snp-search 2.0.0 → 2.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (6) hide show
  1. data/Gemfile +2 -1
  2. data/Gemfile.lock +3 -2
  3. data/VERSION +1 -1
  4. data/bin/snp-search +1 -3
  5. data/snp-search.gemspec +7 -4
  6. metadata +32 -21
data/Gemfile CHANGED
@@ -5,9 +5,10 @@ source "http://rubygems.org"
5
5
 
6
6
  gem "activerecord", "~> 3.1.3"
7
7
  gem "bio", "~> 1.4.2"
8
- gem "slop", "~> 2.4.0"
8
+ gem "slop", "~> 3.3.1"
9
9
  gem 'sqlite3', "~> 1.3.4"
10
10
  gem 'activerecord-import', "~> 0.2.8"
11
+ gem "diff-lcs", "~> 1.1.3"
11
12
 
12
13
  # Add dependencies to develop your gem here.
13
14
  # Include everything needed to run rake, tests, features, etc.
data/Gemfile.lock CHANGED
@@ -36,7 +36,7 @@ GEM
36
36
  rspec-expectations (2.3.0)
37
37
  diff-lcs (~> 1.1.2)
38
38
  rspec-mocks (2.3.0)
39
- slop (2.4.0)
39
+ slop (3.3.1)
40
40
  sqlite3 (1.3.4)
41
41
  tzinfo (0.3.31)
42
42
 
@@ -48,8 +48,9 @@ DEPENDENCIES
48
48
  activerecord-import (~> 0.2.8)
49
49
  bio (~> 1.4.2)
50
50
  bundler (~> 1.0.0)
51
+ diff-lcs (~> 1.1.3)
51
52
  jeweler (~> 1.6.4)
52
53
  rcov
53
54
  rspec (~> 2.3.0)
54
- slop (~> 2.4.0)
55
+ slop (~> 3.3.1)
55
56
  sqlite3 (~> 1.3.4)
data/VERSION CHANGED
@@ -1 +1 @@
1
- 2.0.0
1
+ 2.2.0
data/bin/snp-search CHANGED
@@ -3,8 +3,6 @@ require 'snp_db_connection'
3
3
  require 'snp_db_models'
4
4
  require 'snp_db_schema'
5
5
  require 'activerecord-import'
6
- gem "slop", "~> 3.3.1"
7
- # gem "slop", "~> 2.4.0"
8
6
  require 'slop'
9
7
 
10
8
  opts = Slop.parse do
@@ -328,4 +326,4 @@ elsif opts[:output]
328
326
 
329
327
  else
330
328
  puts opts.help
331
- end
329
+ end
data/snp-search.gemspec CHANGED
@@ -5,7 +5,7 @@
5
5
 
6
6
  Gem::Specification.new do |s|
7
7
  s.name = "snp-search"
8
- s.version = "2.0.0"
8
+ s.version = "2.2.0"
9
9
 
10
10
  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
11
11
  s.authors = ["Ali Al-Shahib", "Anthony Underwood"]
@@ -48,9 +48,10 @@ Gem::Specification.new do |s|
48
48
  if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
49
49
  s.add_runtime_dependency(%q<activerecord>, ["~> 3.1.3"])
50
50
  s.add_runtime_dependency(%q<bio>, ["~> 1.4.2"])
51
- s.add_runtime_dependency(%q<slop>, ["~> 2.4.0"])
51
+ s.add_runtime_dependency(%q<slop>, ["~> 3.3.1"])
52
52
  s.add_runtime_dependency(%q<sqlite3>, ["~> 1.3.4"])
53
53
  s.add_runtime_dependency(%q<activerecord-import>, ["~> 0.2.8"])
54
+ s.add_runtime_dependency(%q<diff-lcs>, ["~> 1.1.3"])
54
55
  s.add_development_dependency(%q<rspec>, ["~> 2.3.0"])
55
56
  s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
56
57
  s.add_development_dependency(%q<jeweler>, ["~> 1.6.4"])
@@ -58,9 +59,10 @@ Gem::Specification.new do |s|
58
59
  else
59
60
  s.add_dependency(%q<activerecord>, ["~> 3.1.3"])
60
61
  s.add_dependency(%q<bio>, ["~> 1.4.2"])
61
- s.add_dependency(%q<slop>, ["~> 2.4.0"])
62
+ s.add_dependency(%q<slop>, ["~> 3.3.1"])
62
63
  s.add_dependency(%q<sqlite3>, ["~> 1.3.4"])
63
64
  s.add_dependency(%q<activerecord-import>, ["~> 0.2.8"])
65
+ s.add_dependency(%q<diff-lcs>, ["~> 1.1.3"])
64
66
  s.add_dependency(%q<rspec>, ["~> 2.3.0"])
65
67
  s.add_dependency(%q<bundler>, ["~> 1.0.0"])
66
68
  s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
@@ -69,9 +71,10 @@ Gem::Specification.new do |s|
69
71
  else
70
72
  s.add_dependency(%q<activerecord>, ["~> 3.1.3"])
71
73
  s.add_dependency(%q<bio>, ["~> 1.4.2"])
72
- s.add_dependency(%q<slop>, ["~> 2.4.0"])
74
+ s.add_dependency(%q<slop>, ["~> 3.3.1"])
73
75
  s.add_dependency(%q<sqlite3>, ["~> 1.3.4"])
74
76
  s.add_dependency(%q<activerecord-import>, ["~> 0.2.8"])
77
+ s.add_dependency(%q<diff-lcs>, ["~> 1.1.3"])
75
78
  s.add_dependency(%q<rspec>, ["~> 2.3.0"])
76
79
  s.add_dependency(%q<bundler>, ["~> 1.0.0"])
77
80
  s.add_dependency(%q<jeweler>, ["~> 1.6.4"])
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: snp-search
3
3
  version: !ruby/object:Gem::Version
4
- version: 2.0.0
4
+ version: 2.2.0
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -14,7 +14,7 @@ date: 2012-08-02 00:00:00.000000000Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: activerecord
17
- requirement: &2165264520 !ruby/object:Gem::Requirement
17
+ requirement: &2160033340 !ruby/object:Gem::Requirement
18
18
  none: false
19
19
  requirements:
20
20
  - - ~>
@@ -22,10 +22,10 @@ dependencies:
22
22
  version: 3.1.3
23
23
  type: :runtime
24
24
  prerelease: false
25
- version_requirements: *2165264520
25
+ version_requirements: *2160033340
26
26
  - !ruby/object:Gem::Dependency
27
27
  name: bio
28
- requirement: &2165263760 !ruby/object:Gem::Requirement
28
+ requirement: &2160032640 !ruby/object:Gem::Requirement
29
29
  none: false
30
30
  requirements:
31
31
  - - ~>
@@ -33,21 +33,21 @@ dependencies:
33
33
  version: 1.4.2
34
34
  type: :runtime
35
35
  prerelease: false
36
- version_requirements: *2165263760
36
+ version_requirements: *2160032640
37
37
  - !ruby/object:Gem::Dependency
38
38
  name: slop
39
- requirement: &2165262760 !ruby/object:Gem::Requirement
39
+ requirement: &2160031800 !ruby/object:Gem::Requirement
40
40
  none: false
41
41
  requirements:
42
42
  - - ~>
43
43
  - !ruby/object:Gem::Version
44
- version: 2.4.0
44
+ version: 3.3.1
45
45
  type: :runtime
46
46
  prerelease: false
47
- version_requirements: *2165262760
47
+ version_requirements: *2160031800
48
48
  - !ruby/object:Gem::Dependency
49
49
  name: sqlite3
50
- requirement: &2165261900 !ruby/object:Gem::Requirement
50
+ requirement: &2160021660 !ruby/object:Gem::Requirement
51
51
  none: false
52
52
  requirements:
53
53
  - - ~>
@@ -55,10 +55,10 @@ dependencies:
55
55
  version: 1.3.4
56
56
  type: :runtime
57
57
  prerelease: false
58
- version_requirements: *2165261900
58
+ version_requirements: *2160021660
59
59
  - !ruby/object:Gem::Dependency
60
60
  name: activerecord-import
61
- requirement: &2165260720 !ruby/object:Gem::Requirement
61
+ requirement: &2160021080 !ruby/object:Gem::Requirement
62
62
  none: false
63
63
  requirements:
64
64
  - - ~>
@@ -66,10 +66,21 @@ dependencies:
66
66
  version: 0.2.8
67
67
  type: :runtime
68
68
  prerelease: false
69
- version_requirements: *2165260720
69
+ version_requirements: *2160021080
70
+ - !ruby/object:Gem::Dependency
71
+ name: diff-lcs
72
+ requirement: &2160020440 !ruby/object:Gem::Requirement
73
+ none: false
74
+ requirements:
75
+ - - ~>
76
+ - !ruby/object:Gem::Version
77
+ version: 1.1.3
78
+ type: :runtime
79
+ prerelease: false
80
+ version_requirements: *2160020440
70
81
  - !ruby/object:Gem::Dependency
71
82
  name: rspec
72
- requirement: &2165259280 !ruby/object:Gem::Requirement
83
+ requirement: &2160019880 !ruby/object:Gem::Requirement
73
84
  none: false
74
85
  requirements:
75
86
  - - ~>
@@ -77,10 +88,10 @@ dependencies:
77
88
  version: 2.3.0
78
89
  type: :development
79
90
  prerelease: false
80
- version_requirements: *2165259280
91
+ version_requirements: *2160019880
81
92
  - !ruby/object:Gem::Dependency
82
93
  name: bundler
83
- requirement: &2165258160 !ruby/object:Gem::Requirement
94
+ requirement: &2160019340 !ruby/object:Gem::Requirement
84
95
  none: false
85
96
  requirements:
86
97
  - - ~>
@@ -88,10 +99,10 @@ dependencies:
88
99
  version: 1.0.0
89
100
  type: :development
90
101
  prerelease: false
91
- version_requirements: *2165258160
102
+ version_requirements: *2160019340
92
103
  - !ruby/object:Gem::Dependency
93
104
  name: jeweler
94
- requirement: &2165257000 !ruby/object:Gem::Requirement
105
+ requirement: &2160018780 !ruby/object:Gem::Requirement
95
106
  none: false
96
107
  requirements:
97
108
  - - ~>
@@ -99,10 +110,10 @@ dependencies:
99
110
  version: 1.6.4
100
111
  type: :development
101
112
  prerelease: false
102
- version_requirements: *2165257000
113
+ version_requirements: *2160018780
103
114
  - !ruby/object:Gem::Dependency
104
115
  name: rcov
105
- requirement: &2165255880 !ruby/object:Gem::Requirement
116
+ requirement: &2160018240 !ruby/object:Gem::Requirement
106
117
  none: false
107
118
  requirements:
108
119
  - - ! '>='
@@ -110,7 +121,7 @@ dependencies:
110
121
  version: '0'
111
122
  type: :development
112
123
  prerelease: false
113
- version_requirements: *2165255880
124
+ version_requirements: *2160018240
114
125
  description: Use the snp-search tool to create, import, manipulate and query your
115
126
  SNP database
116
127
  email: ali.al-shahib@hpa.org.uk
@@ -153,7 +164,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
153
164
  version: '0'
154
165
  segments:
155
166
  - 0
156
- hash: 1607617824420065040
167
+ hash: -2122266153834504004
157
168
  required_rubygems_version: !ruby/object:Gem::Requirement
158
169
  none: false
159
170
  requirements: