snp-search 2.0.0 → 2.2.0
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- data/Gemfile +2 -1
- data/Gemfile.lock +3 -2
- data/VERSION +1 -1
- data/bin/snp-search +1 -3
- data/snp-search.gemspec +7 -4
- metadata +32 -21
data/Gemfile
CHANGED
@@ -5,9 +5,10 @@ source "http://rubygems.org"
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5
5
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6
6
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gem "activerecord", "~> 3.1.3"
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7
7
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gem "bio", "~> 1.4.2"
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8
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-
gem "slop", "~>
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8
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+
gem "slop", "~> 3.3.1"
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9
9
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gem 'sqlite3', "~> 1.3.4"
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10
10
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gem 'activerecord-import', "~> 0.2.8"
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11
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+
gem "diff-lcs", "~> 1.1.3"
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11
12
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12
13
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# Add dependencies to develop your gem here.
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13
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# Include everything needed to run rake, tests, features, etc.
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data/Gemfile.lock
CHANGED
@@ -36,7 +36,7 @@ GEM
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36
36
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rspec-expectations (2.3.0)
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37
37
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diff-lcs (~> 1.1.2)
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38
38
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rspec-mocks (2.3.0)
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39
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-
slop (
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39
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+
slop (3.3.1)
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40
40
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sqlite3 (1.3.4)
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41
41
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tzinfo (0.3.31)
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42
42
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@@ -48,8 +48,9 @@ DEPENDENCIES
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48
48
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activerecord-import (~> 0.2.8)
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49
49
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bio (~> 1.4.2)
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50
50
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bundler (~> 1.0.0)
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51
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+
diff-lcs (~> 1.1.3)
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51
52
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jeweler (~> 1.6.4)
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52
53
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rcov
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53
54
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rspec (~> 2.3.0)
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54
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-
slop (~>
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55
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+
slop (~> 3.3.1)
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55
56
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sqlite3 (~> 1.3.4)
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
2.
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1
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+
2.2.0
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data/bin/snp-search
CHANGED
@@ -3,8 +3,6 @@ require 'snp_db_connection'
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3
3
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require 'snp_db_models'
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4
4
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require 'snp_db_schema'
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5
5
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require 'activerecord-import'
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6
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-
gem "slop", "~> 3.3.1"
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7
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-
# gem "slop", "~> 2.4.0"
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8
6
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require 'slop'
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9
7
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10
8
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opts = Slop.parse do
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@@ -328,4 +326,4 @@ elsif opts[:output]
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328
326
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|
329
327
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else
|
330
328
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puts opts.help
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331
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-
end
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329
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+
end
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data/snp-search.gemspec
CHANGED
@@ -5,7 +5,7 @@
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5
5
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6
6
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Gem::Specification.new do |s|
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7
7
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s.name = "snp-search"
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8
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-
s.version = "2.
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8
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+
s.version = "2.2.0"
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9
9
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10
10
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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11
11
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s.authors = ["Ali Al-Shahib", "Anthony Underwood"]
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@@ -48,9 +48,10 @@ Gem::Specification.new do |s|
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48
48
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if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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49
49
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s.add_runtime_dependency(%q<activerecord>, ["~> 3.1.3"])
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50
50
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s.add_runtime_dependency(%q<bio>, ["~> 1.4.2"])
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51
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-
s.add_runtime_dependency(%q<slop>, ["~>
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51
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+
s.add_runtime_dependency(%q<slop>, ["~> 3.3.1"])
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52
52
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s.add_runtime_dependency(%q<sqlite3>, ["~> 1.3.4"])
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53
53
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s.add_runtime_dependency(%q<activerecord-import>, ["~> 0.2.8"])
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54
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+
s.add_runtime_dependency(%q<diff-lcs>, ["~> 1.1.3"])
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54
55
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s.add_development_dependency(%q<rspec>, ["~> 2.3.0"])
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55
56
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s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
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56
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s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
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@@ -58,9 +59,10 @@ Gem::Specification.new do |s|
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else
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s.add_dependency(%q<activerecord>, ["~> 3.1.3"])
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s.add_dependency(%q<bio>, ["~> 1.4.2"])
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61
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-
s.add_dependency(%q<slop>, ["~>
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62
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+
s.add_dependency(%q<slop>, ["~> 3.3.1"])
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s.add_dependency(%q<sqlite3>, ["~> 1.3.4"])
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63
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s.add_dependency(%q<activerecord-import>, ["~> 0.2.8"])
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65
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+
s.add_dependency(%q<diff-lcs>, ["~> 1.1.3"])
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66
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s.add_dependency(%q<rspec>, ["~> 2.3.0"])
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s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
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@@ -69,9 +71,10 @@ Gem::Specification.new do |s|
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else
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s.add_dependency(%q<activerecord>, ["~> 3.1.3"])
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s.add_dependency(%q<bio>, ["~> 1.4.2"])
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72
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-
s.add_dependency(%q<slop>, ["~>
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74
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+
s.add_dependency(%q<slop>, ["~> 3.3.1"])
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s.add_dependency(%q<sqlite3>, ["~> 1.3.4"])
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s.add_dependency(%q<activerecord-import>, ["~> 0.2.8"])
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77
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+
s.add_dependency(%q<diff-lcs>, ["~> 1.1.3"])
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s.add_dependency(%q<rspec>, ["~> 2.3.0"])
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s.add_dependency(%q<bundler>, ["~> 1.0.0"])
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s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: snp-search
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version: !ruby/object:Gem::Version
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-
version: 2.
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+
version: 2.2.0
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prerelease:
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platform: ruby
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authors:
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@@ -14,7 +14,7 @@ date: 2012-08-02 00:00:00.000000000Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: activerecord
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-
requirement: &
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+
requirement: &2160033340 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -22,10 +22,10 @@ dependencies:
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version: 3.1.3
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *2160033340
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- !ruby/object:Gem::Dependency
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name: bio
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-
requirement: &
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+
requirement: &2160032640 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -33,21 +33,21 @@ dependencies:
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version: 1.4.2
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type: :runtime
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prerelease: false
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36
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-
version_requirements: *
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36
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+
version_requirements: *2160032640
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- !ruby/object:Gem::Dependency
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name: slop
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39
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-
requirement: &
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+
requirement: &2160031800 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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44
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-
version:
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+
version: 3.3.1
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type: :runtime
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prerelease: false
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47
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-
version_requirements: *
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47
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+
version_requirements: *2160031800
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48
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- !ruby/object:Gem::Dependency
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name: sqlite3
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50
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-
requirement: &
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+
requirement: &2160021660 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -55,10 +55,10 @@ dependencies:
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version: 1.3.4
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type: :runtime
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prerelease: false
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58
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-
version_requirements: *
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58
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+
version_requirements: *2160021660
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- !ruby/object:Gem::Dependency
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name: activerecord-import
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-
requirement: &
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+
requirement: &2160021080 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -66,10 +66,21 @@ dependencies:
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version: 0.2.8
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type: :runtime
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prerelease: false
|
69
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-
version_requirements: *
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69
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+
version_requirements: *2160021080
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+
- !ruby/object:Gem::Dependency
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name: diff-lcs
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+
requirement: &2160020440 !ruby/object:Gem::Requirement
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none: false
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requirements:
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+
- - ~>
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+
- !ruby/object:Gem::Version
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version: 1.1.3
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type: :runtime
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prerelease: false
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+
version_requirements: *2160020440
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- !ruby/object:Gem::Dependency
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name: rspec
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-
requirement: &
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+
requirement: &2160019880 !ruby/object:Gem::Requirement
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none: false
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requirements:
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86
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- - ~>
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@@ -77,10 +88,10 @@ dependencies:
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version: 2.3.0
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type: :development
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prerelease: false
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80
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-
version_requirements: *
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+
version_requirements: *2160019880
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- !ruby/object:Gem::Dependency
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name: bundler
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-
requirement: &
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+
requirement: &2160019340 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -88,10 +99,10 @@ dependencies:
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version: 1.0.0
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type: :development
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prerelease: false
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91
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-
version_requirements: *
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+
version_requirements: *2160019340
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- !ruby/object:Gem::Dependency
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name: jeweler
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94
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-
requirement: &
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+
requirement: &2160018780 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -99,10 +110,10 @@ dependencies:
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version: 1.6.4
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type: :development
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prerelease: false
|
102
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-
version_requirements: *
|
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+
version_requirements: *2160018780
|
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114
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- !ruby/object:Gem::Dependency
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115
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name: rcov
|
105
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-
requirement: &
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+
requirement: &2160018240 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -110,7 +121,7 @@ dependencies:
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version: '0'
|
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type: :development
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112
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prerelease: false
|
113
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-
version_requirements: *
|
124
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+
version_requirements: *2160018240
|
114
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description: Use the snp-search tool to create, import, manipulate and query your
|
115
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SNP database
|
116
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email: ali.al-shahib@hpa.org.uk
|
@@ -153,7 +164,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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153
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version: '0'
|
154
165
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segments:
|
155
166
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- 0
|
156
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-
hash:
|
167
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+
hash: -2122266153834504004
|
157
168
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required_rubygems_version: !ruby/object:Gem::Requirement
|
158
169
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none: false
|
159
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requirements:
|