spatial_stats 1.0.3 → 1.0.4
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- checksums.yaml +4 -4
- data/README.md +11 -2
- data/lib/spatial_stats/global/bivariate_moran.rb +17 -0
- data/lib/spatial_stats/global/stat.rb +15 -0
- data/lib/spatial_stats/local/bivariate_moran.rb +18 -0
- data/lib/spatial_stats/local/stat.rb +15 -0
- data/lib/spatial_stats/spatial_stats.so +0 -0
- data/lib/spatial_stats/utils.rb +25 -0
- data/lib/spatial_stats/version.rb +1 -1
- data/lib/spatial_stats/weights/weights_matrix.rb +10 -0
- metadata +7 -7
checksums.yaml
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---
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metadata.gz:
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data.tar.gz: b767cc6ed7f22ce4096965a6172f77d21a348d51bd84dc3b96f0d51bf16e2f4f92617e21e9bcda1a36eeda2cd5c07c51452dd55d9e5a62567e206bf7a06c8fe0
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data/README.md
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![Spatial Stats](/assets/ruby.svg)
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[![Build Status](https://travis-ci.com/keithdoggett/spatial_stats.svg?branch=master)](https://travis-ci.com/keithdoggett/spatial_stats)
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[Docs](https://keithdoggett.github.io/spatial_stats)
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# SpatialStats
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SpatialStats is an ActiveRecord plugin that utilizes PostGIS
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SpatialStats is an ActiveRecord/Rails plugin that utilizes PostGIS to compute weights/statistics of spatial data sets in Rails Apps.
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## Installation
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@@ -327,7 +329,9 @@ Summaries of milestones for v1.x and v2.0. These lists are subject to change. If
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- Add support for .gal/.swm file imports
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- Add support for Rate variables
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- Add support for Bayes smoothing
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- ~Add support for Bonferroni Bounds and FDR~
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4. General
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- ~Add new stat constructors that only rely on a weights matrix and data vector~
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- Point Pattern Analysis Module
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- Regression Module
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@@ -336,6 +340,11 @@ Summaries of milestones for v1.x and v2.0. These lists are subject to change. If
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- Break gem into core `spatial_stats` that will not include queries module and `spatial_stats-activerecord`. This will remove the dependency on rails for the core gem.
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- Create `spatial_stats-import/geojson/shp` gem that will allow importing files and generating a `WeightsMatrix`. Will likely rely on `RGeo` or another spatial lib.
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### Other TODOs
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- Update Docs to show `from_observation` when version is bumped
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- Refactor `MultivariateGeary` so that it can be used without `activerecord` by adding `from_observations` and supporting methods.
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## License
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The gem is available as open source under the terms of the [BSD-3-Clause](https://opensource.org/licenses/BSD-3-Clause).
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@weights = weights.standardize
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end
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##
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# A new instance of BivariateMoran, from vector and weights.
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#
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# @param [Array] x observations of dataset
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# @param [WeightsMatrix] weights to define relationships between observations
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#
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# @return [BivariateMoran]
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def self.from_observations(x, y, weights)
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n = weights.n
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raise ArgumentError, 'Data size != weights.n' if x.size != n || y.size != n
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instance = new(nil, nil, nil, weights.standardize)
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instance.x = x
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instance.y = y
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instance
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end
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##
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# Computes the global spatial correlation of x against spatially lagged
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# y.
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end
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attr_accessor :scope, :field, :weights
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##
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# A new instance of Stat, from vector and weights.
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#
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# @param [Array] x observations of dataset
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# @param [WeightsMatrix] weights to define relationships between observations
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#
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# @return [Stat]
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def self.from_observations(x, weights)
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raise ArgumentError, 'Data size != weights.n' if x.size != weights.n
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instance = new(nil, nil, weights.standardize)
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instance.x = x
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instance
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end
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def stat
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raise NotImplementedError, 'method stat not defined'
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end
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end
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attr_accessor :scope, :x_field, :y_field, :weights
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##
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# A new instance of BivariateMoran, from vector and weights.
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#
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# @param [Array] x observations of dataset
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# @param [Array] y observations of dataset
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# @param [WeightsMatrix] weights to define relationships between observations
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#
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# @return [BivariateMoran]
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def self.from_observations(x, y, weights)
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n = weights.n
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raise ArgumentError, 'Data size != weights.n' if x.size != n || y.size != n
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instance = new(nil, nil, nil, weights.standardize)
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instance.x = x
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instance.y = y
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instance
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end
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##
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# Computes the local indicator of spatial correlation for
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# x against lagged y.
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end
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attr_accessor :scope, :field, :weights
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##
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# A new instance of Stat, from vector and weights.
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#
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# @param [Array] x observations of dataset
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# @param [WeightsMatrix] weights to define relationships between observations
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#
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# @return [Stat]
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def self.from_observations(x, weights)
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raise ArgumentError, 'Data size != weights.n' if x.size != weights.n
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instance = new(nil, nil, weights.standardize)
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instance.x = x
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instance
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end
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def stat
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raise NotImplementedError, 'method stat not defined'
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end
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Binary file
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data/lib/spatial_stats/utils.rb
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##
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# The Utils module contains various utilities used in the gem.
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module Utils
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##
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# Compute the false discovery rate (FDR) of a set of p-values given
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# an alpha value.
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#
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# If there is no FDR available in the dataset, the Bonferroni Bound is
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# returned instead.
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#
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# @param [Array] pvals from an mc test
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# @param [Float] alpha value for the fdr
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#
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# @returns [Float] either the FDR or Bonferroni Bound
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def self.fdr(pvals, alpha)
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n = pvals.size
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b_bound = alpha / n
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pvals.sort!
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p_val = b_bound
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(0..n - 1).each do |i|
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p_fdr = (i + 1) * b_bound
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break unless pvals[i] <= p_fdr
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p_val = p_fdr
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end
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p_val
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end
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end
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end
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end
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attr_accessor :keys, :weights, :n
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##
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# Equality operator
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#
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# @param [WeightsMatrix] other WeightsMatrix
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#
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# @return [TrueClass, FalseClass] equality result
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def ==(other)
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weights == other.weights
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end
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##
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# Compute the n x n Numo::Narray of the weights hash.
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#
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: spatial_stats
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version: !ruby/object:Gem::Version
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version: 1.0.
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version: 1.0.4
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platform: ruby
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authors:
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- Keith Doggett
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2020-
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date: 2020-12-19 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: numo-narray
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name: rails
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: 6.0.0
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: 6.0.0
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- !ruby/object:Gem::Dependency
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name: tzinfo
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.2.6
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.2.6
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description: An ActiveRecord/PostGIS extension that provides statistical methods to
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubygems_version: 3.0.
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rubygems_version: 3.0.8
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signing_key:
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specification_version: 4
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summary: An ActiveRecord/PostGIS extension that provides statistical methods to spatial
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