specify_cli 0.0.5
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- checksums.yaml +7 -0
- data/.gitignore +4 -0
- data/.rspec +1 -0
- data/Gemfile +17 -0
- data/Gemfile.lock +117 -0
- data/LICENSE.txt +21 -0
- data/README.rdoc +43 -0
- data/Rakefile +15 -0
- data/bin/specify_cli +248 -0
- data/lib/specify.rb +45 -0
- data/lib/specify/branch_parser.rb +85 -0
- data/lib/specify/cli.rb +11 -0
- data/lib/specify/cli/database_setup.rb +46 -0
- data/lib/specify/cli/stubs.rb +63 -0
- data/lib/specify/cli/viewset.rb +21 -0
- data/lib/specify/configuration.rb +12 -0
- data/lib/specify/configuration/config.rb +120 -0
- data/lib/specify/configuration/db_config.rb +162 -0
- data/lib/specify/configuration/host_config.rb +37 -0
- data/lib/specify/database.rb +140 -0
- data/lib/specify/models.rb +43 -0
- data/lib/specify/models/accession.rb +33 -0
- data/lib/specify/models/agent.rb +138 -0
- data/lib/specify/models/app_resource_data.rb +32 -0
- data/lib/specify/models/app_resource_dir.rb +43 -0
- data/lib/specify/models/auto_numbering_scheme.rb +94 -0
- data/lib/specify/models/collecting_event.rb +38 -0
- data/lib/specify/models/collection.rb +67 -0
- data/lib/specify/models/collection_object.rb +127 -0
- data/lib/specify/models/createable.rb +21 -0
- data/lib/specify/models/determination.rb +63 -0
- data/lib/specify/models/discipline.rb +61 -0
- data/lib/specify/models/division.rb +26 -0
- data/lib/specify/models/geography.rb +5 -0
- data/lib/specify/models/geography/administrative_division.rb +32 -0
- data/lib/specify/models/geography/geographic_name.rb +66 -0
- data/lib/specify/models/geography/geography.rb +23 -0
- data/lib/specify/models/institution.rb +13 -0
- data/lib/specify/models/locality.rb +50 -0
- data/lib/specify/models/preparation.rb +53 -0
- data/lib/specify/models/preparation_type.rb +30 -0
- data/lib/specify/models/record_set.rb +55 -0
- data/lib/specify/models/record_set_item.rb +29 -0
- data/lib/specify/models/taxonomy.rb +6 -0
- data/lib/specify/models/taxonomy/common_name.rb +14 -0
- data/lib/specify/models/taxonomy/rank.rb +31 -0
- data/lib/specify/models/taxonomy/taxon.rb +54 -0
- data/lib/specify/models/taxonomy/taxonomy.rb +21 -0
- data/lib/specify/models/tree_queryable.rb +55 -0
- data/lib/specify/models/updateable.rb +20 -0
- data/lib/specify/models/user.rb +104 -0
- data/lib/specify/models/view_set_object.rb +32 -0
- data/lib/specify/number_format.rb +60 -0
- data/lib/specify/services.rb +18 -0
- data/lib/specify/services/service.rb +51 -0
- data/lib/specify/services/stub_generator.rb +291 -0
- data/lib/specify/services/view_loader.rb +177 -0
- data/lib/specify/session.rb +77 -0
- data/lib/specify/user_type.rb +61 -0
- data/lib/specify/version.rb +19 -0
- data/man/specify_cli-database.1 +60 -0
- data/man/specify_cli-database.1.html +137 -0
- data/man/specify_cli-database.1.ronn +53 -0
- data/man/specify_cli-repository.1 +55 -0
- data/man/specify_cli-repository.1.html +128 -0
- data/man/specify_cli-repository.1.ronn +42 -0
- data/man/specify_cli-stubs.1 +177 -0
- data/man/specify_cli-stubs.1.html +239 -0
- data/man/specify_cli-stubs.1.ronn +147 -0
- data/man/specify_cli-viewset.1 +92 -0
- data/man/specify_cli-viewset.1.html +154 -0
- data/man/specify_cli-viewset.1.ronn +72 -0
- data/man/specify_cli.1 +213 -0
- data/man/specify_cli.1.html +252 -0
- data/man/specify_cli.1.ronn +157 -0
- data/spec/branch_parser_spec.rb +94 -0
- data/spec/cli/stubs_spec.rb +44 -0
- data/spec/configuration/config_spec.rb +269 -0
- data/spec/configuration/db_config_spec.rb +299 -0
- data/spec/configuration/host_config_spec.rb +64 -0
- data/spec/database_spec.rb +83 -0
- data/spec/examples.txt +217 -0
- data/spec/helpers.rb +15 -0
- data/spec/models/app_resource_data_spec.rb +38 -0
- data/spec/models/app_resource_dir_spec.rb +8 -0
- data/spec/models/auto_numbering_scheme_spec.rb +78 -0
- data/spec/models/collection_object_spec.rb +92 -0
- data/spec/models/collection_spec.rb +32 -0
- data/spec/models/discipline_spec.rb +31 -0
- data/spec/models/record_set_spec.rb +18 -0
- data/spec/models/user_spec.rb +182 -0
- data/spec/models/view_set_object_spec.rb +70 -0
- data/spec/number_format_spec.rb +43 -0
- data/spec/services/stub_generator_spec.rb +635 -0
- data/spec/services/view_loader_spec.rb +436 -0
- data/spec/session_spec.rb +105 -0
- data/spec/spec_helper.rb +116 -0
- data/spec/support/db.yml +12 -0
- data/spec/support/stub.yaml +17 -0
- data/spec/support/stub_locality.yaml +19 -0
- data/spec/support/viewsets/paleo.views.xml +30 -0
- data/spec/support/viewsets/paleo.xml +30 -0
- data/spec/user_type_spec.rb +79 -0
- data/specify_cli.gemspec +27 -0
- data/specify_cli.rdoc +1 -0
- metadata +246 -0
@@ -0,0 +1,436 @@
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# frozen_string_literal: true
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# Tests for the
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module Specify
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module Service
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RSpec.describe ViewLoader do
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let :config do
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Pathname.new(Dir.pwd).join('spec', 'support', 'db.yml')
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end
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let(:path) { 'sp_resource' }
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describe '.from_branch(name, config)' do
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context 'when branch is discipline level' do
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subject do
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bname = 'SPSPEC/TestCollection/discipline'
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described_class.from_branch(path: path,
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name: bname,
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config: config).target
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end
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it do
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is_expected
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.to be_a(Model::Discipline)
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.and have_attributes Name: 'Test Discipline'
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end
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end
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context 'when branch is collection level' do
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subject do
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bname = 'SPSPEC/TestCollection/collection'
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described_class.from_branch(path: path,
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name: bname,
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config: config).target
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end
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it do
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is_expected
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.to be_a(Model::Collection)
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.and have_attributes CollectionName: 'Test Collection'
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end
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end
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context 'when branch is user type level' do
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subject do
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bname = 'SPSPEC/TestCollection/Manager'
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described_class.from_branch(path: path,
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name: bname,
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config: config).target
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end
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it do
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is_expected
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.to be_a(UserType)
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.and have_attributes name: :manager
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end
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end
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context 'when branch is user level' do
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subject do
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bname = 'SPSPEC/TestCollection/user/specuser'
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described_class.from_branch(path: path,
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name: bname,
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config: config).target
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end
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it do
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is_expected
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.to be_a(Model::User)
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.and have_attributes EMail: 'john.doe@example.com',
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Name: 'specuser'
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end
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end
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end
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describe '.user_target(hash)' do
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subject { described_class.user_target(user: 'specuser') }
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it do
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is_expected.to be_a(Model::User)
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.and have_attributes Name: 'specuser'
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end
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end
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describe '.user_type_target(hash)' do
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subject { described_class.user_type_target(user_type: 'manager') }
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it do
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is_expected.to be_a(UserType)
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.and have_attributes name: 'manager'
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end
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end
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describe '#target=(level)' do
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let :view_loader do
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described_class.new host: 'localhost',
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database: 'SPSPEC',
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collection: 'Test Collection',
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config: config
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end
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context 'when level is :discipline' do
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it do
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expect { view_loader.target = :discipline }
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.to change(view_loader, :target)
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.from(be_nil)
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.to a_kind_of(Model::Discipline)
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.and have_attributes Name: 'Test Discipline'
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end
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end
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context 'when level is :collection' do
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it do
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expect { view_loader.target = :collection }
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.to change(view_loader, :target)
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.from(be_nil)
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.to a_kind_of(Model::Collection)
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.and have_attributes CollectionName: 'Test Collection'
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end
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end
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context 'when level is { user_type: :manager }' do
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it do
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expect { view_loader.target = { user_type: 'manager' } }
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.to change(view_loader, :target)
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.from(be_nil)
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.to a_kind_of(UserType)
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.and have_attributes name: 'manager'
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end
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end
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context 'when level is { user: \'specuser\' }' do
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it do
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expect { view_loader.target = { user: 'specuser' } }
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.to change(view_loader, :target)
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.from(be_nil)
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.to a_kind_of(Model::User)
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.and have_attributes EMail: 'john.doe@example.com',
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Name: 'specuser'
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end
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end
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context 'when level is nil' do
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it do
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expect { view_loader.target = nil }
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.not_to change(view_loader, :target)
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end
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end
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end
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describe '#import(file)' do
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let :file do
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Pathname.new(Dir.pwd).join('spec', 'support',
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'viewsets', 'paleo.views.xml')
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end
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context 'when the app_resource_dir exists' do
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let :view_loader do
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described_class.new host: 'localhost',
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database: 'SPSPEC',
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collection: 'Test Collection',
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level: :collection,
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config: config
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end
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context 'when file is not a .views.xml file' do
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let :wrong_file do
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Pathname.new(Dir.pwd).join('spec', 'support',
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'viewsets', 'paleo.xml')
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end
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it do
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expect { view_loader.import(wrong_file) }
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.to raise_error ArgumentError, FileError::VIEWS_FILE
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end
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end
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context 'when file does not exist' do
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it do
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expect { view_loader.import('no_file.xml') }
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.to raise_error ArgumentError, FileError::NO_FILE
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end
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end
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context 'when file is a .views.xml file' do
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before do
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datadir = view_loader.target.view_set.app_resource_data
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datadir.data = nil
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datadir.save
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end
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it do
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expect { view_loader.import(file) }
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.to change { view_loader.target.view_set.app_resource_data.data }
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.from(nil).to(Sequel.blob(File.read(file)))
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end
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end
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end
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context 'when the app_resource_dir does not exist' do
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let :view_loader do
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described_class.new host: 'localhost',
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database: 'SPSPEC',
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collection: 'Another Collection',
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config: config
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end
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context 'when uploading to the collection' do
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before { view_loader.target = :collection }
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it do
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expect { view_loader.import(file) }
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.to change { view_loader.target.view_set }
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.from(nil).to(an_instance_of(Model::ViewSetObject))
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.and change { view_loader.target.view_set&.app_resource_data&.data }
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.from(nil).to(Sequel.blob(File.read(file)))
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end
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end
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context 'when uploading to the user type' do
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before { view_loader.target = { user_type: 'manager' } }
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let(:collection) { Model::Collection.first(Code: 'NECE') }
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it do
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expect { view_loader.import(file) }
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.to change { view_loader.target.view_set(collection) }
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.from(nil).to(an_instance_of(Model::ViewSetObject))
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.and change { view_loader.target.view_set(collection)&.app_resource_data&.data }
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.from(nil).to(Sequel.blob(File.read(file)))
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end
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end
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end
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end
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describe '#view_collection' do
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subject { view_loader.view_collection }
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let :view_loader do
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described_class.new host: 'localhost',
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database: 'SPSPEC',
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collection: 'Test Collection',
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config: config
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end
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context 'when level is not discipline' do
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before { view_loader.target = :collection }
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it do
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is_expected.to be view_loader.session.collection
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end
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end
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context 'when level is discipline' do
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before { view_loader.target = :discipline }
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it do
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is_expected.to be_nil
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end
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end
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end
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describe '#view_discipline' do
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subject { view_loader.view_discipline }
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let :view_loader do
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described_class.new host: 'localhost',
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database: 'SPSPEC',
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collection: 'Test Collection',
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config: config
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end
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it do
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is_expected.to be_a(Model::Discipline)
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.and have_attributes Name: 'Test Discipline'
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end
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end
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describe '#personal?' do
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subject { view_loader.personal? }
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let :view_loader do
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described_class.new host: 'localhost',
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database: 'SPSPEC',
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collection: 'Test Collection',
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config: config
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end
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context 'when discipline level' do
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before { view_loader.target = :discipline }
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it { is_expected.to be_falsey }
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end
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context 'when collection level' do
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before { view_loader.target = :collection }
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it { is_expected.to be_falsey }
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end
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context 'when user type level' do
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before { view_loader.target = { user_type: 'manager' } }
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it { is_expected.to be_falsey }
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end
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context 'when user level' do
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before { view_loader.target = { user: 'specguest' } }
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it { is_expected.to be_truthy }
|
311
|
+
end
|
312
|
+
end
|
313
|
+
|
314
|
+
describe '#view_level' do
|
315
|
+
subject { view_loader.view_level }
|
316
|
+
|
317
|
+
let :view_loader do
|
318
|
+
described_class.new host: 'localhost',
|
319
|
+
database: 'SPSPEC',
|
320
|
+
collection: 'Test Collection',
|
321
|
+
config: config
|
322
|
+
end
|
323
|
+
|
324
|
+
context 'when discipline level' do
|
325
|
+
before { view_loader.target = :discipline }
|
326
|
+
|
327
|
+
it { is_expected.to be 0 }
|
328
|
+
end
|
329
|
+
|
330
|
+
context 'when collection level' do
|
331
|
+
before { view_loader.target = :collection }
|
332
|
+
|
333
|
+
it { is_expected.to be 2 }
|
334
|
+
end
|
335
|
+
|
336
|
+
context 'when user type level' do
|
337
|
+
before { view_loader.target = { user_type: 'manager' } }
|
338
|
+
|
339
|
+
it { is_expected.to be 0 }
|
340
|
+
end
|
341
|
+
|
342
|
+
context 'when user level' do
|
343
|
+
before { view_loader.target = { user: 'specuser' } }
|
344
|
+
|
345
|
+
it { is_expected.to be 0 }
|
346
|
+
end
|
347
|
+
end
|
348
|
+
|
349
|
+
describe '#view_type' do
|
350
|
+
subject { view_loader.view_type }
|
351
|
+
|
352
|
+
let :view_loader do
|
353
|
+
described_class.new host: 'localhost',
|
354
|
+
database: 'SPSPEC',
|
355
|
+
collection: 'Test Collection',
|
356
|
+
config: config
|
357
|
+
end
|
358
|
+
|
359
|
+
it { is_expected.to eq 'Test Discipline' }
|
360
|
+
end
|
361
|
+
|
362
|
+
describe '#view_user' do
|
363
|
+
subject { view_loader.view_user }
|
364
|
+
|
365
|
+
let :view_loader do
|
366
|
+
described_class.new host: 'localhost',
|
367
|
+
database: 'SPSPEC',
|
368
|
+
collection: 'Test Collection',
|
369
|
+
config: config
|
370
|
+
end
|
371
|
+
|
372
|
+
context 'when discipline level' do
|
373
|
+
before { view_loader.target = :discipline }
|
374
|
+
|
375
|
+
it { is_expected.to be view_loader.session.user }
|
376
|
+
end
|
377
|
+
|
378
|
+
context 'when collection level' do
|
379
|
+
before { view_loader.target = :collection }
|
380
|
+
|
381
|
+
it { is_expected.to be view_loader.session.user }
|
382
|
+
end
|
383
|
+
|
384
|
+
context 'when user type level' do
|
385
|
+
before { view_loader.target = { user_type: 'manager' } }
|
386
|
+
|
387
|
+
it { is_expected.to be view_loader.session.user }
|
388
|
+
end
|
389
|
+
|
390
|
+
context 'when user level' do
|
391
|
+
before { view_loader.target = { user: 'specguest' } }
|
392
|
+
|
393
|
+
it do
|
394
|
+
is_expected.to be_a(Model::User)
|
395
|
+
.and have_attributes Name: 'specguest'
|
396
|
+
end
|
397
|
+
end
|
398
|
+
end
|
399
|
+
|
400
|
+
describe '#view_user_type' do
|
401
|
+
subject { view_loader.view_user_type }
|
402
|
+
|
403
|
+
let :view_loader do
|
404
|
+
described_class.new host: 'localhost',
|
405
|
+
database: 'SPSPEC',
|
406
|
+
collection: 'Test Collection',
|
407
|
+
config: config
|
408
|
+
end
|
409
|
+
|
410
|
+
context 'when discipline level' do
|
411
|
+
before { view_loader.target = :discipline }
|
412
|
+
|
413
|
+
it { is_expected.to be_nil }
|
414
|
+
end
|
415
|
+
|
416
|
+
context 'when collection level' do
|
417
|
+
before { view_loader.target = :collection }
|
418
|
+
|
419
|
+
it { is_expected.to be_nil }
|
420
|
+
end
|
421
|
+
|
422
|
+
context 'when user type level' do
|
423
|
+
before { view_loader.target = { user_type: 'manager' } }
|
424
|
+
|
425
|
+
it { is_expected.to eq 'manager' }
|
426
|
+
end
|
427
|
+
|
428
|
+
context 'when user level' do
|
429
|
+
before { view_loader.target = { user: 'specguest' } }
|
430
|
+
|
431
|
+
it { is_expected.to eq 'guest' }
|
432
|
+
end
|
433
|
+
end
|
434
|
+
end
|
435
|
+
end
|
436
|
+
end
|
@@ -0,0 +1,105 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module Specify
|
4
|
+
RSpec.describe Session do
|
5
|
+
let :session do
|
6
|
+
described_class.new('specuser', 'Test Collection')
|
7
|
+
end
|
8
|
+
|
9
|
+
describe '#close' do
|
10
|
+
let :collection do
|
11
|
+
Model::Collection.first CollectionName: 'Test Collection'
|
12
|
+
end
|
13
|
+
|
14
|
+
let(:user) { Model::User.first Name: 'specuser' }
|
15
|
+
|
16
|
+
before { user.log_in(collection) }
|
17
|
+
|
18
|
+
it do
|
19
|
+
expect(session.close)
|
20
|
+
.to be_a(described_class)
|
21
|
+
.and have_attributes active: false,
|
22
|
+
collection: collection,
|
23
|
+
user: user
|
24
|
+
end
|
25
|
+
|
26
|
+
it do
|
27
|
+
expect { session.close }
|
28
|
+
.to change { Model::User.first(Name: 'specuser').IsLoggedIn }
|
29
|
+
.from(true).to(false)
|
30
|
+
end
|
31
|
+
|
32
|
+
context 'when observed by a database' do
|
33
|
+
before { SPSPEC << session }
|
34
|
+
|
35
|
+
it do
|
36
|
+
expect { session.close }
|
37
|
+
.to change(SPSPEC, :sessions)
|
38
|
+
.from(including(an_instance_of(described_class)))
|
39
|
+
.to be_empty
|
40
|
+
end
|
41
|
+
end
|
42
|
+
end
|
43
|
+
|
44
|
+
describe '#open' do
|
45
|
+
let :collection do
|
46
|
+
Model::Collection.first CollectionName: 'Test Collection'
|
47
|
+
end
|
48
|
+
|
49
|
+
let(:user) { Model::User.first Name: 'specuser' }
|
50
|
+
|
51
|
+
before { user.log_out }
|
52
|
+
|
53
|
+
it do
|
54
|
+
expect(session.open)
|
55
|
+
.to be_a(described_class)
|
56
|
+
.and have_attributes active: true,
|
57
|
+
collection: collection,
|
58
|
+
user: user
|
59
|
+
end
|
60
|
+
|
61
|
+
it 'opens a session' do
|
62
|
+
expect { session.open }
|
63
|
+
.to change { Model::User.first(Name: 'specuser').IsLoggedIn }
|
64
|
+
.from(false).to(true)
|
65
|
+
end
|
66
|
+
end
|
67
|
+
|
68
|
+
describe '#open?' do
|
69
|
+
context 'when the session is open' do
|
70
|
+
subject { session.open? }
|
71
|
+
|
72
|
+
before { session.open }
|
73
|
+
|
74
|
+
it { is_expected.to be_truthy }
|
75
|
+
end
|
76
|
+
|
77
|
+
context 'when the session is closed' do
|
78
|
+
subject { session.open? }
|
79
|
+
|
80
|
+
before { session.close }
|
81
|
+
|
82
|
+
it { is_expected.to be_falsey }
|
83
|
+
end
|
84
|
+
end
|
85
|
+
|
86
|
+
describe '#session_agent' do
|
87
|
+
subject { session.session_agent }
|
88
|
+
|
89
|
+
let :division do
|
90
|
+
Model::Collection.first(CollectionName: 'Test Collection')
|
91
|
+
.discipline.division
|
92
|
+
end
|
93
|
+
|
94
|
+
before { session.open }
|
95
|
+
|
96
|
+
it do
|
97
|
+
is_expected.to be_a(Model::Agent)
|
98
|
+
.and have_attributes Email: 'john.doe@example.com',
|
99
|
+
FirstName: 'John',
|
100
|
+
LastName: 'Doe',
|
101
|
+
division: division
|
102
|
+
end
|
103
|
+
end
|
104
|
+
end
|
105
|
+
end
|