serrano 0.6.0 → 1.4
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- checksums.yaml +4 -4
- data/.github/dependabot.yml +22 -0
- data/.github/workflows/ruby.yml +30 -0
- data/.gitignore +1 -1
- data/CHANGELOG.md +14 -0
- data/Gemfile +1 -1
- data/LICENSE +1 -1
- data/README.md +11 -9
- data/Rakefile +22 -20
- data/lib/serrano/cn.rb +4 -4
- data/lib/serrano/cnrequest.rb +34 -48
- data/lib/serrano/faraday.rb +55 -53
- data/lib/serrano/filterhandler.rb +22 -22
- data/lib/serrano/filters.rb +67 -67
- data/lib/serrano/request.rb +29 -32
- data/lib/serrano/request_cursor.rb +48 -52
- data/lib/serrano/styles.rb +17 -17
- data/lib/serrano/utils.rb +8 -9
- data/lib/serrano/version.rb +1 -1
- data/lib/serrano.rb +69 -73
- data/serrano.gemspec +34 -33
- metadata +76 -75
- data/.rubocop.yml +0 -30
- data/.rubocop_todo.yml +0 -105
- data/.travis.yml +0 -11
- data/Gemfile.lock +0 -82
data/lib/serrano/filters.rb
CHANGED
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@@ -28,73 +28,73 @@ module Serrano
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end
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FILTER_DETAILS = {
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+
"has_funder" => {"possible_values" => nil, "description" => "metadata which includes one or more funder entry"},
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+
"funder" => {"possible_values" => "{funder_id}", "description" => "metadata which include the {funder_id} in FundRef data"},
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+
"location" => {"possible_values" => "{country_name}", "description" => "funder records where location = {country name}. Only works on /funders route"},
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"prefix" => {"possible_values" => "{owner_prefix}", "description" => "metadata belonging to a DOI owner prefix {owner_prefix} (e.g. '10.1016' )"},
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"member" => {"possible_values" => "{member_id}", "description" => "metadata belonging to a CrossRef member"},
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"from_index_date" => {"possible_values" => "{date}", "description" => "metadata indexed since (inclusive) {date}"},
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"until_index_date" => {"possible_values" => "{date}", "description" => "metadata indexed before (inclusive) {date}"},
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"from_deposit_date" => {"possible_values" => "{date}", "description" => "metadata last (re)deposited since (inclusive) {date}"},
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"until_deposit_date" => {"possible_values" => "{date}", "description" => "metadata last (re)deposited before (inclusive) {date}"},
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"from_update_date" => {"possible_values" => "{date}", "description" => "Metadata updated since (inclusive) {date} Currently the same as 'from_deposit_date'"},
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"until_update_date" => {"possible_values" => "{date}", "description" => "Metadata updated before (inclusive) {date} Currently the same as 'until_deposit_date'"},
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"from_created_date" => {"possible_values" => "{date}", "description" => "metadata first deposited since (inclusive) {date}"},
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"until_created_date" => {"possible_values" => "{date}", "description" => "metadata first deposited before (inclusive) {date}"},
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"from_pub_date" => {"possible_values" => "{date}", "description" => "metadata where published date is since (inclusive) {date}"},
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"until_pub_date" => {"possible_values" => "{date}", "description" => "metadata where published date is before (inclusive) {date}"},
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"from_online_pub_date" => {"possible_values" => "{date}", "description" => "metadata where online published date is since (inclusive) {date}"},
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"until_online_pub_date" => {"possible_values" => "{date}", "description" => "metadata where online published date is before (inclusive) {date}"},
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"from_print_pub_date" => {"possible_values" => "{date}", "description" => "metadata where print published date is since (inclusive) {date}"},
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"until_print_pub_date" => {"possible_values" => "{date}", "description" => "metadata where print published date is before (inclusive) {date}"},
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"from_posted_date" => {"possible_values" => "{date}", "description" => "metadata where posted date is since (inclusive) {date}"},
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"until_posted_date" => {"possible_values" => "{date}", "description" => "metadata where posted date is before (inclusive) {date}"},
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"from_accepted_date" => {"possible_values" => "{date}", "description" => "metadata where accepted date is since (inclusive) {date}"},
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"until_accepted_date" => {"possible_values" => "{date}", "description" => "metadata where accepted date is before (inclusive) {date}"},
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"has_license" => {"possible_values" => nil, "description" => "metadata that includes any '<license_ref>' elements"},
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"license_url" => {"possible_values" => "{url}", "description" => "metadata where '<license_ref>' value equals {url}"},
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"license_version" => {"possible_values" => "{string}", "description" => "metadata where the '<license_ref>''s 'applies_to' attribute is '{string}'"},
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"license_delay" => {"possible_values" => "{integer}", "description" => "metadata where difference between publication date and the '<license_ref>''s 'start_date' attribute is <= '{integer}' (in days"},
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+
"has_full_text" => {"possible_values" => nil, "description" => "metadata that includes any full text '<resource>' elements_"},
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"full_text_version" => {"possible_values" => "{string}", "description" => "metadata where '<resource>' element's 'content_version' attribute is '{string}'"},
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"full_text_type" => {"possible_values" => "{mime_type}", "description" => "metadata where '<resource>' element's 'content_type' attribute is '{mime_type}' (e.g. 'application/pdf')"},
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"full_text_application" => {"possible_values" => "{string}", "description" => "metadata where <resource> link has one of the following intended applications: text-mining, similarity-checking or unspecified"},
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"has_references" => {"possible_values" => nil, "description" => "metadata for works that have a list of references"},
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"has_archive" => {"possible_values" => nil, "description" => "metadata which include name of archive partner"},
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"archive" => {"possible_values" => "{string}", "description" => "metadata which where value of archive partner is '{string}'"},
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"has_orcid" => {"possible_values" => nil, "description" => "metadata which includes one or more ORCIDs"},
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"has_authenticated_orcid" => {"possible_values" => nil, "description" => "metadata which includes one or more ORCIDs where the depositing publisher claims to have witness the ORCID owner authenticate with ORCID"},
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"orcid" => {"possible_values" => "{orcid}", "description" => "metadata where '<orcid>' element's value = '{orcid}'"},
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"issn" => {"possible_values" => "{issn}", "description" => "metadata where record has an ISSN = '{issn}' Format is 'xxxx_xxxx'."},
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"directory" => {"possible_values" => "{directory}", "description" => "metadata records whose article or serial are mentioned in the given '{directory}'. Currently the only supported value is 'doaj'"},
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"doi" => {"possible_values" => "{doi}", "description" => "metadata describing the DOI '{doi}'"},
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"updates" => {"possible_values" => "{doi}", "description" => "metadata for records that represent editorial updates to the DOI '{doi}'"},
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"is_update" => {"possible_values" => nil, "description" => "metadata for records that represent editorial updates"},
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"has_update_policy" => {"possible_values" => nil, "description" => "metadata for records that include a link to an editorial update policy"},
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"container_title" => {"possible_values" => nil, "description" => "metadata for records with a publication title exactly with an exact match"},
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"category_name" => {"possible_values" => nil, "description" => "metadata for records with an exact matching category label"},
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"type" => {"possible_values" => "{type}", "description" => "metadata records whose type = '{type}' Type must be an ID value from the list of types returned by the '/types' resource"},
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"type_name" => {"possible_values" => nil, "description" => "metadata for records with an exacty matching type label"},
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"award_number" => {"possible_values" => "{award_number}", "description" => "metadata for records with a matching award nunber_ Optionally combine with 'award_funder'"},
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"award_funder" => {"possible_values" => "{funder doi or id}", "description" => "metadata for records with an award with matching funder. Optionally combine with 'award_number'"},
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"has_assertion" => {"possible_values" => nil, "description" => "metadata for records with any assertions"},
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"assertion_group" => {"possible_values" => nil, "description" => "metadata for records with an assertion in a particular group"},
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"assertion" => {"possible_values" => nil, "description" => "metadata for records with a particular named assertion"},
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"has_affiliation" => {"possible_values" => nil, "description" => "metadata for records that have any affiliation information"},
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"alternative_id" => {"possible_values" => nil, "description" => "metadata for records with the given alternative ID, which may be a publisher_specific ID, or any other identifier a publisher may have provided"},
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"article_number" => {"possible_values" => nil, "description" => "metadata for records with a given article number"},
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"has_abstract" => {"possible_values" => nil, "description" => "metadata for records which include an abstract"},
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"has_clinical_trial_number" => {"possible_values" => nil, "description" => "metadata for records which include a clinical trial number"},
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"content_domain" => {"possible_values" => nil, "description" => "metadata where the publisher records a particular domain name as the location Crossmark content will appear"},
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"has_content_domain" => {"possible_values" => nil, "description" => "metadata where the publisher records a domain name location for Crossmark content"},
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"has_crossmark_restriction" => {"possible_values" => nil, "description" => "metadata where the publisher restricts Crossmark usage to content domains"},
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"has_relation" => {"possible_values" => nil, "description" => "metadata for records that either assert or are the object of a relation"},
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"relation_type" => {"possible_values" => nil, "description" => "One of the relation types from the Crossref relations schema (e.g. is-referenced-by, is-parent-of, is-preprint-of)"},
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"relation_object" => {"possible_values" => nil, "description" => "Relations where the object identifier matches the identifier provided"},
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"relation_object_type" => {"possible_values" => nil, "description" => "One of the identifier types from the Crossref relations schema (e.g. doi, issn)"},
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"public_references" => {"possible_values" => nil, "description" => "metadata where publishers allow references to be distributed publically"},
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"publisher_name" => {"possible_values" => nil, "description" => "metadata for records with an exact matching publisher name"},
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"affiliation" => {"possible_values" => nil, "description" => "metadata for records with at least one contributor with the given affiliation"}
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}.freeze
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end
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end
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data/lib/serrano/request.rb
CHANGED
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@@ -1,18 +1,18 @@
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# frozen_string_literal: true
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require
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require
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require
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require
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require
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require
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require "erb"
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require "faraday"
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require "multi_json"
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require "serrano/error"
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require "serrano/utils"
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require "serrano/helpers/configuration"
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##
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# Serrano::Request
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#
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# Class to perform HTTP requests to the Crossref API
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module Serrano
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-
class Request
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class Request # :nodoc:
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attr_accessor :endpt
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attr_accessor :id
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attr_accessor :query
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@@ -30,8 +30,8 @@ module Serrano
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attr_accessor :verbose
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def initialize(endpt, id, query, filter, offset,
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limit, sample, sort, order, facet, select,
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works, agency, options, verbose)
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self.endpt = endpt
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self.id = id
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@@ -53,29 +53,26 @@ module Serrano
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def perform
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filt = filter_handler(filter)
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-
self.select = select.join(
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+
self.select = select&.instance_of?(Array) ? select.join(",") : select
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-
args = {
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-
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select: select }
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args = {query: query, filter: filt, offset: offset, rows: limit,
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sample: sample, sort: sort, order: order, facet: facet,
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select: select}
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62
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opts = args.delete_if { |_k, v| v.nil? }
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conn = if verbose
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-
end
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-
end
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+
Faraday.new(url: Serrano.base_url, request: options || {}) do |f|
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f.response :logger
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+
f.use Faraday::SerranoErrors::Middleware
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+
end
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else
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Faraday.new(url: Serrano.base_url, request: options || {}) do |f|
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f.use Faraday::SerranoErrors::Middleware
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end
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end
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conn.headers[:user_agent] = make_ua
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-
conn.headers[
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conn.headers["X-USER-AGENT"] = make_ua
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if id.nil?
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res = conn.get endpt, opts
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@@ -87,12 +84,12 @@ module Serrano
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coll = []
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id.each do |x|
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endpt = if works
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-
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-
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self.endpt + "/" + x.to_s + "/works"
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elsif agency
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self.endpt + "/" + x.to_s + "/agency"
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else
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self.endpt + "/" + x.to_s
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end
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97
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res = conn.get endpt, opts
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coll << MultiJson.load(res.body)
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@@ -1,22 +1,20 @@
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# frozen_string_literal: true
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require
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require
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require
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require
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require
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require
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require
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require
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require 'serrano/faraday'
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-
require 'serrano/utils'
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require "erb"
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4
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require "faraday"
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5
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require "multi_json"
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6
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require "serrano/error"
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7
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require "serrano/helpers/configuration"
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8
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require "serrano/filterhandler"
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9
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require "serrano/faraday"
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10
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require "serrano/utils"
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13
11
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14
12
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##
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15
13
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# Serrano::RequestCursor
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16
14
|
#
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17
15
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# Class to perform HTTP requests to the Crossref API
|
|
18
16
|
module Serrano
|
|
19
|
-
class RequestCursor
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17
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+
class RequestCursor # :nodoc:
|
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20
18
|
attr_accessor :endpt
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21
19
|
attr_accessor :id
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22
20
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attr_accessor :query
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|
@@ -37,9 +35,9 @@ module Serrano
|
|
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37
35
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attr_accessor :args
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38
36
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39
37
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def initialize(endpt, id, query, filter, offset,
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40
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-
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41
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-
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42
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-
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38
|
+
limit, sample, sort, order, facet, select,
|
|
39
|
+
works, agency, options, verbose, cursor,
|
|
40
|
+
cursor_max, args)
|
|
43
41
|
|
|
44
42
|
self.endpt = endpt
|
|
45
43
|
self.id = id
|
|
@@ -64,42 +62,40 @@ module Serrano
|
|
|
64
62
|
def perform
|
|
65
63
|
filt = filter_handler(filter)
|
|
66
64
|
fieldqueries = field_query_handler(args)
|
|
67
|
-
self.select = select.join(
|
|
65
|
+
self.select = select&.instance_of?(Array) ? select.join(",") : select
|
|
68
66
|
|
|
69
67
|
unless cursor_max.class.nil?
|
|
70
|
-
raise
|
|
68
|
+
raise "cursor_max must be of class int" unless cursor_max.is_a?(Integer)
|
|
71
69
|
end
|
|
72
70
|
|
|
73
|
-
arguments = {
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
|
|
71
|
+
arguments = {query: query, filter: filt, offset: offset,
|
|
72
|
+
rows: limit, sample: sample, sort: sort,
|
|
73
|
+
order: order, facet: facet, select: select,
|
|
74
|
+
cursor: cursor}.tostrings
|
|
77
75
|
arguments = arguments.merge(fieldqueries)
|
|
78
76
|
opts = arguments.delete_if { |_k, v| v.nil? }
|
|
79
77
|
|
|
80
78
|
conn = if verbose
|
|
81
|
-
|
|
82
|
-
|
|
83
|
-
|
|
84
|
-
|
|
85
|
-
|
|
86
|
-
|
|
87
|
-
|
|
88
|
-
|
|
89
|
-
|
|
90
|
-
end
|
|
91
|
-
end
|
|
79
|
+
Faraday.new(url: Serrano.base_url, request: options || {}) do |f|
|
|
80
|
+
f.response :logger
|
|
81
|
+
f.use Faraday::SerranoErrors::Middleware
|
|
82
|
+
end
|
|
83
|
+
else
|
|
84
|
+
Faraday.new(url: Serrano.base_url, request: options || {}) do |f|
|
|
85
|
+
f.use Faraday::SerranoErrors::Middleware
|
|
86
|
+
end
|
|
87
|
+
end
|
|
92
88
|
|
|
93
89
|
conn.headers[:user_agent] = make_ua
|
|
94
|
-
conn.headers[
|
|
90
|
+
conn.headers["X-USER-AGENT"] = make_ua
|
|
95
91
|
|
|
96
92
|
if id.nil?
|
|
97
93
|
endpt2 = endpt
|
|
98
94
|
js = _req(conn, endpt, opts)
|
|
99
|
-
cu = js[
|
|
100
|
-
max_avail = js[
|
|
101
|
-
|
|
102
|
-
|
|
95
|
+
cu = js["message"]["next-cursor"]
|
|
96
|
+
max_avail = js["message"]["total-results"]
|
|
97
|
+
_redo_req(conn, js, opts, cu, max_avail, endpt2)
|
|
98
|
+
|
|
103
99
|
else
|
|
104
100
|
self.id = Array(id)
|
|
105
101
|
# url encoding
|
|
@@ -107,34 +103,34 @@ module Serrano
|
|
|
107
103
|
coll = []
|
|
108
104
|
id.each do |x|
|
|
109
105
|
endpt2 = if works
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
|
|
114
|
-
|
|
115
|
-
|
|
116
|
-
|
|
117
|
-
|
|
106
|
+
endpt + "/" + x.to_s + "/works"
|
|
107
|
+
else
|
|
108
|
+
endpt2 = if agency
|
|
109
|
+
endpt + "/" + x.to_s + "/agency"
|
|
110
|
+
else
|
|
111
|
+
endpt + "/" + x.to_s
|
|
112
|
+
end
|
|
113
|
+
end
|
|
118
114
|
|
|
119
115
|
js = _req(conn, endpt2, opts)
|
|
120
|
-
cu = js[
|
|
121
|
-
max_avail = js[
|
|
122
|
-
coll << _redo_req(conn, js, opts, cu, max_avail)
|
|
116
|
+
cu = js["message"]["next-cursor"]
|
|
117
|
+
max_avail = js["message"]["total-results"]
|
|
118
|
+
coll << _redo_req(conn, js, opts, cu, max_avail, endpt2)
|
|
123
119
|
end
|
|
124
120
|
coll
|
|
125
121
|
end
|
|
126
122
|
end
|
|
127
123
|
|
|
128
|
-
def _redo_req(conn, js, opts, cu, max_avail)
|
|
129
|
-
if !cu.nil? && (cursor_max > js[
|
|
124
|
+
def _redo_req(conn, js, opts, cu, max_avail, endpt2)
|
|
125
|
+
if !cu.nil? && (cursor_max > js["message"]["items"].length)
|
|
130
126
|
res = [js]
|
|
131
|
-
total = js[
|
|
127
|
+
total = js["message"]["items"].length
|
|
132
128
|
while !cu.nil? && (cursor_max > total) && (total < max_avail)
|
|
133
129
|
opts[:cursor] = cu
|
|
134
130
|
out = _req(conn, endpt2, opts)
|
|
135
|
-
cu = out[
|
|
131
|
+
cu = out["message"]["next-cursor"]
|
|
136
132
|
res << out
|
|
137
|
-
total = res.collect { |x| x[
|
|
133
|
+
total = res.collect { |x| x["message"]["items"].length }.sum
|
|
138
134
|
end
|
|
139
135
|
res
|
|
140
136
|
else
|
data/lib/serrano/styles.rb
CHANGED
|
@@ -1,28 +1,28 @@
|
|
|
1
1
|
# frozen_string_literal: true
|
|
2
2
|
|
|
3
|
-
require
|
|
4
|
-
require
|
|
3
|
+
require "faraday"
|
|
4
|
+
require "multi_json"
|
|
5
5
|
|
|
6
6
|
def fetch_styles
|
|
7
|
-
base =
|
|
8
|
-
conn = Faraday.new(url: base)
|
|
9
|
-
f.use
|
|
10
|
-
f.adapter Faraday.default_adapter
|
|
11
|
-
|
|
12
|
-
args = {
|
|
13
|
-
tt = conn.get
|
|
7
|
+
base = "https://api.github.com/repos/citation-style-language/styles"
|
|
8
|
+
conn = Faraday.new(url: base) { |f|
|
|
9
|
+
f.use Faraday::Response::RaiseError
|
|
10
|
+
# f.adapter Faraday.default_adapter
|
|
11
|
+
}
|
|
12
|
+
args = {per_page: 1}
|
|
13
|
+
tt = conn.get "commits", args
|
|
14
14
|
commres = MultiJson.load(tt.body)
|
|
15
|
-
sha = commres[0][
|
|
16
|
-
sty = conn.get
|
|
15
|
+
sha = commres[0]["sha"]
|
|
16
|
+
sty = conn.get "git/trees/" + sha
|
|
17
17
|
res = MultiJson.load(sty.body)
|
|
18
|
-
files = res[
|
|
19
|
-
matches = files.collect
|
|
20
|
-
if x.match(
|
|
18
|
+
files = res["tree"].collect { |x| x["path"] }
|
|
19
|
+
matches = files.collect { |x|
|
|
20
|
+
if x.match("csl").nil?
|
|
21
21
|
nil
|
|
22
22
|
else
|
|
23
|
-
x.match(
|
|
23
|
+
x.match("csl").string
|
|
24
24
|
end
|
|
25
|
-
|
|
25
|
+
}
|
|
26
26
|
csls = matches.compact
|
|
27
|
-
csls.collect { |z| z.gsub(
|
|
27
|
+
csls.collect { |z| z.gsub(".csl", "") }
|
|
28
28
|
end
|
data/lib/serrano/utils.rb
CHANGED
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
# frozen_string_literal: true
|
|
2
2
|
|
|
3
3
|
def make_ua
|
|
4
|
-
requa =
|
|
5
|
-
habua =
|
|
6
|
-
ua = requa +
|
|
4
|
+
requa = "Faraday/v" + Faraday::VERSION
|
|
5
|
+
habua = "Serrano/v" + Serrano::VERSION
|
|
6
|
+
ua = requa + " " + habua
|
|
7
7
|
if Serrano.mailto
|
|
8
|
-
ua
|
|
8
|
+
ua += " (mailto:%s)" % Serrano.mailto
|
|
9
9
|
end
|
|
10
10
|
# ua += format(' (mailto:%s)', Serrano.mailto) if Serrano.mailto
|
|
11
11
|
ua
|
|
@@ -18,19 +18,18 @@ end
|
|
|
18
18
|
|
|
19
19
|
def rename_query_filters(foo)
|
|
20
20
|
foo = foo.tostrings
|
|
21
|
-
foo = foo.map { |x, y| [x.to_s.sub(
|
|
22
|
-
foo
|
|
23
|
-
foo
|
|
21
|
+
foo = foo.map { |x, y| [x.to_s.sub("container_title", "container-title"), y] }.to_h
|
|
22
|
+
foo.map { |x, y| [x.to_s.sub("query_", "query."), y] }.to_h
|
|
24
23
|
end
|
|
25
24
|
|
|
26
25
|
class Hash
|
|
27
26
|
def tostrings
|
|
28
|
-
|
|
27
|
+
map { |(k, v)| [k.to_s, v] }.to_h
|
|
29
28
|
end
|
|
30
29
|
end
|
|
31
30
|
|
|
32
31
|
class Hash
|
|
33
32
|
def tosymbols
|
|
34
|
-
|
|
33
|
+
map { |(k, v)| [k.to_sym, v] }.to_h
|
|
35
34
|
end
|
|
36
35
|
end
|
data/lib/serrano/version.rb
CHANGED