snp-search 0.8.0 → 0.9.0

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Files changed (4) hide show
  1. data/README.rdoc +6 -1
  2. data/VERSION +1 -1
  3. data/snp-search.gemspec +1 -1
  4. metadata +16 -16
data/README.rdoc CHANGED
@@ -30,7 +30,6 @@ To run snp-search, you need to have 3 files:
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  Once you have these files ready, you may run snp-search with the following options:
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-
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  -V Enable verbose mode
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  -n Name of your database Optional, default = snp_db.sqlite3
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  -v .vcf file Required
@@ -44,6 +43,12 @@ Once you have these files ready, you may run snp-search with the following optio
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  Usage:
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  snp-search -n my_snp_db.sqlite3 -r my_ref.gbk -v my_vcf_file.vcf -s my_list_of_strains.txt
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+ == Output
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+ The output is your database in sqlite3 format. If you like to view your table(s) and perform queries you can type
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+ sqlite3 snp_db.sqlite3
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+
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+ Alternatively, you may download a SQL tool to see a GUI of your database (e.g. SQLite sorcerer)
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+
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  Have fun snp-searching!
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  == Copyright
data/VERSION CHANGED
@@ -1 +1 @@
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- 0.8.0
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+ 0.9.0
data/snp-search.gemspec CHANGED
@@ -5,7 +5,7 @@
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  Gem::Specification.new do |s|
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  s.name = "snp-search"
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- s.version = "0.8.0"
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+ s.version = "0.9.0"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Ali Al-Shahib", "Anthony Underwood"]
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: snp-search
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  version: !ruby/object:Gem::Version
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- version: 0.8.0
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+ version: 0.9.0
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  prerelease:
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  platform: ruby
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  authors:
@@ -14,7 +14,7 @@ date: 2011-12-01 00:00:00.000000000Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: activerecord
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- requirement: &2154643260 !ruby/object:Gem::Requirement
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+ requirement: &2166849440 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2154643260
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+ version_requirements: *2166849440
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  - !ruby/object:Gem::Dependency
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  name: bio
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- requirement: &2154642660 !ruby/object:Gem::Requirement
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+ requirement: &2166831220 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2154642660
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+ version_requirements: *2166831220
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  - !ruby/object:Gem::Dependency
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  name: slop
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- requirement: &2154642060 !ruby/object:Gem::Requirement
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+ requirement: &2166830740 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *2154642060
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+ version_requirements: *2166830740
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  - !ruby/object:Gem::Dependency
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  name: rspec
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- requirement: &2154641460 !ruby/object:Gem::Requirement
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+ requirement: &2166830260 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -55,10 +55,10 @@ dependencies:
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  version: 2.3.0
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  type: :development
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  prerelease: false
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- version_requirements: *2154641460
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+ version_requirements: *2166830260
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  - !ruby/object:Gem::Dependency
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  name: bundler
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- requirement: &2154640860 !ruby/object:Gem::Requirement
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+ requirement: &2166829720 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -66,10 +66,10 @@ dependencies:
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  version: 1.0.0
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  type: :development
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  prerelease: false
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- version_requirements: *2154640860
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+ version_requirements: *2166829720
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  - !ruby/object:Gem::Dependency
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  name: jeweler
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- requirement: &2154640260 !ruby/object:Gem::Requirement
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+ requirement: &2166798480 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ~>
@@ -77,10 +77,10 @@ dependencies:
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  version: 1.6.4
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  type: :development
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  prerelease: false
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- version_requirements: *2154640260
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+ version_requirements: *2166798480
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  - !ruby/object:Gem::Dependency
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  name: rcov
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- requirement: &2154639660 !ruby/object:Gem::Requirement
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+ requirement: &2166797900 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -88,7 +88,7 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *2154639660
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+ version_requirements: *2166797900
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  description: Use the snp-search toolset to query the SNP database
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  email: ali.al-shahib@hpa.org.uk
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  executables:
@@ -130,7 +130,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  version: '0'
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  segments:
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  - 0
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- hash: 977817954600315423
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+ hash: 3156529109517934912
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  none: false
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  requirements: