spatial_stats 0.1.1 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +185 -9
- data/lib/spatial_stats.rb +7 -4
- data/lib/spatial_stats/enumerable_ext.rb +29 -0
- data/lib/spatial_stats/global.rb +15 -0
- data/lib/spatial_stats/global/bivariate_moran.rb +48 -4
- data/lib/spatial_stats/global/moran.rb +69 -19
- data/lib/spatial_stats/global/stat.rb +29 -17
- data/lib/spatial_stats/local.rb +16 -1
- data/lib/spatial_stats/local/bivariate_moran.rb +45 -4
- data/lib/spatial_stats/local/geary.rb +34 -47
- data/lib/spatial_stats/local/getis_ord.rb +109 -0
- data/lib/spatial_stats/local/moran.rb +55 -22
- data/lib/spatial_stats/local/multivariate_geary.rb +77 -22
- data/lib/spatial_stats/local/stat.rb +160 -88
- data/lib/spatial_stats/narray_ext.rb +27 -0
- data/lib/spatial_stats/queries.rb +6 -0
- data/lib/spatial_stats/queries/variables.rb +16 -3
- data/lib/spatial_stats/queries/weights.rb +91 -9
- data/lib/spatial_stats/utils.rb +7 -0
- data/lib/spatial_stats/utils/lag.rb +34 -2
- data/lib/spatial_stats/version.rb +1 -1
- data/lib/spatial_stats/weights.rb +9 -0
- data/lib/spatial_stats/weights/contiguous.rb +18 -0
- data/lib/spatial_stats/weights/distant.rb +41 -4
- data/lib/spatial_stats/weights/weights_matrix.rb +25 -0
- metadata +5 -4
- data/lib/spatial_stats/local/g.rb +0 -75
metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: spatial_stats
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version: !ruby/object:Gem::Version
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version: 0.
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version: 0.2.1
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platform: ruby
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authors:
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- Keith Doggett
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2020-03
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+
date: 2020-04-03 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: numo-narray
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@@ -129,8 +129,8 @@ files:
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- lib/spatial_stats/global/stat.rb
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- lib/spatial_stats/local.rb
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- lib/spatial_stats/local/bivariate_moran.rb
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-
- lib/spatial_stats/local/g.rb
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- lib/spatial_stats/local/geary.rb
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+
- lib/spatial_stats/local/getis_ord.rb
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- lib/spatial_stats/local/moran.rb
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- lib/spatial_stats/local/multivariate_geary.rb
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- lib/spatial_stats/local/stat.rb
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@@ -150,7 +150,8 @@ files:
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homepage: https://www.github.com/keithdoggett/spatial_stats
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licenses:
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- MIT
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-
metadata:
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metadata:
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documentation_uri: https://keithdoggett.github.io/spatial_stats/docs/index.html
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post_install_message:
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rdoc_options: []
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require_paths:
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@@ -1,75 +0,0 @@
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# frozen_string_literal: true
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-
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module SpatialStats
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module Local
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class G < Stat
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def initialize(scope, field, weights, star = false)
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super(scope, field, weights)
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@star = star
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end
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attr_accessor :star
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attr_writer :x, :z_lag
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def i
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x.each_with_index.map do |_x_val, idx|
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i_i(idx)
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end
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end
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def i_i(idx)
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x_lag[idx] / denominators[idx]
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end
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def x
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@x ||= SpatialStats::Queries::Variables.query_field(@scope, @field)
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end
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alias z x
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def star?
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@star ||= weights.full.trace.positive?
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end
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private
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def w
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@w ||= begin
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if star?
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# TODO: try to fix this because it will still likely be a
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# bottleneck in mc testing
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weights.full.windowed.row_standardized
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else
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weights.standardized
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end
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end
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end
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def z_lag
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# window if star is true
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@z_lag ||= begin
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if star?
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SpatialStats::Utils::Lag.window_sum(w, x)
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else
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SpatialStats::Utils::Lag.neighbor_sum(w, x)
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end
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end
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end
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alias x_lag z_lag
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def denominators
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@denominators ||= begin
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n = w.shape[0]
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if star?
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[x.sum] * n
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else
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# add everything but i
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(0..n - 1).each.map do |idx|
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terms = x.dup
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terms.delete_at(idx)
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terms.sum
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end
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end
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end
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end
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end
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end
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end
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