2.jpg +0 -0
- data/spec/support/image_helpers.rb +10 -9
- metadata +6 -3
@@ -3,25 +3,61 @@ require 'spec_helper'
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describe 'handling 7 slot stages' do
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let(:image) { ImageHelpers.inhs_stage_7_slot }
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let(:sqed)
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let(:sqed) do
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Sqed.new(
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image: image,
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pattern: :seven_slot,
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boundary_color: :red,
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has_border: false )
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end
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let(:m) do
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{ 0 => 'collecting_event_labels',
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1 => 'determination_labels',
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2 => 'other_labels',
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3 => 'image_registration',
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4 => 'curator_metadata',
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5 => 'identifier',
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6 => 'specimen' }
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end
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context 'parses' do
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specify 'new() without errors' do
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expect(
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expect(sqed).to be_truthy
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end
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specify 'get result without errors' do
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expect(
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expect(sqed.result).to be_truthy
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end
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end
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context 'without
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let(:
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let(:s) { Sqed.new(target_image: image, metadata_map: m, target_layout: :seven_slot, boundary_color: :red, has_border: false ) }
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context 'trickier boundaries - without thumbnail' do
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let(:s) { Sqed.new(image: ImageHelpers.inhs_stage_7_slot2, metadata_map: m, use_thumbnail: false, layout: :seven_slot, boundary_color: :red, has_border: false ) }
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specify '
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-
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specify 'boundaries are reasonable' do
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s.result
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c = s.boundaries.coordinates
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c.each do |section, values|
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c[section].each_with_index do |v, i|
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msg = "section #{section}, index #{i} has a bad value '#{v}'"
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expect(v > -1).to be_truthy, msg
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end
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end
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end
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end
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-
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context 'trickier boundaries - with_thumbnail' do
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let(:s) { Sqed.new(image: ImageHelpers.inhs_stage_7_slot2, use_thumbnail: true, pattern: :seven_slot, boundary_color: :red, has_border: false ) }
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specify 'boundaries are reasonable' do
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s.result
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c = s.boundaries.coordinates
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c.each do |section, values|
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c[section].each_with_index do |v, i|
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msg = "section #{section}, index #{i} has a bad value '#{v}'"
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expect(v > -1).to be_truthy, msg
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end
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end
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end
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end
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end
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Binary file
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@@ -1,6 +1,6 @@
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module ImageHelpers
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BASE_PATH = '../files/'
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BASE_PATH = '../files/'.freeze
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class << self
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@@ -35,6 +35,10 @@ module ImageHelpers
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get_image 'stage_images/inhs_7_slot.jpg'
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end
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def inhs_stage_7_slot2
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get_image 'stage_images/inhs_7_slot2.jpg'
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end
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def crossy_green_line_specimen
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get_image 'stage_images/CrossyGreenLinesSpecimen.jpg'
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end
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@@ -84,16 +88,16 @@ module ImageHelpers
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get_image 'label_iamges/label_images/black_stage_green_line_specimen_label.jpg'
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end
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def readme_text
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get_image 'label_images/readme.png'
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def readme_text
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get_image 'label_images/readme.png'
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end
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def basic_text_image1
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get_image 'label_images/basic1.png'
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get_image 'label_images/basic1.png'
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end
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def basic_text_image2
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get_image 'label_images/basic2.png'
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get_image 'label_images/basic2.png'
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end
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# Real life, black border, no internal boundaries
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@@ -111,8 +115,5 @@ module ImageHelpers
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def slide_scan_image
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get_image 'misc_images/types_8.jpg'
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end
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end
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end
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end
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metadata
CHANGED
@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: sqed
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version: !ruby/object:Gem::Version
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version: 0.
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version: 0.4.0
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platform: ruby
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authors:
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- Matt Yoder
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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date: 2018-03-21 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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@@ -122,6 +122,7 @@ files:
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- ".ruby-version"
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- ".travis.yml"
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- Gemfile
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- Guardfile
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- LICENSE.txt
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- README.md
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- Rakefile
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@@ -172,6 +173,7 @@ files:
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- spec/support/files/stage_images/frost_stage_thumb.jpg
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- spec/support/files/stage_images/greenlineimage.jpg
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- spec/support/files/stage_images/inhs_7_slot.jpg
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- spec/support/files/stage_images/inhs_7_slot2.jpg
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- spec/support/files/stage_images/inhs_four_thirds.jpg
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- spec/support/files/test0.jpg
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- spec/support/files/test1.jpg
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@@ -201,7 +203,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.6.
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rubygems_version: 2.6.14
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signing_key:
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specification_version: 4
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summary: Specimens Quickly Extracted and Digitized, or just "squid". A ruby gem for
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@@ -241,6 +243,7 @@ test_files:
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- spec/support/files/stage_images/frost_stage_thumb.jpg
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- spec/support/files/stage_images/greenlineimage.jpg
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- spec/support/files/stage_images/inhs_7_slot.jpg
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- spec/support/files/stage_images/inhs_7_slot2.jpg
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- spec/support/files/stage_images/inhs_four_thirds.jpg
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- spec/support/files/test0.jpg
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- spec/support/files/test1.jpg
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