spout 0.12.0.beta1 → 0.12.0.beta2
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- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -2
- data/lib/spout/commands/exporter.rb +24 -14
- data/lib/spout/commands/importer.rb +7 -11
- data/lib/spout/commands/project_generator.rb +2 -5
- data/lib/spout/helpers/subject_loader.rb +1 -1
- data/lib/spout/models/graphables/numeric_vs_choices.rb +2 -6
- data/lib/spout/models/variable.rb +2 -3
- data/lib/spout/templates/ruby-version +1 -1
- data/lib/spout/templates/travis.yml +1 -1
- data/lib/spout/version.rb +1 -1
- data/spout.gemspec +6 -1
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: b8d706e8d746c0ae4c64014bbcf38f47d51e388a
|
4
|
+
data.tar.gz: b2a49b2f165531f6a96ad677cb6a1d9f4045a283
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 9b4fa147fc6914b594afd25acc72f5de98c929dbc2631489fd8267c1a3ff3e432a16292a28ce2f5565d011879263a3cfa265b004c1af9deebcf6525d6fa5411d
|
7
|
+
data.tar.gz: 9f3dfd7ee30b971b2d3152c486dac7bb87b9d3811a6d7fd30267bfdf9285ec4330cfece6956e217dffb64827fa7f902f9f43aec3aed4fd4ea25622b670965017
|
data/CHANGELOG.md
CHANGED
@@ -3,11 +3,19 @@
|
|
3
3
|
### Enhancements
|
4
4
|
- **General Changes**
|
5
5
|
- Spout now provides a warning and skips columns in CSVs with blank headers
|
6
|
+
- **Exporter Changes**
|
7
|
+
- The export command now exports the variable forms attribute
|
8
|
+
- **Importer Changes**
|
9
|
+
- The import command now reads in the `commonly_used` column
|
10
|
+
- The import command now imports the variable forms attribute
|
6
11
|
- **Gem Changes**
|
7
|
-
- Updated to Ruby 2.4.
|
12
|
+
- Updated to Ruby 2.4.1
|
8
13
|
- Updated to bundler 1.13
|
9
14
|
- Updated to colorize 0.8.1
|
10
|
-
- Updated to simplecov 0.
|
15
|
+
- Updated to simplecov 0.14.1
|
16
|
+
|
17
|
+
### Refactoring
|
18
|
+
- General code cleanup based on Rubocop recommendations
|
11
19
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|
12
20
|
## 0.11.1 (February 4, 2016)
|
13
21
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|
@@ -9,9 +9,10 @@ require 'spout/helpers/config_reader'
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|
9
9
|
|
10
10
|
module Spout
|
11
11
|
module Commands
|
12
|
+
# Exports the JSON data dictionary to a CSV format.
|
12
13
|
class Exporter
|
13
14
|
def initialize(standard_version, argv)
|
14
|
-
@quiet =
|
15
|
+
@quiet = !argv.delete('--quiet').nil?
|
15
16
|
@standard_version = standard_version
|
16
17
|
@config = Spout::Helpers::ConfigReader.new
|
17
18
|
expanded_export!
|
@@ -21,33 +22,42 @@ module Spout
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|
21
22
|
|
22
23
|
def expanded_export!
|
23
24
|
folder = "dd/#{@standard_version}"
|
24
|
-
puts
|
25
|
+
puts ' create'.colorize(:green) + " #{folder}" unless @quiet
|
25
26
|
FileUtils.mkpath folder
|
26
|
-
|
27
|
-
|
27
|
+
generic_export(
|
28
|
+
folder,
|
29
|
+
'variables',
|
30
|
+
%w(
|
31
|
+
id display_name description type units domain labels calculation
|
32
|
+
commonly_used forms
|
33
|
+
)
|
34
|
+
)
|
28
35
|
generic_export(folder, 'domains', %w(value display_name description), true)
|
29
36
|
generic_export(folder, 'forms', %w(id display_name code_book))
|
30
37
|
end
|
31
38
|
|
32
39
|
def generic_export(folder, type, keys, include_domain_name = false)
|
33
40
|
export_file = export_file_name(type)
|
34
|
-
puts
|
35
|
-
CSV.open("#{folder}/#{export_file}",
|
36
|
-
if include_domain_name
|
37
|
-
|
38
|
-
|
39
|
-
|
40
|
-
|
41
|
+
puts ' export'.colorize(:blue) + " #{folder}/#{export_file}" unless @quiet
|
42
|
+
CSV.open("#{folder}/#{export_file}", 'wb') do |csv|
|
43
|
+
csv << if include_domain_name
|
44
|
+
%w(folder domain_id) + keys
|
45
|
+
else
|
46
|
+
%w(folder) + keys
|
47
|
+
end
|
41
48
|
Dir.glob("#{type}/**/*.json").sort.each do |file|
|
42
|
-
|
49
|
+
json = JSON.parse(File.read(file)) rescue false
|
50
|
+
if json
|
43
51
|
relative_folder = generic_folder_path(file, type)
|
44
52
|
if include_domain_name
|
45
53
|
domain_name = extract_domain_name(file)
|
46
54
|
json.each do |hash|
|
47
|
-
csv << [relative_folder, domain_name] + keys.collect{|key| hash[key]}
|
55
|
+
csv << [relative_folder, domain_name] + keys.collect { |key| hash[key] }
|
48
56
|
end
|
49
57
|
else
|
50
|
-
csv << [relative_folder] + keys.collect
|
58
|
+
csv << [relative_folder] + keys.collect do |key|
|
59
|
+
json[key].is_a?(Array) ? json[key].join(';') : json[key].to_s
|
60
|
+
end
|
51
61
|
end
|
52
62
|
end
|
53
63
|
end
|
@@ -9,21 +9,17 @@ module Spout
|
|
9
9
|
module Commands
|
10
10
|
class Importer
|
11
11
|
def initialize(argv)
|
12
|
-
use_domains =
|
13
|
-
|
12
|
+
use_domains = !argv.delete('--domains').nil?
|
14
13
|
@csv_file = argv[1].to_s
|
15
|
-
|
16
14
|
unless File.exist?(@csv_file)
|
17
15
|
puts csv_usage
|
18
16
|
return self
|
19
17
|
end
|
20
|
-
|
21
18
|
if use_domains
|
22
19
|
import_domains
|
23
20
|
else
|
24
21
|
import_variables
|
25
22
|
end
|
26
|
-
|
27
23
|
end
|
28
24
|
|
29
25
|
def csv_usage
|
@@ -38,7 +34,7 @@ EOT
|
|
38
34
|
end
|
39
35
|
|
40
36
|
def import_variables
|
41
|
-
CSV.parse(
|
37
|
+
CSV.parse(File.open(@csv_file, 'r:iso-8859-1:utf-8', &:read), headers: true) do |line|
|
42
38
|
row = line.to_hash
|
43
39
|
if not row.keys.include?('id')
|
44
40
|
puts "\nMissing column header `".colorize( :red ) + "id".colorize( :light_cyan ) + "` in data dictionary.".colorize( :red ) + additional_csv_info
|
@@ -60,7 +56,10 @@ EOT
|
|
60
56
|
calculation = row.delete('calculation').to_s
|
61
57
|
hash['calculation'] = calculation if calculation != ''
|
62
58
|
labels = row.delete('labels').to_s.split(';')
|
63
|
-
hash['labels'] = labels
|
59
|
+
hash['labels'] = labels unless labels.empty?
|
60
|
+
hash['commonly_used'] = true if row.delete('commonly_used').to_s.casecmp('true').zero?
|
61
|
+
forms = row.delete('forms').to_s.split(';')
|
62
|
+
hash['forms'] = forms unless forms.empty?
|
64
63
|
hash['other'] = row unless row.empty?
|
65
64
|
|
66
65
|
file_name = File.join(folder, id + '.json')
|
@@ -74,7 +73,7 @@ EOT
|
|
74
73
|
def import_domains
|
75
74
|
domains = {}
|
76
75
|
|
77
|
-
CSV.parse(
|
76
|
+
CSV.parse(File.open(@csv_file, 'r:iso-8859-1:utf-8', &:read), headers: true) do |line|
|
78
77
|
row = line.to_hash
|
79
78
|
if not row.keys.include?('domain_id')
|
80
79
|
puts "\nMissing column header `".colorize( :red ) + "domain_id".colorize( :light_cyan ) + "` in data dictionary.".colorize( :red ) + additional_csv_info
|
@@ -116,7 +115,6 @@ EOT
|
|
116
115
|
end
|
117
116
|
puts " create".colorize( :green ) + " #{file_name}"
|
118
117
|
end
|
119
|
-
|
120
118
|
end
|
121
119
|
|
122
120
|
# Converts ALL-CAPS display names to title case
|
@@ -135,8 +133,6 @@ EOT
|
|
135
133
|
def additional_csv_info
|
136
134
|
"\n\nFor additional information on specifying CSV column headers before import see:\n\n " + "https://github.com/sleepepi/spout#generate-a-new-repository-from-an-existing-csv-file".colorize( :light_cyan ) + "\n\n"
|
137
135
|
end
|
138
|
-
|
139
|
-
|
140
136
|
end
|
141
137
|
end
|
142
138
|
end
|
@@ -13,7 +13,7 @@ module Spout
|
|
13
13
|
end
|
14
14
|
|
15
15
|
def generate_folder_structure!(argv)
|
16
|
-
skip_gemfile =
|
16
|
+
skip_gemfile = !argv.delete('--skip-gemfile').nil?
|
17
17
|
@full_path = File.join(argv[1].to_s.strip)
|
18
18
|
usage = <<-EOT
|
19
19
|
|
@@ -22,14 +22,11 @@ Usage: spout new FOLDER
|
|
22
22
|
The FOLDER must be empty or new.
|
23
23
|
|
24
24
|
EOT
|
25
|
-
|
26
|
-
if @full_path == '' or ( Dir.exists?(@full_path) and (Dir.entries(@full_path) & ['.gitignore', '.ruby-version', '.travis.yml', 'Gemfile', 'Rakefile', 'domains', 'variables', 'test']).size > 0 )
|
25
|
+
if @full_path == '' || (Dir.exist?(@full_path) && (Dir.entries(@full_path) & ['.gitignore', '.ruby-version', '.travis.yml', 'Gemfile', 'Rakefile', 'domains', 'variables', 'test']).size > 0)
|
27
26
|
puts usage
|
28
27
|
exit(0)
|
29
28
|
end
|
30
|
-
|
31
29
|
FileUtils.mkpath(@full_path)
|
32
|
-
|
33
30
|
copy_file 'gitignore', '.gitignore'
|
34
31
|
copy_file 'ruby-version', '.ruby-version'
|
35
32
|
copy_file 'travis.yml', '.travis.yml'
|
@@ -59,7 +59,7 @@ module Spout
|
|
59
59
|
puts " #{current_folder}".colorize(:white) if current_folder.to_s != '' && current_folder != last_folder
|
60
60
|
print " #{current_file}"
|
61
61
|
last_folder = current_folder
|
62
|
-
CSV.parse(File.open(csv_file, 'r:iso-8859-1:utf-8'
|
62
|
+
CSV.parse(File.open(csv_file, 'r:iso-8859-1:utf-8', &:read), headers: true, header_converters: lambda { |h| h.to_s.downcase }) do |line|
|
63
63
|
row = line.to_hash
|
64
64
|
count += 1
|
65
65
|
print "\r #{current_file} " + "##{count}".colorize(:yellow) if (count % 10 == 0)
|
@@ -6,7 +6,6 @@ module Spout
|
|
6
6
|
module Models
|
7
7
|
module Graphables
|
8
8
|
class NumericVsChoices < Spout::Models::Graphables::Default
|
9
|
-
|
10
9
|
def categories
|
11
10
|
categories_result = []
|
12
11
|
@stratification_variable.domain.options.each do |option|
|
@@ -28,13 +27,11 @@ module Spout
|
|
28
27
|
@stratification_variable.domain.options.each do |option|
|
29
28
|
visit_subjects = @subjects.select{ |s| s._visit == option.value and s.send(@variable.id) != nil } rescue visit_subjects = []
|
30
29
|
if visit_subjects.count > 0
|
31
|
-
|
32
|
-
|
33
|
-
values = visit_subjects.select{|s| s.send(@chart_variable.id) == option.value }.collect(&@variable.id.to_sym)
|
30
|
+
filtered_domain_options(@chart_variable).each_with_index do |filtered_option, index|
|
31
|
+
values = visit_subjects.select{|s| s.send(@chart_variable.id) == filtered_option.value }.collect(&@variable.id.to_sym)
|
34
32
|
data[index] ||= []
|
35
33
|
data[index] << (values.mean.round(2) rescue 0.0)
|
36
34
|
end
|
37
|
-
|
38
35
|
end
|
39
36
|
end
|
40
37
|
|
@@ -42,7 +39,6 @@ module Spout
|
|
42
39
|
{ name: option.display_name, data: data[index] }
|
43
40
|
end
|
44
41
|
end
|
45
|
-
|
46
42
|
end
|
47
43
|
end
|
48
44
|
end
|
@@ -23,6 +23,7 @@ module Spout
|
|
23
23
|
@id = file_name.to_s.gsub(%r{^(.*)/|\.json$}, '').downcase
|
24
24
|
@folder = file_name.to_s.gsub(%r{^#{dictionary_root}/variables/|#{@id}\.json$}, '')
|
25
25
|
@form_names = []
|
26
|
+
@domain_name = nil
|
26
27
|
|
27
28
|
json = begin
|
28
29
|
JSON.parse(File.read(file_name))
|
@@ -31,7 +32,7 @@ module Spout
|
|
31
32
|
nil
|
32
33
|
end
|
33
34
|
|
34
|
-
if json.is_a?
|
35
|
+
if json.is_a?(Hash)
|
35
36
|
%w(display_name description type units commonly_used calculation).each do |method|
|
36
37
|
instance_variable_set("@#{method}", json[method])
|
37
38
|
end
|
@@ -45,9 +46,7 @@ module Spout
|
|
45
46
|
elsif json
|
46
47
|
@errors << "Variable must be a valid hash in the following format: {\n\"id\": \"VARIABLE_ID\",\n \"display_name\": \"VARIABLE DISPLAY NAME\",\n \"description\": \"VARIABLE DESCRIPTION\"\n}"
|
47
48
|
end
|
48
|
-
|
49
49
|
@errors = (@errors + [error]).compact
|
50
|
-
|
51
50
|
@domain = Spout::Models::Domain.find_by_id(@domain_name)
|
52
51
|
@forms = @form_names.collect { |form_name| Spout::Models::Form.find_by_id(form_name) }.compact
|
53
52
|
end
|
@@ -1 +1 @@
|
|
1
|
-
ruby-2.4.
|
1
|
+
ruby-2.4.1
|
data/lib/spout/version.rb
CHANGED
data/spout.gemspec
CHANGED
@@ -18,7 +18,12 @@ Gem::Specification.new do |spec|
|
|
18
18
|
spec.authors = ['Remo Mueller']
|
19
19
|
spec.email = ['remosm@gmail.com']
|
20
20
|
spec.description = 'Manage your data dictionary as a JSON repository, and easily export back to CSV.'
|
21
|
-
spec.summary = 'Turn your CSV data dictionary into a JSON repository.
|
21
|
+
spec.summary = 'Turn your CSV data dictionary into a JSON repository. '\
|
22
|
+
'Collaborate with others to update the data dictionary '\
|
23
|
+
'in JSON format. Generate new Data Dictionary from the '\
|
24
|
+
'JSON repository. Test and validate your data '\
|
25
|
+
'dictionary using built-in tests, or add your own for '\
|
26
|
+
'further validations.'
|
22
27
|
spec.homepage = 'https://github.com/sleepepi/spout'
|
23
28
|
spec.license = 'MIT'
|
24
29
|
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: spout
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.12.0.
|
4
|
+
version: 0.12.0.beta2
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Remo Mueller
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2017-
|
11
|
+
date: 2017-03-24 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: bundler
|
@@ -206,7 +206,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
206
206
|
version: 1.3.1
|
207
207
|
requirements: []
|
208
208
|
rubyforge_project:
|
209
|
-
rubygems_version: 2.6.
|
209
|
+
rubygems_version: 2.6.11
|
210
210
|
signing_key:
|
211
211
|
specification_version: 4
|
212
212
|
summary: Turn your CSV data dictionary into a JSON repository. Collaborate with others
|