snp-search 0.8.0 → 0.9.0

data/README.rdoc

@@ -30,7 +30,6 @@ To run snp-search, you need to have 3 files:
 
 Once you have these files ready, you may run snp-search with the following options:
 
-
   -V	Enable verbose mode
   -n	Name of your database	Optional, default = snp_db.sqlite3
   -v	.vcf file	Required
@@ -44,6 +43,12 @@ Once you have these files ready, you may run snp-search with the following optio
 Usage:
   snp-search -n my_snp_db.sqlite3 -r my_ref.gbk -v my_vcf_file.vcf -s my_list_of_strains.txt
 
+== Output
+The output is your database in sqlite3 format.  If you like to view your table(s) and perform queries you can type 
+  sqlite3 snp_db.sqlite3
+
+Alternatively, you may download a SQL tool to see a GUI of your database (e.g. SQLite sorcerer)
+
 Have fun snp-searching!
 
 == Copyright

data/VERSION

@@ -1 +1 @@
-0.8.0
+0.9.0

data/snp-search.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "snp-search"
-  s.version = "0.8.0"
+  s.version = "0.9.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Ali Al-Shahib", "Anthony Underwood"]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: snp-search
 version: !ruby/object:Gem::Version
-  version: 0.8.0
+  version: 0.9.0
   prerelease: 
 platform: ruby
 authors:
@@ -14,7 +14,7 @@ date: 2011-12-01 00:00:00.000000000Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activerecord
-  requirement: &2154643260 !ruby/object:Gem::Requirement
+  requirement: &2166849440 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2154643260
+  version_requirements: *2166849440
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2154642660 !ruby/object:Gem::Requirement
+  requirement: &2166831220 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2154642660
+  version_requirements: *2166831220
 - !ruby/object:Gem::Dependency
   name: slop
-  requirement: &2154642060 !ruby/object:Gem::Requirement
+  requirement: &2166830740 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2154642060
+  version_requirements: *2166830740
 - !ruby/object:Gem::Dependency
   name: rspec
-  requirement: &2154641460 !ruby/object:Gem::Requirement
+  requirement: &2166830260 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -55,10 +55,10 @@ dependencies:
         version: 2.3.0
   type: :development
   prerelease: false
-  version_requirements: *2154641460
+  version_requirements: *2166830260
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &2154640860 !ruby/object:Gem::Requirement
+  requirement: &2166829720 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -66,10 +66,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *2154640860
+  version_requirements: *2166829720
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &2154640260 !ruby/object:Gem::Requirement
+  requirement: &2166798480 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -77,10 +77,10 @@ dependencies:
         version: 1.6.4
   type: :development
   prerelease: false
-  version_requirements: *2154640260
+  version_requirements: *2166798480
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &2154639660 !ruby/object:Gem::Requirement
+  requirement: &2166797900 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -88,7 +88,7 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2154639660
+  version_requirements: *2166797900
 description: Use the snp-search toolset to query the SNP database
 email: ali.al-shahib@hpa.org.uk
 executables:
@@ -130,7 +130,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 977817954600315423
+      hash: 3156529109517934912
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: