sequenceserver 2.0.0.rc3 → 2.0.0.rc4

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Files changed (17) hide show
  1. checksums.yaml +4 -4
  2. data/.dockerignore +1 -0
  3. data/Dockerfile +14 -12
  4. data/lib/sequenceserver.rb +20 -2
  5. data/lib/sequenceserver/database.rb +8 -0
  6. data/lib/sequenceserver/version.rb +1 -1
  7. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +10 -10
  8. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +10 -10
  9. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +10 -10
  10. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +10 -10
  11. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +10 -10
  12. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +10 -10
  13. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +10 -10
  14. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +10 -10
  15. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +10 -10
  16. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +4 -4
  17. metadata +3 -2
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@@ -1,7 +1,7 @@
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5
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data/.dockerignore ADDED
@@ -0,0 +1 @@
1
+ _site
data/Dockerfile CHANGED
@@ -1,23 +1,25 @@
1
- FROM debian:stretch-backports
1
+ FROM debian:buster-slim
2
2
 
3
3
  LABEL Description="Intuitive local web frontend for the BLAST bioinformatics tool"
4
4
  LABEL MailingList="https://groups.google.com/forum/#!forum/sequenceserver"
5
5
  LABEL Website="http://www.sequenceserver.com"
6
- LABEL Version="1.1.0 beta"
7
6
 
8
- RUN apt-get update && apt-get install -y --no-install-recommends \
9
- build-essential \
10
- ruby ruby-dev \
11
- curl wget \
12
- gnupg \
13
- git \
14
- zlib1g-dev
7
+ RUN apt-get update && apt-get install -y --no-install-recommends \
8
+ ruby ruby-dev build-essential curl gnupg git wget \
9
+ zlib1g-dev && rm -rf /var/lib/apt/lists/*
15
10
 
16
11
  VOLUME ["/db"]
17
12
  EXPOSE 4567
18
13
 
19
14
  COPY . /sequenceserver
20
15
  WORKDIR /sequenceserver
21
- RUN gem install bundler && bundle install --without=development
22
- RUN yes '' | bundle exec bin/sequenceserver -s
23
- ENTRYPOINT ["bundle", "exec", "bin/sequenceserver", "-d", "/db"]
16
+ # Install bundler, then use bundler to install SequenceServer's dependencies,
17
+ # and then use SequenceServer to install BLAST. In the last step, -s is used
18
+ # so that SequenceServer will exit after writing configuration file instead
19
+ # of starting up, while -d is used to suppress questions about database dir.
20
+ RUN gem install bundler && \
21
+ bundle install --without=development && \
22
+ yes '' | bundle exec bin/sequenceserver -s -d spec/database/sample
23
+ RUN touch ~/.sequenceserver/asked_to_join
24
+
25
+ CMD ["bundle", "exec", "bin/sequenceserver", "-d", "/db"]
data/lib/sequenceserver.rb CHANGED
@@ -4,8 +4,12 @@ require 'resolv'
4
4
 
5
5
  # Top level module / namespace.
6
6
  module SequenceServer
7
- # Use a fixed minimum version of BLAST+
7
+ # The default version of BLAST that will be downloaded and configured for use.
8
8
  BLAST_VERSION = '2.10.0+'.freeze
9
+ # The minimum version of BLAST that SequenceServer is happy to run with. This
10
+ # is for compatiblity with older database formats. Users will download BLAST
11
+ # themselves.
12
+ MIN_BLAST_VERSION = '2.9.0+'.freeze
9
13
 
10
14
  # Default location of configuration file.
11
15
  DEFAULT_CONFIG_FILE = '~/.sequenceserver.conf'.freeze
@@ -234,7 +238,7 @@ module SequenceServer
234
238
  end
235
239
  version = out.split[1]
236
240
  fail BLAST_NOT_INSTALLED_OR_NOT_EXECUTABLE if version.empty?
237
- fail BLAST_NOT_COMPATIBLE, version unless version == BLAST_VERSION
241
+ fail BLAST_NOT_COMPATIBLE, version unless is_compatible(version, MIN_BLAST_VERSION)
238
242
  end
239
243
 
240
244
  def server_url
@@ -285,5 +289,19 @@ module SequenceServer
285
289
  def command?(command)
286
290
  system("which #{command} > /dev/null 2>&1")
287
291
  end
292
+
293
+ # Returns true if the given version is higher than the minimum expected
294
+ # version string.
295
+ def is_compatible(given, expected)
296
+ # The speceship operator (<=>) below returns -1, 0, 1 depending on
297
+ # on whether the left operand is lower, same, or higher than the
298
+ # right operand. We want the left operand to be the same or higher.
299
+ (parse_version(given) <=> parse_version(expected)) >= 0
300
+ end
301
+
302
+ # Turn version string into an arrary of its component numbers.
303
+ def parse_version(version_string)
304
+ version_string.split('.').map(&:to_i)
305
+ end
288
306
  end
289
307
  end
data/lib/sequenceserver/database.rb CHANGED
@@ -251,6 +251,14 @@ module SequenceServer
251
251
  " -taxid #{taxid}"
252
252
  out, err = sys(cmd, path: config[:bin])
253
253
  puts out, err unless quiet
254
+ rescue CommandFailed => e
255
+ puts <<~MSG
256
+ Could not create BLAST database for: #{file}
257
+ Tried: #{cmd}
258
+ stdout: #{e.stdout}
259
+ stderr: #{e.stderr}
260
+ MSG
261
+ exit!
254
262
  end
255
263
 
256
264
  # Show file path and guessed sequence type to the user and obtain a y/n
data/lib/sequenceserver/version.rb CHANGED
@@ -1,4 +1,4 @@
1
1
  # Define version number.
2
2
  module SequenceServer
3
- VERSION = '2.0.0.rc3'.freeze
3
+ VERSION = '2.0.0.rc4'.freeze
4
4
  end
data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb CHANGED
@@ -82,7 +82,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
82
82
  # download of PNG/SVG file and test that it initiated a file download in a
83
83
  # right format.
84
84
  page.should have_content('Queries and their top hits: chord diagram')
85
- page.execute_script("$('.circos > .grapher-header > h5').click()")
85
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
86
86
  sleep 1
87
87
 
88
88
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -102,7 +102,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
102
102
  # click on the download of PNG/SVG file and test that it initiated a file
103
103
  # download in a right format.
104
104
  page.should have_content('Length distribution of hits')
105
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
105
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
106
106
  sleep 1
107
107
 
108
108
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -193,7 +193,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
193
193
  # right format.
194
194
 
195
195
  page.should have_content('Queries and their top hits: chord diagram')
196
- page.execute_script("$('.circos > .grapher-header > h5').click()")
196
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
197
197
  sleep 1
198
198
 
199
199
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -213,7 +213,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
213
213
  # download in a right format.
214
214
 
215
215
  page.should have_content('Length distribution of hits')
216
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
216
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
217
217
  sleep 1
218
218
 
219
219
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -307,7 +307,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
307
307
  # right format.
308
308
 
309
309
  page.should have_content('Queries and their top hits: chord diagram')
310
- page.execute_script("$('.circos > .grapher-header > h5').click()")
310
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
311
311
  sleep 1
312
312
 
313
313
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -327,7 +327,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
327
327
  # download in a right format.
328
328
 
329
329
  page.should have_content('Length distribution of hits')
330
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
330
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
331
331
  sleep 1
332
332
 
333
333
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -422,7 +422,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
422
422
  # right format.
423
423
 
424
424
  page.should have_content('Queries and their top hits: chord diagram')
425
- page.execute_script("$('.circos > .grapher-header > h5').click()")
425
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
426
426
  sleep 1
427
427
 
428
428
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -443,7 +443,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
443
443
  # download in a right format.
444
444
 
445
445
  page.should have_content('Length distribution of hits')
446
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
446
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
447
447
  sleep 1
448
448
 
449
449
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -537,7 +537,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
537
537
  # right format.
538
538
 
539
539
  page.should have_content('Queries and their top hits: chord diagram')
540
- page.execute_script("$('.circos > .grapher-header > h5').click()")
540
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
541
541
  sleep 1
542
542
 
543
543
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -558,7 +558,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
558
558
  # download in a right format.
559
559
 
560
560
  page.should have_content('Length distribution of hits')
561
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
561
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
562
562
  sleep 1
563
563
 
564
564
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb CHANGED
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
85
85
  # right format.
86
86
 
87
87
  page.should have_content('Queries and their top hits: chord diagram')
88
- page.execute_script("$('.circos > .grapher-header > h5').click()")
88
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
89
89
  sleep 1
90
90
 
91
91
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
107
107
  # download in a right format.
108
108
 
109
109
  page.should have_content('Length distribution of hits')
110
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
110
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
111
111
  sleep 1
112
112
 
113
113
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
201
201
  # right format.
202
202
 
203
203
  page.should have_content('Queries and their top hits: chord diagram')
204
- page.execute_script("$('.circos > .grapher-header > h5').click()")
204
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
205
205
  sleep 1
206
206
 
207
207
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
221
221
  # download in a right format.
222
222
 
223
223
  page.should have_content('Length distribution of hits')
224
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
224
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
225
225
  sleep 1
226
226
 
227
227
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
315
315
  # right format.
316
316
 
317
317
  page.should have_content('Queries and their top hits: chord diagram')
318
- page.execute_script("$('.circos > .grapher-header > h5').click()")
318
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
319
319
  sleep 1
320
320
 
321
321
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
335
335
  # download in a right format.
336
336
 
337
337
  page.should have_content('Length distribution of hits')
338
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
338
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
339
339
  sleep 1
340
340
 
341
341
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
426
426
  # right format.
427
427
 
428
428
  page.should have_content('Queries and their top hits: chord diagram')
429
- page.execute_script("$('.circos > .grapher-header > h5').click()")
429
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
430
430
  sleep 1
431
431
 
432
432
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
447
447
  # download in a right format.
448
448
 
449
449
  page.should have_content('Length distribution of hits')
450
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
450
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
451
451
  sleep 1
452
452
 
453
453
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
541
541
  # right format.
542
542
 
543
543
  page.should have_content('Queries and their top hits: chord diagram')
544
- page.execute_script("$('.circos > .grapher-header > h5').click()")
544
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
545
545
  sleep 1
546
546
 
547
547
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
562
562
  # download in a right format.
563
563
 
564
564
  page.should have_content('Length distribution of hits')
565
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
565
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
566
566
  sleep 1
567
567
 
568
568
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb CHANGED
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
85
85
  # right format.
86
86
 
87
87
  page.should have_content('Queries and their top hits: chord diagram')
88
- page.execute_script("$('.circos > .grapher-header > h5').click()")
88
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
89
89
  sleep 1
90
90
 
91
91
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
107
107
  # download in a right format.
108
108
 
109
109
  page.should have_content('Length distribution of hits')
110
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
110
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
111
111
  sleep 1
112
112
 
113
113
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
201
201
  # right format.
202
202
 
203
203
  page.should have_content('Queries and their top hits: chord diagram')
204
- page.execute_script("$('.circos > .grapher-header > h5').click()")
204
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
205
205
  sleep 1
206
206
 
207
207
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
221
221
  # download in a right format.
222
222
 
223
223
  page.should have_content('Length distribution of hits')
224
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
224
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
225
225
  sleep 1
226
226
 
227
227
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
315
315
  # right format.
316
316
 
317
317
  page.should have_content('Queries and their top hits: chord diagram')
318
- page.execute_script("$('.circos > .grapher-header > h5').click()")
318
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
319
319
  sleep 1
320
320
 
321
321
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
335
335
  # download in a right format.
336
336
 
337
337
  page.should have_content('Length distribution of hits')
338
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
338
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
339
339
  sleep 1
340
340
 
341
341
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
426
426
  # right format.
427
427
 
428
428
  page.should have_content('Queries and their top hits: chord diagram')
429
- page.execute_script("$('.circos > .grapher-header > h5').click()")
429
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
430
430
  sleep 1
431
431
 
432
432
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
447
447
  # download in a right format.
448
448
 
449
449
  page.should have_content('Length distribution of hits')
450
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
450
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
451
451
  sleep 1
452
452
 
453
453
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
541
541
  # right format.
542
542
 
543
543
  page.should have_content('Queries and their top hits: chord diagram')
544
- page.execute_script("$('.circos > .grapher-header > h5').click()")
544
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
545
545
  sleep 1
546
546
 
547
547
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
562
562
  # download in a right format.
563
563
 
564
564
  page.should have_content('Length distribution of hits')
565
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
565
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
566
566
  sleep 1
567
567
 
568
568
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb CHANGED
@@ -82,7 +82,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
82
82
  # download of PNG/SVG file and test that it initiated a file download in a
83
83
  # right format.
84
84
  page.should have_content('Queries and their top hits: chord diagram')
85
- page.execute_script("$('.circos > .grapher-header > h5').click()")
85
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
86
86
  sleep 1
87
87
 
88
88
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -102,7 +102,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
102
102
  # click on the download of PNG/SVG file and test that it initiated a file
103
103
  # download in a right format.
104
104
  page.should have_content('Length distribution of hits')
105
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
105
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
106
106
  sleep 1
107
107
 
108
108
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -193,7 +193,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
193
193
  # right format.
194
194
 
195
195
  page.should have_content('Queries and their top hits: chord diagram')
196
- page.execute_script("$('.circos > .grapher-header > h5').click()")
196
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
197
197
  sleep 1
198
198
 
199
199
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -213,7 +213,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
213
213
  # download in a right format.
214
214
 
215
215
  page.should have_content('Length distribution of hits')
216
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
216
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
217
217
  sleep 1
218
218
 
219
219
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -310,7 +310,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
310
310
  # right format.
311
311
 
312
312
  page.should have_content('Queries and their top hits: chord diagram')
313
- page.execute_script("$('.circos > .grapher-header > h5').click()")
313
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
314
314
  sleep 1
315
315
 
316
316
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -330,7 +330,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
330
330
  # download in a right format.
331
331
 
332
332
  page.should have_content('Length distribution of hits')
333
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
333
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
334
334
  sleep 1
335
335
  page.execute_script("$('.export-to-png:eq(1)').click()")
336
336
  wait_for_download
@@ -424,7 +424,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
424
424
  # right format.
425
425
 
426
426
  page.should have_content('Queries and their top hits: chord diagram')
427
- page.execute_script("$('.circos > .grapher-header > h5').click()")
427
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
428
428
  sleep 1
429
429
 
430
430
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -445,7 +445,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
445
445
  # download in a right format.
446
446
 
447
447
  page.should have_content('Length distribution of hits')
448
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
448
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
449
449
  sleep 1
450
450
 
451
451
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -542,7 +542,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
542
542
  # right format.
543
543
 
544
544
  page.should have_content('Queries and their top hits: chord diagram')
545
- page.execute_script("$('.circos > .grapher-header > h5').click()")
545
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
546
546
  sleep 1
547
547
 
548
548
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -563,7 +563,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
563
563
  # download in a right format.
564
564
 
565
565
  page.should have_content('Length distribution of hits')
566
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
566
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
567
567
  sleep 1
568
568
 
569
569
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb CHANGED
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
85
85
  # right format.
86
86
 
87
87
  page.should have_content('Queries and their top hits: chord diagram')
88
- page.execute_script("$('.circos > .grapher-header > h5').click()")
88
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
89
89
  sleep 1
90
90
 
91
91
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
107
107
  # download in a right format.
108
108
 
109
109
  page.should have_content('Length distribution of hits')
110
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
110
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
111
111
  sleep 1
112
112
 
113
113
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
201
201
  # right format.
202
202
 
203
203
  page.should have_content('Queries and their top hits: chord diagram')
204
- page.execute_script("$('.circos > .grapher-header > h5').click()")
204
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
205
205
  sleep 1
206
206
 
207
207
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
221
221
  # download in a right format.
222
222
 
223
223
  page.should have_content('Length distribution of hits')
224
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
224
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
225
225
  sleep 1
226
226
 
227
227
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
315
315
  # right format.
316
316
 
317
317
  page.should have_content('Queries and their top hits: chord diagram')
318
- page.execute_script("$('.circos > .grapher-header > h5').click()")
318
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
319
319
  sleep 1
320
320
 
321
321
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
335
335
  # download in a right format.
336
336
 
337
337
  page.should have_content('Length distribution of hits')
338
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
338
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
339
339
  sleep 1
340
340
 
341
341
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
426
426
  # right format.
427
427
 
428
428
  page.should have_content('Queries and their top hits: chord diagram')
429
- page.execute_script("$('.circos > .grapher-header > h5').click()")
429
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
430
430
  sleep 1
431
431
 
432
432
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
447
447
  # download in a right format.
448
448
 
449
449
  page.should have_content('Length distribution of hits')
450
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
450
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
451
451
  sleep 1
452
452
 
453
453
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
541
541
  # right format.
542
542
 
543
543
  page.should have_content('Queries and their top hits: chord diagram')
544
- page.execute_script("$('.circos > .grapher-header > h5').click()")
544
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
545
545
  sleep 1
546
546
 
547
547
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
562
562
  # download in a right format.
563
563
 
564
564
  page.should have_content('Length distribution of hits')
565
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
565
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
566
566
  sleep 1
567
567
 
568
568
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb CHANGED
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
85
85
  # right format.
86
86
 
87
87
  page.should have_content('Queries and their top hits: chord diagram')
88
- page.execute_script("$('.circos > .grapher-header > h5').click()")
88
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
89
89
  sleep 1
90
90
 
91
91
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
107
107
  # download in a right format.
108
108
 
109
109
  page.should have_content('Length distribution of hits')
110
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
110
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
111
111
  sleep 1
112
112
 
113
113
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
201
201
  # right format.
202
202
 
203
203
  page.should have_content('Queries and their top hits: chord diagram')
204
- page.execute_script("$('.circos > .grapher-header > h5').click()")
204
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
205
205
  sleep 1
206
206
 
207
207
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
221
221
  # download in a right format.
222
222
 
223
223
  page.should have_content('Length distribution of hits')
224
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
224
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
225
225
  sleep 1
226
226
 
227
227
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
315
315
  # right format.
316
316
 
317
317
  page.should have_content('Queries and their top hits: chord diagram')
318
- page.execute_script("$('.circos > .grapher-header > h5').click()")
318
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
319
319
  sleep 1
320
320
 
321
321
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
335
335
  # download in a right format.
336
336
 
337
337
  page.should have_content('Length distribution of hits')
338
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
338
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
339
339
  sleep 1
340
340
 
341
341
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
426
426
  # right format.
427
427
 
428
428
  page.should have_content('Queries and their top hits: chord diagram')
429
- page.execute_script("$('.circos > .grapher-header > h5').click()")
429
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
430
430
  sleep 1
431
431
 
432
432
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
447
447
  # download in a right format.
448
448
 
449
449
  page.should have_content('Length distribution of hits')
450
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
450
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
451
451
  sleep 1
452
452
 
453
453
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
541
541
  # right format.
542
542
 
543
543
  page.should have_content('Queries and their top hits: chord diagram')
544
- page.execute_script("$('.circos > .grapher-header > h5').click()")
544
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
545
545
  sleep 1
546
546
 
547
547
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
562
562
  # download in a right format.
563
563
 
564
564
  page.should have_content('Length distribution of hits')
565
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
565
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
566
566
  sleep 1
567
567
 
568
568
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb CHANGED
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
85
85
  # right format.
86
86
 
87
87
  page.should have_content('Queries and their top hits: chord diagram')
88
- page.execute_script("$('.circos > .grapher-header > h5').click()")
88
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
89
89
  sleep 1
90
90
 
91
91
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
107
107
  # download in a right format.
108
108
 
109
109
  page.should have_content('Length distribution of hits')
110
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
110
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
111
111
  sleep 1
112
112
 
113
113
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
201
201
  # right format.
202
202
 
203
203
  page.should have_content('Queries and their top hits: chord diagram')
204
- page.execute_script("$('.circos > .grapher-header > h5').click()")
204
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
205
205
  sleep 1
206
206
 
207
207
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
221
221
  # download in a right format.
222
222
 
223
223
  page.should have_content('Length distribution of hits')
224
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
224
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
225
225
  sleep 1
226
226
 
227
227
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
315
315
  # right format.
316
316
 
317
317
  page.should have_content('Queries and their top hits: chord diagram')
318
- page.execute_script("$('.circos > .grapher-header > h5').click()")
318
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
319
319
  sleep 1
320
320
 
321
321
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
335
335
  # download in a right format.
336
336
 
337
337
  page.should have_content('Length distribution of hits')
338
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
338
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
339
339
  sleep 1
340
340
 
341
341
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
426
426
  # right format.
427
427
 
428
428
  page.should have_content('Queries and their top hits: chord diagram')
429
- page.execute_script("$('.circos > .grapher-header > h5').click()")
429
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
430
430
  sleep 1
431
431
 
432
432
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
447
447
  # download in a right format.
448
448
 
449
449
  page.should have_content('Length distribution of hits')
450
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
450
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
451
451
  sleep 1
452
452
 
453
453
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
541
541
  # right format.
542
542
 
543
543
  page.should have_content('Queries and their top hits: chord diagram')
544
- page.execute_script("$('.circos > .grapher-header > h5').click()")
544
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
545
545
  sleep 1
546
546
 
547
547
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
562
562
  # download in a right format.
563
563
 
564
564
  page.should have_content('Length distribution of hits')
565
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
565
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
566
566
  sleep 1
567
567
 
568
568
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb CHANGED
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
85
85
  # right format.
86
86
 
87
87
  page.should have_content('Queries and their top hits: chord diagram')
88
- page.execute_script("$('.circos > .grapher-header > h5').click()")
88
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
89
89
  sleep 1
90
90
 
91
91
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
107
107
  # download in a right format.
108
108
 
109
109
  page.should have_content('Length distribution of hits')
110
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
110
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
111
111
  sleep 1
112
112
 
113
113
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
201
201
  # right format.
202
202
 
203
203
  page.should have_content('Queries and their top hits: chord diagram')
204
- page.execute_script("$('.circos > .grapher-header > h5').click()")
204
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
205
205
  sleep 1
206
206
 
207
207
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
221
221
  # download in a right format.
222
222
 
223
223
  page.should have_content('Length distribution of hits')
224
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
224
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
225
225
  sleep 1
226
226
 
227
227
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
315
315
  # right format.
316
316
 
317
317
  page.should have_content('Queries and their top hits: chord diagram')
318
- page.execute_script("$('.circos > .grapher-header > h5').click()")
318
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
319
319
  sleep 1
320
320
 
321
321
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
335
335
  # download in a right format.
336
336
 
337
337
  page.should have_content('Length distribution of hits')
338
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
338
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
339
339
  sleep 1
340
340
 
341
341
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
426
426
  # right format.
427
427
 
428
428
  page.should have_content('Queries and their top hits: chord diagram')
429
- page.execute_script("$('.circos > .grapher-header > h5').click()")
429
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
430
430
  sleep 1
431
431
 
432
432
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
447
447
  # download in a right format.
448
448
 
449
449
  page.should have_content('Length distribution of hits')
450
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
450
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
451
451
  sleep 1
452
452
 
453
453
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
541
541
  # right format.
542
542
 
543
543
  page.should have_content('Queries and their top hits: chord diagram')
544
- page.execute_script("$('.circos > .grapher-header > h5').click()")
544
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
545
545
  sleep 1
546
546
 
547
547
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
562
562
  # download in a right format.
563
563
 
564
564
  page.should have_content('Length distribution of hits')
565
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
565
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
566
566
  sleep 1
567
567
 
568
568
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb CHANGED
@@ -84,7 +84,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
84
84
  # right format.
85
85
 
86
86
  page.should have_content('Queries and their top hits: chord diagram')
87
- page.execute_script("$('.circos > .grapher-header > h5').click()")
87
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
88
88
  sleep 1
89
89
 
90
90
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -106,7 +106,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
106
106
  # download in a right format.
107
107
 
108
108
  page.should have_content('Length distribution of hits')
109
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
109
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
110
110
  sleep 1
111
111
 
112
112
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -200,7 +200,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
200
200
  # right format.
201
201
 
202
202
  page.should have_content('Queries and their top hits: chord diagram')
203
- page.execute_script("$('.circos > .grapher-header > h5').click()")
203
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
204
204
  sleep 1
205
205
 
206
206
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -220,7 +220,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
220
220
  # download in a right format.
221
221
 
222
222
  page.should have_content('Length distribution of hits')
223
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
223
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
224
224
  sleep 1
225
225
 
226
226
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -314,7 +314,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
314
314
  # right format.
315
315
 
316
316
  page.should have_content('Queries and their top hits: chord diagram')
317
- page.execute_script("$('.circos > .grapher-header > h5').click()")
317
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
318
318
  sleep 1
319
319
 
320
320
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -334,7 +334,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
334
334
  # download in a right format.
335
335
 
336
336
  page.should have_content('Length distribution of hits')
337
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
337
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
338
338
  sleep 1
339
339
 
340
340
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -425,7 +425,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
425
425
  # right format.
426
426
 
427
427
  page.should have_content('Queries and their top hits: chord diagram')
428
- page.execute_script("$('.circos > .grapher-header > h5').click()")
428
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
429
429
  sleep 1
430
430
 
431
431
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -446,7 +446,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
446
446
  # download in a right format.
447
447
 
448
448
  page.should have_content('Length distribution of hits')
449
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
449
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
450
450
  sleep 1
451
451
 
452
452
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -539,7 +539,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
539
539
  # right format.
540
540
 
541
541
  page.should have_content('Queries and their top hits: chord diagram')
542
- page.execute_script("$('.circos > .grapher-header > h5').click()")
542
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
543
543
  sleep 1
544
544
 
545
545
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -560,7 +560,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
560
560
  # download in a right format.
561
561
 
562
562
  page.should have_content('Length distribution of hits')
563
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
563
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
564
564
  sleep 1
565
565
 
566
566
  page.execute_script("$('.export-to-png:eq(1)').click()")
data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb CHANGED
@@ -77,7 +77,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
77
77
  # right format.
78
78
 
79
79
  page.should have_content('Queries and their top hits: chord diagram')
80
- page.execute_script("$('.circos > .grapher-header > h5').click()")
80
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
81
81
  sleep 1
82
82
 
83
83
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -99,7 +99,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
99
99
  # download in a right format.
100
100
 
101
101
  page.should have_content('Length distribution of hits')
102
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
102
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
103
103
  sleep 1
104
104
 
105
105
  page.execute_script("$('.export-to-png:eq(1)').click()")
@@ -191,7 +191,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
191
191
  # right format.
192
192
 
193
193
  page.should have_content('Queries and their top hits: chord diagram')
194
- page.execute_script("$('.circos > .grapher-header > h5').click()")
194
+ page.execute_script("$('.circos > .grapher-header > h4').click()")
195
195
  sleep 1
196
196
 
197
197
  page.execute_script("$('.export-to-png:eq(0)').click()")
@@ -213,7 +213,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
213
213
  # download in a right format.
214
214
 
215
215
  page.should have_content('Length distribution of hits')
216
- page.execute_script("$('.length-distribution > .grapher-header > h5').click()")
216
+ page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
217
217
  sleep 1
218
218
 
219
219
  page.execute_script("$('.export-to-png:eq(1)').click()")
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: sequenceserver
3
3
  version: !ruby/object:Gem::Version
4
- version: 2.0.0.rc3
4
+ version: 2.0.0.rc4
5
5
  platform: ruby
6
6
  authors:
7
7
  - Anurag Priyam
@@ -11,7 +11,7 @@ authors:
11
11
  autorequire:
12
12
  bindir: bin
13
13
  cert_chain: []
14
- date: 2020-05-04 00:00:00.000000000 Z
14
+ date: 2020-05-24 00:00:00.000000000 Z
15
15
  dependencies:
16
16
  - !ruby/object:Gem::Dependency
17
17
  name: json_pure
@@ -247,6 +247,7 @@ files:
247
247
  - ".bootstrap/config.json"
248
248
  - ".codeclimate.yml"
249
249
  - ".csslintrc"
250
+ - ".dockerignore"
250
251
  - ".eslintignore"
251
252
  - ".eslintrc.json"
252
253
  - ".gitignore"