simple_bioc 0.0.1

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Files changed (39) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +18 -0
  3. data/Gemfile +4 -0
  4. data/LICENSE +20 -0
  5. data/LICENSE.txt +22 -0
  6. data/README.md +29 -0
  7. data/Rakefile +8 -0
  8. data/lib/simple_bioc/annotation.rb +11 -0
  9. data/lib/simple_bioc/bioc_reader.rb +102 -0
  10. data/lib/simple_bioc/bioc_writer.rb +93 -0
  11. data/lib/simple_bioc/collection.rb +15 -0
  12. data/lib/simple_bioc/document.rb +29 -0
  13. data/lib/simple_bioc/location.rb +10 -0
  14. data/lib/simple_bioc/node.rb +12 -0
  15. data/lib/simple_bioc/node_base.rb +14 -0
  16. data/lib/simple_bioc/passage.rb +29 -0
  17. data/lib/simple_bioc/relation.rb +14 -0
  18. data/lib/simple_bioc/sentence.rb +20 -0
  19. data/lib/simple_bioc/version.rb +3 -0
  20. data/lib/simple_bioc.rb +14 -0
  21. data/simple_bioc.gemspec +27 -0
  22. data/spec/simple_bioc_spec.rb +14 -0
  23. data/xml/BioC.dtd +146 -0
  24. data/xml/PMID-8557975-simplified-sentences-tokens.xml +492 -0
  25. data/xml/PMID-8557975-simplified-sentences.xml +49 -0
  26. data/xml/abbr.key +71 -0
  27. data/xml/abbr.xml +1 -0
  28. data/xml/ascii.key +29 -0
  29. data/xml/ascii.xml +3 -0
  30. data/xml/everything-sentence.xml +1 -0
  31. data/xml/everything.key +8 -0
  32. data/xml/everything.xml +1 -0
  33. data/xml/lemma.key +51 -0
  34. data/xml/lemma.xml +1 -0
  35. data/xml/pos.key +49 -0
  36. data/xml/pos.xml +1 -0
  37. data/xml/sentence.key +36 -0
  38. data/xml/sentence.xml +1 -0
  39. metadata +153 -0
data/xml/pos.xml ADDED
@@ -0,0 +1 @@
1
+ <?xml version='1.0' encoding='UTF-8'?><!DOCTYPE collection SYSTEM "BioC.dtd"><collection><source>PubMed</source><date>20120606</date><key>pos.key</key><document><id>21951408</id><passage><infon key="type">title</infon><offset>0</offset><sentence><offset>0</offset><annotation><infon key="POS">JJ</infon><location offset="0" length="18"/><text>Constraint-induced</text></annotation><annotation><infon key="POS">NN</infon><location offset="19" length="8"/><text>movement</text></annotation><annotation><infon key="POS">NN</infon><location offset="28" length="7"/><text>therapy</text></annotation><annotation><infon key="POS">IN</infon><location offset="36" length="3"/><text>for</text></annotation><annotation><infon key="POS">DT</infon><location offset="40" length="3"/><text>the</text></annotation><annotation><infon key="POS">JJ</infon><location offset="44" length="5"/><text>upper</text></annotation><annotation><infon key="POS">JJ</infon><location offset="50" 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