spatial_stats 0.1.0

data/lib/spatial_stats/weights/distant.rb

@@ -0,0 +1,77 @@
+# frozen_string_literal: true
+
+module SpatialStats
+  module Weights
+    module Distant
+      def self.distance_band(scope, field, bandwidth)
+        p_key = scope.primary_key
+        keys = scope.pluck(p_key).sort
+
+        neighbors = SpatialStats::Queries::Weights
+                    .distance_band_neighbors(scope, field, bandwidth)
+
+        neighbors = neighbors.group_by(&:i_id)
+        weights = neighbors.transform_values do |value|
+          value.map do |neighbor|
+            hash = neighbor.as_json(only: [:j_id]).symbolize_keys
+            hash[:weight] = 1
+            hash
+          end
+        end
+        SpatialStats::Weights::WeightsMatrix.new(keys, weights)
+      end
+
+      def self.knn(scope, field, n)
+        p_key = scope.primary_key
+        keys = scope.pluck(p_key).sort
+
+        neighbors = SpatialStats::Queries::Weights
+                    .knn(scope, field, n)
+
+        neighbors = neighbors.group_by(&:i_id)
+        weights = neighbors.transform_values do |value|
+          value.map do |neighbor|
+            hash = neighbor.as_json(only: [:j_id]).symbolize_keys
+            hash[:weight] = 1
+            hash
+          end
+        end
+        SpatialStats::Weights::WeightsMatrix.new(keys, weights)
+      end
+
+      def self.idw_band(scope, field, bandwidth, alpha = 1)
+        p_key = scope.primary_key
+        keys = scope.pluck(p_key).sort
+
+        neighbors = SpatialStats::Queries::Weights
+                    .idw_band(scope, field, bandwidth, alpha)
+        neighbors = neighbors.group_by { |pair| pair[:i_id] }
+
+        # only keep j_id and weight
+        weights = neighbors.transform_values do |value|
+          value.map do |neighbor|
+            { weight: neighbor[:weight], j_id: neighbor[:j_id] }
+          end
+        end
+        SpatialStats::Weights::WeightsMatrix.new(keys, weights)
+      end
+
+      def self.idw_knn(scope, field, n, alpha = 1)
+        p_key = scope.primary_key
+        keys = scope.pluck(p_key).sort
+
+        neighbors = SpatialStats::Queries::Weights
+                    .idw_knn(scope, field, n, alpha)
+        neighbors = neighbors.group_by { |pair| pair[:i_id] }
+
+        # only keep j_id and weight
+        weights = neighbors.transform_values do |value|
+          value.map do |neighbor|
+            { weight: neighbor[:weight], j_id: neighbor[:j_id] }
+          end
+        end
+        SpatialStats::Weights::WeightsMatrix.new(keys, weights)
+      end
+    end
+  end
+end

data/lib/spatial_stats/weights/weights_matrix.rb

@@ -0,0 +1,42 @@
+# frozen_string_literal: true
+
+require 'numo/narray'
+
+module SpatialStats
+  module Weights
+    class WeightsMatrix
+      def initialize(keys, weights)
+        @keys = keys
+        @weights = weights
+        @n = keys.size
+      end
+      attr_accessor :keys, :weights, :n
+
+      def full
+        # returns a square matrix Wij using @keys as the order of items
+        @full ||= begin
+          rows = []
+          @keys.each do |i|
+            # iterate through each key to get the data for the row
+            row = @keys.map do |j|
+              neighbors = @weights[i]
+              match = neighbors.find { |neighbor| neighbor[:j_id] == j }
+              if match
+                match[:weight]
+              else
+                0
+              end
+            end
+            rows << row
+          end
+
+          Numo::DFloat.cast(rows)
+        end
+      end
+
+      def standardized
+        @standardized ||= full.row_standardized
+      end
+    end
+  end
+end

data/lib/spatial_stats/weights.rb

@@ -0,0 +1,5 @@
+# frozen_string_literal: true
+
+require 'spatial_stats/weights/contiguous'
+require 'spatial_stats/weights/distant'
+require 'spatial_stats/weights/weights_matrix'

data/lib/spatial_stats.rb

@@ -0,0 +1,18 @@
+# frozen_string_literal: true
+
+require 'spatial_stats/railtie'
+require 'spatial_stats/enumerable_ext'
+require 'spatial_stats/global'
+require 'spatial_stats/local'
+require 'spatial_stats/narray_ext'
+require 'spatial_stats/queries'
+require 'spatial_stats/utils'
+require 'spatial_stats/weights'
+
+module SpatialStats
+  def self.included(klass)
+    puts 'here', klass
+    # klass.extend(SpatialStats::Queries::Weights)
+  end
+  # Your code goes here...
+end

data/lib/tasks/spatial_stats_tasks.rake

@@ -0,0 +1,5 @@
+# frozen_string_literal: true
+# desc "Explaining what the task does"
+# task :spatial_stats do
+#   # Task goes here
+# end

metadata

@@ -0,0 +1,174 @@
+--- !ruby/object:Gem::Specification
+name: spatial_stats
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- Keith Doggett
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2020-03-29 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: numo-narray
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.9.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.9.1
+- !ruby/object:Gem::Dependency
+  name: rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.0.0
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.0.0
+- !ruby/object:Gem::Dependency
+  name: activerecord-postgis-adapter
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.0.0
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.0.0
+- !ruby/object:Gem::Dependency
+  name: database_cleaner
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.8.3
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.8.3
+- !ruby/object:Gem::Dependency
+  name: pg
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.0'
+- !ruby/object:Gem::Dependency
+  name: ruby-prof
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.3.1
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.3.1
+- !ruby/object:Gem::Dependency
+  name: tzinfo
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.2.6
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.2.6
+description: An ActiveRecord/PostGIS extension that providesstatistical methods to
+  spatial postgresql databases.It integrates with ActiveRecord to perform spatial
+  weighting in PostGIS and performs statistical computations inside your rails app.
+  Supports contiguious and distance-based calculations.
+email:
+- keith.doggett887@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- MIT-LICENSE
+- README.md
+- Rakefile
+- lib/spatial_stats.rb
+- lib/spatial_stats/enumerable_ext.rb
+- lib/spatial_stats/global.rb
+- lib/spatial_stats/global/bivariate_moran.rb
+- lib/spatial_stats/global/moran.rb
+- lib/spatial_stats/global/stat.rb
+- lib/spatial_stats/local.rb
+- lib/spatial_stats/local/bivariate_moran.rb
+- lib/spatial_stats/local/g.rb
+- lib/spatial_stats/local/geary.rb
+- lib/spatial_stats/local/moran.rb
+- lib/spatial_stats/local/multivariate_geary.rb
+- lib/spatial_stats/local/stat.rb
+- lib/spatial_stats/narray_ext.rb
+- lib/spatial_stats/queries.rb
+- lib/spatial_stats/queries/variables.rb
+- lib/spatial_stats/queries/weights.rb
+- lib/spatial_stats/railtie.rb
+- lib/spatial_stats/utils.rb
+- lib/spatial_stats/utils/lag.rb
+- lib/spatial_stats/version.rb
+- lib/spatial_stats/weights.rb
+- lib/spatial_stats/weights/contiguous.rb
+- lib/spatial_stats/weights/distant.rb
+- lib/spatial_stats/weights/weights_matrix.rb
+- lib/tasks/spatial_stats_tasks.rake
+homepage: https://www.github.com/Kdoggett887/spatial_stats
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: 2.3.0
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubygems_version: 3.0.3
+signing_key: 
+specification_version: 4
+summary: An ActiveRecord/PostGIS extension that provides statistical methods to spatial
+  postgresql databases.
+test_files: []