simple_bioc 0.0.12 → 0.0.13

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/simple_bioc/location_adjuster.rb

@@ -1,39 +1,41 @@
-module LocationAdjuster
-  def adjust_annotation_offsets
-    obj = self
-    return if obj.nil?
-    obj.annotations.each do |a|
-      positions = find_all_locations(obj, a.text)
-      a.locations.each do |l|
-        l.offset = choose_offset_candidate(l.offset, positions)
+module SimpleBioC
+  module LocationAdjuster
+    def adjust_annotation_offsets
+      obj = self
+      return if obj.nil?
+      obj.annotations.each do |a|
+        positions = find_all_locations(obj, a.text)
+        a.locations.each do |l|
+          l.offset = choose_offset_candidate(l.offset, positions)
+        end
       end
     end
-  end
-  
-  module_function
+    
+    module_function
 
-  def find_all_locations(obj, text)
-    positions = []
-    return positions if obj.nil? || obj.text.nil?
-    pos = obj.text.index(text)
-    until pos.nil? 
-      positions << (pos + obj.offset)
-      pos = obj.text.index(text, pos + 1)
+    def find_all_locations(obj, text)
+      positions = []
+      return positions if obj.nil? || obj.text.nil?
+      pos = obj.text.index(text)
+      until pos.nil? 
+        positions << (pos + obj.offset)
+        pos = obj.text.index(text, pos + 1)
+      end
+      return positions
     end
-    return positions
-  end
 
-  def choose_offset_candidate(offset, positions)
-    min_diff = 99999
-    offset = offset.to_i
-    ret = offset
-    positions.each do |p|
-      diff = (offset - p).abs
-      if diff < min_diff
-        ret = p 
-        min_diff = diff
+    def choose_offset_candidate(offset, positions)
+      min_diff = 99999
+      offset = offset.to_i
+      ret = offset
+      positions.each do |p|
+        diff = (offset - p).abs
+        if diff < min_diff
+          ret = p 
+          min_diff = diff
+        end
       end
+      return ret
     end
-    return ret
   end
 end

data/lib/simple_bioc/passage.rb

@@ -1,3 +1,4 @@
+require 'simple_bioc/location_adjuster'
 module SimpleBioC
   class Passage
     include LocationAdjuster

data/lib/simple_bioc/sentence.rb

@@ -1,3 +1,4 @@
+require 'simple_bioc/location_adjuster'
 module SimpleBioC
   class Sentence
     include LocationAdjuster

data/lib/simple_bioc/version.rb

@@ -1,3 +1,3 @@
 module SimpleBioC
-  VERSION = "0.0.12"
+  VERSION = "0.0.13"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: simple_bioc
 version: !ruby/object:Gem::Version
-  version: 0.0.12
+  version: 0.0.13
 platform: ruby
 authors:
 - Dongseop Kwon
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-01-24 00:00:00.000000000 Z
+date: 2016-01-28 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: nokogiri