server_scripts 0.0.1 → 0.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 7fc3282ab4ef93f7e6de815343bca4bf11b6fb60
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data.tar.gz: e9b5a827cda61da04b79f1526df3ed223b593bca
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 7a9d9cd9fd246095acc03507e37e7419da713ff0bad625dbb46582a6cc09f7e5d58a775b07f09cf3d7b72301233ddb338449c366a44946b68e0cf86f301c3ff1
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data.tar.gz: 1c29990c502b25014a60feb44bb1d9e23e12be06b74c7e6663634ddd9a93572bc30bc94a35fa12f83acd616ce5572f9d83c0b275df636819f82acb96ab6a31d5
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data/lib/server_scripts.rb
CHANGED
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@@ -45,10 +45,10 @@ module ServerScripts
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attr_reader :system
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def initialize job_fname
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@job_fname =
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@job_fname = job_fname
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@job_name = "sample"
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@out_file = "sample_out"
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@err_file = "sample_err"
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@out_file = "sample_out.log"
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@err_file = "sample_err.log"
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@wall_time = "1:00:00"
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@node_type = NodeType::FULL
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@nodes = 1
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@@ -58,7 +58,7 @@ module ServerScripts
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@executor = :vanilla
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@env = {}
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@executable = "./a.out"
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@job_script =
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@job_script = nil
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@enable_intel_itac = false
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@additional_commands = []
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@@ -70,27 +70,32 @@ module ServerScripts
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@env[var] = value
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end
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def write_job_script!
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generate_job_script! unless @job_script
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File.write(@job_fname, @job_script)
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end
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def submit!
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write_job_script!
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exec @system.job_submit_cmd(batch_script: @job_fname)
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end
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private
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def generate_job_script!
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@system = ServerScripts.system.new(@node_type, @nodes, @job_name,
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@wall_time, @out_file, @err_file, @env)
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configure_executor!
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@job_script = ""
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@job_script += @system.header
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@job_script += @system.env_setter
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@additional_commands.each do |c|
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@job_script += c + "\n"
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end
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-
@job_script += "#{@executor.run_cmd} #{@executable} #{@options}"
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@job_script += "#{@executor.run_cmd} #{@executable} #{@options}\n"
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end
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def submit!
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generate_job_script! unless @job_script
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File.write(@job_fname, @job_script)
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# system(@system.job_submit_cmd(batch_script: @job_fname))
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end
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-
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private
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-
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def configure_executor!
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check_process_counts
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@nprocs = @npernode * @nodes
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@@ -7,8 +7,8 @@ module ServerScripts
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#$ -l %{node_type}=%{nodes}
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#$ -l h_rt=%{wall_time}
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#$ -N %{job_name}
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#$ -o %{out_file}
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#$ -e %{err_file}
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#$ -o %{out_file}
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#$ -e %{err_file}
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}
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FULL_NODE = "f_node"
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@@ -27,9 +27,9 @@ module ServerScripts
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str
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end
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def job_submit_cmd res_id: nil
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def job_submit_cmd batch_script:, res_id: nil
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res = res_id ? " -ar #{res_id} " : ""
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"qsub -g #{
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"qsub -g #{ServerScripts.group_name} #{res} #{batch_script}"
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end
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end
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end
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