shuffle 0.1.0
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- data/LICENSE +20 -0
- data/README.md +1 -0
- data/lib/shuffle.rb +103 -0
- metadata +64 -0
data/LICENSE
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Copyright (c) 2012 Evan Senter
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/README.md
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http://www.youtube.com/watch?v=xFZYJIwfUbo
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data/lib/shuffle.rb
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require "rand"
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class Shuffle
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PREFIXES = {
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"mono" => 1,
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"di" => 2,
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"tri" => 3,
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"quad" => 4
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}
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attr_reader :sequence, :rejoin
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def initialize(sequence)
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@sequence = if sequence.is_a?(String) && sequence !~ /\s/
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@rejoin = true
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sequence.split(//)
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else
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sequence
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end
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end
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def shuffle(size)
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shuffled_sequence = shuffler(size)
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rejoin ? shuffled_sequence.join : shuffled_sequence
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end
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def validate(size)
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frequency(sequence.each_cons(size)) == frequency(shuffler(size).each_cons(size))
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end
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private
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def shuffler(size)
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if size == 1
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sequence.shuffle
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else
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edge_hash = shuffle!(edge_list(size))
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shuffle!(edge_hash) until connected?(last_edge_graph(edge_hash, size), size)
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construct_from(edge_hash, size)
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end
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end
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def start(size)
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sequence[0, size - 1]
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end
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def terminal(size)
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sequence[(-(size - 1))..-1]
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end
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def edge_list(size)
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sequence.each_cons(size).inject(Hash.new { |hash, key| hash[key] = [] }) do |hash, subsequence|
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hash.tap { hash[subsequence[0..-2]] << subsequence }
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end
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end
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def shuffle!(edge_hash)
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edge_hash.tap { edge_hash.values.map(&:shuffle!) }
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end
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def last_edge_graph(edge_hash, size)
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edge_hash.reject { |token, edges| token == terminal(size) }.values.map(&:last)
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end
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def connected?(edges, size)
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terminal = terminal(size)
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vertex_terminates = edges.map { |edge| edge[0..-2] }.inject({}) { |hash, v| hash.tap { hash[v] = false } }
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queue = edges.select { |edge| edge[1..-1] == terminal }
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until queue.empty?
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edge = queue.pop
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if vertex_terminates[edge[0..-2]] = vertex_terminates[edge[1..-1]] || edge[1..-1] == terminal
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queue.push(*edges.select { |queueable_edge| queueable_edge[1..-1] == edge[0..-2] })
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end
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end
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vertex_terminates.values.all?
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end
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def construct_from(edge_hash, size)
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shuffled_sequence = edge_hash[start(size)].shift
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until edge_hash.values.flatten.empty?
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shuffled_sequence.concat(edge_hash[shuffled_sequence[-(size - 1)..-1]].shift[-1, 1])
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end
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shuffled_sequence
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end
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def frequency(array)
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array.inject(Hash.new { |hash, key| hash[key] = 0 }) { |hash, token| hash.tap { hash[token] += 1 } }
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end
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def method_missing(name, *args, &block)
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if size = PREFIXES[name.to_s.match(/^(\w+)shuffle$/)[1]]
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shuffle(size.to_i)
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else
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super
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end
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end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: shuffle
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version: !ruby/object:Gem::Version
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version: 0.1.0
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prerelease:
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platform: ruby
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authors:
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- Evan Senter
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2012-08-15 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rand
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: 0.9.1
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: 0.9.1
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description: Simple method to shuffle list while preserving n-mer frequency.
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email: evansenter@gmail.com
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executables: []
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extensions: []
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extra_rdoc_files: []
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files:
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- lib/shuffle.rb
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- LICENSE
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- README.md
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homepage: http://rubygems.org/gems/shuffle
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licenses: []
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 1.8.24
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signing_key:
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specification_version: 3
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summary: n-mer shuffling.
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test_files: []
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has_rdoc:
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