snp-search 2.10.8 → 2.11.0
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- data/Manual/snp-search_user_manual.pdf +0 -0
- data/README.rdoc +3 -3
- data/VERSION +1 -1
- data/bin/snp-search +23 -20
- data/lib/create_methods.rb +53 -23
- data/lib/filter_ignore_snps_methods.rb +7 -6
- data/lib/output_information_methods.rb +18 -15
- data/lib/snp-search.rb +7 -6
- data/snp-search.gemspec +6 -3
- data/test_data/Ecoli_test_set.vcf +1851 -0
- data/test_data/Reference_file_Ecoli_test_set.gbk +4122 -0
- metadata +6 -3
metadata
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: snp-search
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3
3
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version: !ruby/object:Gem::Version
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|
4
|
-
version: 2.
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4
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+
version: 2.11.0
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5
5
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prerelease:
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6
6
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platform: ruby
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7
7
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authors:
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@@ -10,7 +10,7 @@ authors:
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10
10
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autorequire:
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|
11
11
|
bindir: bin
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|
12
12
|
cert_chain: []
|
|
13
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-
date:
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|
13
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+
date: 2014-01-03 00:00:00.000000000 Z
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|
14
14
|
dependencies:
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|
15
15
|
- !ruby/object:Gem::Dependency
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|
16
16
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name: activerecord
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@@ -186,6 +186,7 @@ files:
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186
186
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- Gemfile
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|
187
187
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- Gemfile.lock
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|
188
188
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- LICENSE.txt
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|
189
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+
- Manual/snp-search_user_manual.pdf
|
|
189
190
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- README
|
|
190
191
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- README.rdoc
|
|
191
192
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- Rakefile
|
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@@ -212,6 +213,8 @@ files:
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|
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212
213
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- snp-search.gemspec
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|
213
214
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- spec/snp-search_spec.rb
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|
214
215
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- spec/spec_helper.rb
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|
216
|
+
- test_data/Ecoli_test_set.vcf
|
|
217
|
+
- test_data/Reference_file_Ecoli_test_set.gbk
|
|
215
218
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homepage: http://github.com/phe-bioinformatics/snp-search
|
|
216
219
|
licenses:
|
|
217
220
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- MIT
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|
@@ -227,7 +230,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
|
227
230
|
version: '0'
|
|
228
231
|
segments:
|
|
229
232
|
- 0
|
|
230
|
-
hash:
|
|
233
|
+
hash: 3454425392341953409
|
|
231
234
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
232
235
|
none: false
|
|
233
236
|
requirements:
|