sequenceserver 2.0.0.rc3 → 2.0.0.rc4
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- checksums.yaml +4 -4
- data/.dockerignore +1 -0
- data/Dockerfile +14 -12
- data/lib/sequenceserver.rb +20 -2
- data/lib/sequenceserver/database.rb +8 -0
- data/lib/sequenceserver/version.rb +1 -1
- data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +10 -10
- data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +10 -10
- data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +10 -10
- data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +10 -10
- data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +10 -10
- data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +10 -10
- data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +10 -10
- data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +10 -10
- data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +10 -10
- data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +4 -4
- metadata +3 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA256:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 56e26f480b73ad075d19001178316bce0bf7a5b26eba33a36dfb17db8ad8e525
|
4
|
+
data.tar.gz: 9b9e8f88a1941181a8e71e89d93e07f4b2a47d07cfb44e6691333e56eb31537a
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 07b11c9ed4f89c81d49d73a0a10fde2a89326dab10cefc8794ed13bc165831d234393cf36cdc58c1552ce06bde2057e468e6e17fbaa438c4a31d0036c65591b5
|
7
|
+
data.tar.gz: 406996da9f95d6c9c2463448d9f4ff72dd33fb70d73bf2e1bbb926c17c641d37d89e9f9c18156ac31d9fc50d5141338ed70e522fc46d8e35903dde9b015e79f6
|
data/.dockerignore
ADDED
@@ -0,0 +1 @@
|
|
1
|
+
_site
|
data/Dockerfile
CHANGED
@@ -1,23 +1,25 @@
|
|
1
|
-
FROM debian:
|
1
|
+
FROM debian:buster-slim
|
2
2
|
|
3
3
|
LABEL Description="Intuitive local web frontend for the BLAST bioinformatics tool"
|
4
4
|
LABEL MailingList="https://groups.google.com/forum/#!forum/sequenceserver"
|
5
5
|
LABEL Website="http://www.sequenceserver.com"
|
6
|
-
LABEL Version="1.1.0 beta"
|
7
6
|
|
8
|
-
RUN apt-get update
|
9
|
-
build-essential \
|
10
|
-
|
11
|
-
curl wget \
|
12
|
-
gnupg \
|
13
|
-
git \
|
14
|
-
zlib1g-dev
|
7
|
+
RUN apt-get update && apt-get install -y --no-install-recommends \
|
8
|
+
ruby ruby-dev build-essential curl gnupg git wget \
|
9
|
+
zlib1g-dev && rm -rf /var/lib/apt/lists/*
|
15
10
|
|
16
11
|
VOLUME ["/db"]
|
17
12
|
EXPOSE 4567
|
18
13
|
|
19
14
|
COPY . /sequenceserver
|
20
15
|
WORKDIR /sequenceserver
|
21
|
-
|
22
|
-
|
23
|
-
|
16
|
+
# Install bundler, then use bundler to install SequenceServer's dependencies,
|
17
|
+
# and then use SequenceServer to install BLAST. In the last step, -s is used
|
18
|
+
# so that SequenceServer will exit after writing configuration file instead
|
19
|
+
# of starting up, while -d is used to suppress questions about database dir.
|
20
|
+
RUN gem install bundler && \
|
21
|
+
bundle install --without=development && \
|
22
|
+
yes '' | bundle exec bin/sequenceserver -s -d spec/database/sample
|
23
|
+
RUN touch ~/.sequenceserver/asked_to_join
|
24
|
+
|
25
|
+
CMD ["bundle", "exec", "bin/sequenceserver", "-d", "/db"]
|
data/lib/sequenceserver.rb
CHANGED
@@ -4,8 +4,12 @@ require 'resolv'
|
|
4
4
|
|
5
5
|
# Top level module / namespace.
|
6
6
|
module SequenceServer
|
7
|
-
#
|
7
|
+
# The default version of BLAST that will be downloaded and configured for use.
|
8
8
|
BLAST_VERSION = '2.10.0+'.freeze
|
9
|
+
# The minimum version of BLAST that SequenceServer is happy to run with. This
|
10
|
+
# is for compatiblity with older database formats. Users will download BLAST
|
11
|
+
# themselves.
|
12
|
+
MIN_BLAST_VERSION = '2.9.0+'.freeze
|
9
13
|
|
10
14
|
# Default location of configuration file.
|
11
15
|
DEFAULT_CONFIG_FILE = '~/.sequenceserver.conf'.freeze
|
@@ -234,7 +238,7 @@ module SequenceServer
|
|
234
238
|
end
|
235
239
|
version = out.split[1]
|
236
240
|
fail BLAST_NOT_INSTALLED_OR_NOT_EXECUTABLE if version.empty?
|
237
|
-
fail BLAST_NOT_COMPATIBLE, version unless version
|
241
|
+
fail BLAST_NOT_COMPATIBLE, version unless is_compatible(version, MIN_BLAST_VERSION)
|
238
242
|
end
|
239
243
|
|
240
244
|
def server_url
|
@@ -285,5 +289,19 @@ module SequenceServer
|
|
285
289
|
def command?(command)
|
286
290
|
system("which #{command} > /dev/null 2>&1")
|
287
291
|
end
|
292
|
+
|
293
|
+
# Returns true if the given version is higher than the minimum expected
|
294
|
+
# version string.
|
295
|
+
def is_compatible(given, expected)
|
296
|
+
# The speceship operator (<=>) below returns -1, 0, 1 depending on
|
297
|
+
# on whether the left operand is lower, same, or higher than the
|
298
|
+
# right operand. We want the left operand to be the same or higher.
|
299
|
+
(parse_version(given) <=> parse_version(expected)) >= 0
|
300
|
+
end
|
301
|
+
|
302
|
+
# Turn version string into an arrary of its component numbers.
|
303
|
+
def parse_version(version_string)
|
304
|
+
version_string.split('.').map(&:to_i)
|
305
|
+
end
|
288
306
|
end
|
289
307
|
end
|
@@ -251,6 +251,14 @@ module SequenceServer
|
|
251
251
|
" -taxid #{taxid}"
|
252
252
|
out, err = sys(cmd, path: config[:bin])
|
253
253
|
puts out, err unless quiet
|
254
|
+
rescue CommandFailed => e
|
255
|
+
puts <<~MSG
|
256
|
+
Could not create BLAST database for: #{file}
|
257
|
+
Tried: #{cmd}
|
258
|
+
stdout: #{e.stdout}
|
259
|
+
stderr: #{e.stderr}
|
260
|
+
MSG
|
261
|
+
exit!
|
254
262
|
end
|
255
263
|
|
256
264
|
# Show file path and guessed sequence type to the user and obtain a y/n
|
@@ -82,7 +82,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
82
82
|
# download of PNG/SVG file and test that it initiated a file download in a
|
83
83
|
# right format.
|
84
84
|
page.should have_content('Queries and their top hits: chord diagram')
|
85
|
-
page.execute_script("$('.circos > .grapher-header >
|
85
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
86
86
|
sleep 1
|
87
87
|
|
88
88
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -102,7 +102,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
102
102
|
# click on the download of PNG/SVG file and test that it initiated a file
|
103
103
|
# download in a right format.
|
104
104
|
page.should have_content('Length distribution of hits')
|
105
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
105
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
106
106
|
sleep 1
|
107
107
|
|
108
108
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -193,7 +193,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
193
193
|
# right format.
|
194
194
|
|
195
195
|
page.should have_content('Queries and their top hits: chord diagram')
|
196
|
-
page.execute_script("$('.circos > .grapher-header >
|
196
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
197
197
|
sleep 1
|
198
198
|
|
199
199
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -213,7 +213,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
213
213
|
# download in a right format.
|
214
214
|
|
215
215
|
page.should have_content('Length distribution of hits')
|
216
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
216
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
217
217
|
sleep 1
|
218
218
|
|
219
219
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -307,7 +307,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
307
307
|
# right format.
|
308
308
|
|
309
309
|
page.should have_content('Queries and their top hits: chord diagram')
|
310
|
-
page.execute_script("$('.circos > .grapher-header >
|
310
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
311
311
|
sleep 1
|
312
312
|
|
313
313
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -327,7 +327,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
327
327
|
# download in a right format.
|
328
328
|
|
329
329
|
page.should have_content('Length distribution of hits')
|
330
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
330
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
331
331
|
sleep 1
|
332
332
|
|
333
333
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -422,7 +422,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
422
422
|
# right format.
|
423
423
|
|
424
424
|
page.should have_content('Queries and their top hits: chord diagram')
|
425
|
-
page.execute_script("$('.circos > .grapher-header >
|
425
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
426
426
|
sleep 1
|
427
427
|
|
428
428
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -443,7 +443,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
443
443
|
# download in a right format.
|
444
444
|
|
445
445
|
page.should have_content('Length distribution of hits')
|
446
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
446
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
447
447
|
sleep 1
|
448
448
|
|
449
449
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -537,7 +537,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
537
537
|
# right format.
|
538
538
|
|
539
539
|
page.should have_content('Queries and their top hits: chord diagram')
|
540
|
-
page.execute_script("$('.circos > .grapher-header >
|
540
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
541
541
|
sleep 1
|
542
542
|
|
543
543
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -558,7 +558,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
558
558
|
# download in a right format.
|
559
559
|
|
560
560
|
page.should have_content('Length distribution of hits')
|
561
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
561
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
562
562
|
sleep 1
|
563
563
|
|
564
564
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
85
85
|
# right format.
|
86
86
|
|
87
87
|
page.should have_content('Queries and their top hits: chord diagram')
|
88
|
-
page.execute_script("$('.circos > .grapher-header >
|
88
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
89
89
|
sleep 1
|
90
90
|
|
91
91
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
107
107
|
# download in a right format.
|
108
108
|
|
109
109
|
page.should have_content('Length distribution of hits')
|
110
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
110
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
111
111
|
sleep 1
|
112
112
|
|
113
113
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
201
201
|
# right format.
|
202
202
|
|
203
203
|
page.should have_content('Queries and their top hits: chord diagram')
|
204
|
-
page.execute_script("$('.circos > .grapher-header >
|
204
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
205
205
|
sleep 1
|
206
206
|
|
207
207
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
221
221
|
# download in a right format.
|
222
222
|
|
223
223
|
page.should have_content('Length distribution of hits')
|
224
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
224
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
225
225
|
sleep 1
|
226
226
|
|
227
227
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
315
315
|
# right format.
|
316
316
|
|
317
317
|
page.should have_content('Queries and their top hits: chord diagram')
|
318
|
-
page.execute_script("$('.circos > .grapher-header >
|
318
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
319
319
|
sleep 1
|
320
320
|
|
321
321
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
335
335
|
# download in a right format.
|
336
336
|
|
337
337
|
page.should have_content('Length distribution of hits')
|
338
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
338
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
339
339
|
sleep 1
|
340
340
|
|
341
341
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
426
426
|
# right format.
|
427
427
|
|
428
428
|
page.should have_content('Queries and their top hits: chord diagram')
|
429
|
-
page.execute_script("$('.circos > .grapher-header >
|
429
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
430
430
|
sleep 1
|
431
431
|
|
432
432
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
447
447
|
# download in a right format.
|
448
448
|
|
449
449
|
page.should have_content('Length distribution of hits')
|
450
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
450
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
451
451
|
sleep 1
|
452
452
|
|
453
453
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
541
541
|
# right format.
|
542
542
|
|
543
543
|
page.should have_content('Queries and their top hits: chord diagram')
|
544
|
-
page.execute_script("$('.circos > .grapher-header >
|
544
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
545
545
|
sleep 1
|
546
546
|
|
547
547
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
562
562
|
# download in a right format.
|
563
563
|
|
564
564
|
page.should have_content('Length distribution of hits')
|
565
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
565
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
566
566
|
sleep 1
|
567
567
|
|
568
568
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
85
85
|
# right format.
|
86
86
|
|
87
87
|
page.should have_content('Queries and their top hits: chord diagram')
|
88
|
-
page.execute_script("$('.circos > .grapher-header >
|
88
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
89
89
|
sleep 1
|
90
90
|
|
91
91
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
107
107
|
# download in a right format.
|
108
108
|
|
109
109
|
page.should have_content('Length distribution of hits')
|
110
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
110
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
111
111
|
sleep 1
|
112
112
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|
113
113
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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201
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# right format.
|
202
202
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203
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page.should have_content('Queries and their top hits: chord diagram')
|
204
|
-
page.execute_script("$('.circos > .grapher-header >
|
204
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+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
205
205
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sleep 1
|
206
206
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207
207
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page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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221
221
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# download in a right format.
|
222
222
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223
223
|
page.should have_content('Length distribution of hits')
|
224
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
224
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+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
225
225
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sleep 1
|
226
226
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227
227
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page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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315
315
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# right format.
|
316
316
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317
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|
page.should have_content('Queries and their top hits: chord diagram')
|
318
|
-
page.execute_script("$('.circos > .grapher-header >
|
318
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
319
319
|
sleep 1
|
320
320
|
|
321
321
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
335
335
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# download in a right format.
|
336
336
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|
337
337
|
page.should have_content('Length distribution of hits')
|
338
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
338
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
339
339
|
sleep 1
|
340
340
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341
341
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
426
426
|
# right format.
|
427
427
|
|
428
428
|
page.should have_content('Queries and their top hits: chord diagram')
|
429
|
-
page.execute_script("$('.circos > .grapher-header >
|
429
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
430
430
|
sleep 1
|
431
431
|
|
432
432
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
447
447
|
# download in a right format.
|
448
448
|
|
449
449
|
page.should have_content('Length distribution of hits')
|
450
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
450
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
451
451
|
sleep 1
|
452
452
|
|
453
453
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
541
541
|
# right format.
|
542
542
|
|
543
543
|
page.should have_content('Queries and their top hits: chord diagram')
|
544
|
-
page.execute_script("$('.circos > .grapher-header >
|
544
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
545
545
|
sleep 1
|
546
546
|
|
547
547
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
562
562
|
# download in a right format.
|
563
563
|
|
564
564
|
page.should have_content('Length distribution of hits')
|
565
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
565
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
566
566
|
sleep 1
|
567
567
|
|
568
568
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -82,7 +82,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
82
82
|
# download of PNG/SVG file and test that it initiated a file download in a
|
83
83
|
# right format.
|
84
84
|
page.should have_content('Queries and their top hits: chord diagram')
|
85
|
-
page.execute_script("$('.circos > .grapher-header >
|
85
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
86
86
|
sleep 1
|
87
87
|
|
88
88
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -102,7 +102,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
102
102
|
# click on the download of PNG/SVG file and test that it initiated a file
|
103
103
|
# download in a right format.
|
104
104
|
page.should have_content('Length distribution of hits')
|
105
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
105
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
106
106
|
sleep 1
|
107
107
|
|
108
108
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -193,7 +193,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
193
193
|
# right format.
|
194
194
|
|
195
195
|
page.should have_content('Queries and their top hits: chord diagram')
|
196
|
-
page.execute_script("$('.circos > .grapher-header >
|
196
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
197
197
|
sleep 1
|
198
198
|
|
199
199
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -213,7 +213,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
213
213
|
# download in a right format.
|
214
214
|
|
215
215
|
page.should have_content('Length distribution of hits')
|
216
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
216
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
217
217
|
sleep 1
|
218
218
|
|
219
219
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -310,7 +310,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
310
310
|
# right format.
|
311
311
|
|
312
312
|
page.should have_content('Queries and their top hits: chord diagram')
|
313
|
-
page.execute_script("$('.circos > .grapher-header >
|
313
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
314
314
|
sleep 1
|
315
315
|
|
316
316
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -330,7 +330,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
330
330
|
# download in a right format.
|
331
331
|
|
332
332
|
page.should have_content('Length distribution of hits')
|
333
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
333
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
334
334
|
sleep 1
|
335
335
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
336
336
|
wait_for_download
|
@@ -424,7 +424,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
424
424
|
# right format.
|
425
425
|
|
426
426
|
page.should have_content('Queries and their top hits: chord diagram')
|
427
|
-
page.execute_script("$('.circos > .grapher-header >
|
427
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
428
428
|
sleep 1
|
429
429
|
|
430
430
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -445,7 +445,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
445
445
|
# download in a right format.
|
446
446
|
|
447
447
|
page.should have_content('Length distribution of hits')
|
448
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
448
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
449
449
|
sleep 1
|
450
450
|
|
451
451
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -542,7 +542,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
542
542
|
# right format.
|
543
543
|
|
544
544
|
page.should have_content('Queries and their top hits: chord diagram')
|
545
|
-
page.execute_script("$('.circos > .grapher-header >
|
545
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
546
546
|
sleep 1
|
547
547
|
|
548
548
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -563,7 +563,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
563
563
|
# download in a right format.
|
564
564
|
|
565
565
|
page.should have_content('Length distribution of hits')
|
566
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
566
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
567
567
|
sleep 1
|
568
568
|
|
569
569
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
85
85
|
# right format.
|
86
86
|
|
87
87
|
page.should have_content('Queries and their top hits: chord diagram')
|
88
|
-
page.execute_script("$('.circos > .grapher-header >
|
88
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
89
89
|
sleep 1
|
90
90
|
|
91
91
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
107
107
|
# download in a right format.
|
108
108
|
|
109
109
|
page.should have_content('Length distribution of hits')
|
110
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
110
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
111
111
|
sleep 1
|
112
112
|
|
113
113
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
201
201
|
# right format.
|
202
202
|
|
203
203
|
page.should have_content('Queries and their top hits: chord diagram')
|
204
|
-
page.execute_script("$('.circos > .grapher-header >
|
204
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
205
205
|
sleep 1
|
206
206
|
|
207
207
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
221
221
|
# download in a right format.
|
222
222
|
|
223
223
|
page.should have_content('Length distribution of hits')
|
224
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
224
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
225
225
|
sleep 1
|
226
226
|
|
227
227
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
315
315
|
# right format.
|
316
316
|
|
317
317
|
page.should have_content('Queries and their top hits: chord diagram')
|
318
|
-
page.execute_script("$('.circos > .grapher-header >
|
318
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
319
319
|
sleep 1
|
320
320
|
|
321
321
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
335
335
|
# download in a right format.
|
336
336
|
|
337
337
|
page.should have_content('Length distribution of hits')
|
338
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
338
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
339
339
|
sleep 1
|
340
340
|
|
341
341
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
426
426
|
# right format.
|
427
427
|
|
428
428
|
page.should have_content('Queries and their top hits: chord diagram')
|
429
|
-
page.execute_script("$('.circos > .grapher-header >
|
429
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
430
430
|
sleep 1
|
431
431
|
|
432
432
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
447
447
|
# download in a right format.
|
448
448
|
|
449
449
|
page.should have_content('Length distribution of hits')
|
450
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
450
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
451
451
|
sleep 1
|
452
452
|
|
453
453
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
541
541
|
# right format.
|
542
542
|
|
543
543
|
page.should have_content('Queries and their top hits: chord diagram')
|
544
|
-
page.execute_script("$('.circos > .grapher-header >
|
544
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
545
545
|
sleep 1
|
546
546
|
|
547
547
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
562
562
|
# download in a right format.
|
563
563
|
|
564
564
|
page.should have_content('Length distribution of hits')
|
565
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
565
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
566
566
|
sleep 1
|
567
567
|
|
568
568
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
85
85
|
# right format.
|
86
86
|
|
87
87
|
page.should have_content('Queries and their top hits: chord diagram')
|
88
|
-
page.execute_script("$('.circos > .grapher-header >
|
88
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
89
89
|
sleep 1
|
90
90
|
|
91
91
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
107
107
|
# download in a right format.
|
108
108
|
|
109
109
|
page.should have_content('Length distribution of hits')
|
110
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
110
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
111
111
|
sleep 1
|
112
112
|
|
113
113
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
201
201
|
# right format.
|
202
202
|
|
203
203
|
page.should have_content('Queries and their top hits: chord diagram')
|
204
|
-
page.execute_script("$('.circos > .grapher-header >
|
204
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
205
205
|
sleep 1
|
206
206
|
|
207
207
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
221
221
|
# download in a right format.
|
222
222
|
|
223
223
|
page.should have_content('Length distribution of hits')
|
224
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
224
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
225
225
|
sleep 1
|
226
226
|
|
227
227
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
315
315
|
# right format.
|
316
316
|
|
317
317
|
page.should have_content('Queries and their top hits: chord diagram')
|
318
|
-
page.execute_script("$('.circos > .grapher-header >
|
318
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
319
319
|
sleep 1
|
320
320
|
|
321
321
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
335
335
|
# download in a right format.
|
336
336
|
|
337
337
|
page.should have_content('Length distribution of hits')
|
338
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
338
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
339
339
|
sleep 1
|
340
340
|
|
341
341
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
426
426
|
# right format.
|
427
427
|
|
428
428
|
page.should have_content('Queries and their top hits: chord diagram')
|
429
|
-
page.execute_script("$('.circos > .grapher-header >
|
429
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
430
430
|
sleep 1
|
431
431
|
|
432
432
|
page.execute_script("$('.export-to-png:eq(0)').click()")
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@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
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447
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# download in a right format.
|
448
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449
449
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page.should have_content('Length distribution of hits')
|
450
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
450
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+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
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451
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sleep 1
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452
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453
453
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page.execute_script("$('.export-to-png:eq(1)').click()")
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@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
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541
541
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# right format.
|
542
542
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543
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page.should have_content('Queries and their top hits: chord diagram')
|
544
|
-
page.execute_script("$('.circos > .grapher-header >
|
544
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+
page.execute_script("$('.circos > .grapher-header > h4').click()")
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545
545
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sleep 1
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546
546
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547
547
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page.execute_script("$('.export-to-png:eq(0)').click()")
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@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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562
562
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# download in a right format.
|
563
563
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564
564
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page.should have_content('Length distribution of hits')
|
565
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
565
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+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
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566
566
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sleep 1
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567
567
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568
568
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page.execute_script("$('.export-to-png:eq(1)').click()")
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@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
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85
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# right format.
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page.should have_content('Queries and their top hits: chord diagram')
|
88
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-
page.execute_script("$('.circos > .grapher-header >
|
88
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+
page.execute_script("$('.circos > .grapher-header > h4').click()")
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sleep 1
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90
90
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91
91
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page.execute_script("$('.export-to-png:eq(0)').click()")
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@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
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107
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# download in a right format.
|
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109
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page.should have_content('Length distribution of hits')
|
110
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-
page.execute_script("$('.length-distribution > .grapher-header >
|
110
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+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
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sleep 1
|
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112
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page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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201
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# right format.
|
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page.should have_content('Queries and their top hits: chord diagram')
|
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-
page.execute_script("$('.circos > .grapher-header >
|
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+
page.execute_script("$('.circos > .grapher-header > h4').click()")
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sleep 1
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page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
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# download in a right format.
|
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page.should have_content('Length distribution of hits')
|
224
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-
page.execute_script("$('.length-distribution > .grapher-header >
|
224
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+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
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sleep 1
|
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page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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315
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|
# right format.
|
316
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page.should have_content('Queries and their top hits: chord diagram')
|
318
|
-
page.execute_script("$('.circos > .grapher-header >
|
318
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+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
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sleep 1
|
320
320
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321
321
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page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
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335
335
|
# download in a right format.
|
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page.should have_content('Length distribution of hits')
|
338
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-
page.execute_script("$('.length-distribution > .grapher-header >
|
338
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+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
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|
sleep 1
|
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page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
426
426
|
# right format.
|
427
427
|
|
428
428
|
page.should have_content('Queries and their top hits: chord diagram')
|
429
|
-
page.execute_script("$('.circos > .grapher-header >
|
429
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
430
430
|
sleep 1
|
431
431
|
|
432
432
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
447
447
|
# download in a right format.
|
448
448
|
|
449
449
|
page.should have_content('Length distribution of hits')
|
450
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
450
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
451
451
|
sleep 1
|
452
452
|
|
453
453
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
541
541
|
# right format.
|
542
542
|
|
543
543
|
page.should have_content('Queries and their top hits: chord diagram')
|
544
|
-
page.execute_script("$('.circos > .grapher-header >
|
544
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
545
545
|
sleep 1
|
546
546
|
|
547
547
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
562
562
|
# download in a right format.
|
563
563
|
|
564
564
|
page.should have_content('Length distribution of hits')
|
565
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
565
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
566
566
|
sleep 1
|
567
567
|
|
568
568
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -85,7 +85,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
85
85
|
# right format.
|
86
86
|
|
87
87
|
page.should have_content('Queries and their top hits: chord diagram')
|
88
|
-
page.execute_script("$('.circos > .grapher-header >
|
88
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
89
89
|
sleep 1
|
90
90
|
|
91
91
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -107,7 +107,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
107
107
|
# download in a right format.
|
108
108
|
|
109
109
|
page.should have_content('Length distribution of hits')
|
110
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
110
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
111
111
|
sleep 1
|
112
112
|
|
113
113
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -201,7 +201,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
201
201
|
# right format.
|
202
202
|
|
203
203
|
page.should have_content('Queries and their top hits: chord diagram')
|
204
|
-
page.execute_script("$('.circos > .grapher-header >
|
204
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
205
205
|
sleep 1
|
206
206
|
|
207
207
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -221,7 +221,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
221
221
|
# download in a right format.
|
222
222
|
|
223
223
|
page.should have_content('Length distribution of hits')
|
224
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
224
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
225
225
|
sleep 1
|
226
226
|
|
227
227
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -315,7 +315,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
315
315
|
# right format.
|
316
316
|
|
317
317
|
page.should have_content('Queries and their top hits: chord diagram')
|
318
|
-
page.execute_script("$('.circos > .grapher-header >
|
318
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
319
319
|
sleep 1
|
320
320
|
|
321
321
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -335,7 +335,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
335
335
|
# download in a right format.
|
336
336
|
|
337
337
|
page.should have_content('Length distribution of hits')
|
338
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
338
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
339
339
|
sleep 1
|
340
340
|
|
341
341
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -426,7 +426,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
426
426
|
# right format.
|
427
427
|
|
428
428
|
page.should have_content('Queries and their top hits: chord diagram')
|
429
|
-
page.execute_script("$('.circos > .grapher-header >
|
429
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
430
430
|
sleep 1
|
431
431
|
|
432
432
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -447,7 +447,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
447
447
|
# download in a right format.
|
448
448
|
|
449
449
|
page.should have_content('Length distribution of hits')
|
450
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
450
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
451
451
|
sleep 1
|
452
452
|
|
453
453
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -541,7 +541,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
541
541
|
# right format.
|
542
542
|
|
543
543
|
page.should have_content('Queries and their top hits: chord diagram')
|
544
|
-
page.execute_script("$('.circos > .grapher-header >
|
544
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
545
545
|
sleep 1
|
546
546
|
|
547
547
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -562,7 +562,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
562
562
|
# download in a right format.
|
563
563
|
|
564
564
|
page.should have_content('Length distribution of hits')
|
565
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
565
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
566
566
|
sleep 1
|
567
567
|
|
568
568
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -84,7 +84,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
84
84
|
# right format.
|
85
85
|
|
86
86
|
page.should have_content('Queries and their top hits: chord diagram')
|
87
|
-
page.execute_script("$('.circos > .grapher-header >
|
87
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
88
88
|
sleep 1
|
89
89
|
|
90
90
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -106,7 +106,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
106
106
|
# download in a right format.
|
107
107
|
|
108
108
|
page.should have_content('Length distribution of hits')
|
109
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
109
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
110
110
|
sleep 1
|
111
111
|
|
112
112
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -200,7 +200,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
200
200
|
# right format.
|
201
201
|
|
202
202
|
page.should have_content('Queries and their top hits: chord diagram')
|
203
|
-
page.execute_script("$('.circos > .grapher-header >
|
203
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
204
204
|
sleep 1
|
205
205
|
|
206
206
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -220,7 +220,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
220
220
|
# download in a right format.
|
221
221
|
|
222
222
|
page.should have_content('Length distribution of hits')
|
223
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
223
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
224
224
|
sleep 1
|
225
225
|
|
226
226
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -314,7 +314,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
314
314
|
# right format.
|
315
315
|
|
316
316
|
page.should have_content('Queries and their top hits: chord diagram')
|
317
|
-
page.execute_script("$('.circos > .grapher-header >
|
317
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
318
318
|
sleep 1
|
319
319
|
|
320
320
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -334,7 +334,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
334
334
|
# download in a right format.
|
335
335
|
|
336
336
|
page.should have_content('Length distribution of hits')
|
337
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
337
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
338
338
|
sleep 1
|
339
339
|
|
340
340
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -425,7 +425,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
425
425
|
# right format.
|
426
426
|
|
427
427
|
page.should have_content('Queries and their top hits: chord diagram')
|
428
|
-
page.execute_script("$('.circos > .grapher-header >
|
428
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
429
429
|
sleep 1
|
430
430
|
|
431
431
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -446,7 +446,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
446
446
|
# download in a right format.
|
447
447
|
|
448
448
|
page.should have_content('Length distribution of hits')
|
449
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
449
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
450
450
|
sleep 1
|
451
451
|
|
452
452
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -539,7 +539,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
539
539
|
# right format.
|
540
540
|
|
541
541
|
page.should have_content('Queries and their top hits: chord diagram')
|
542
|
-
page.execute_script("$('.circos > .grapher-header >
|
542
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
543
543
|
sleep 1
|
544
544
|
|
545
545
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -560,7 +560,7 @@ describe 'report generated from imported XML',type: :feature, js: true do
|
|
560
560
|
# download in a right format.
|
561
561
|
|
562
562
|
page.should have_content('Length distribution of hits')
|
563
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
563
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
564
564
|
sleep 1
|
565
565
|
|
566
566
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -77,7 +77,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
77
77
|
# right format.
|
78
78
|
|
79
79
|
page.should have_content('Queries and their top hits: chord diagram')
|
80
|
-
page.execute_script("$('.circos > .grapher-header >
|
80
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
81
81
|
sleep 1
|
82
82
|
|
83
83
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -99,7 +99,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
99
99
|
# download in a right format.
|
100
100
|
|
101
101
|
page.should have_content('Length distribution of hits')
|
102
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
102
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
103
103
|
sleep 1
|
104
104
|
|
105
105
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
@@ -191,7 +191,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
191
191
|
# right format.
|
192
192
|
|
193
193
|
page.should have_content('Queries and their top hits: chord diagram')
|
194
|
-
page.execute_script("$('.circos > .grapher-header >
|
194
|
+
page.execute_script("$('.circos > .grapher-header > h4').click()")
|
195
195
|
sleep 1
|
196
196
|
|
197
197
|
page.execute_script("$('.export-to-png:eq(0)').click()")
|
@@ -213,7 +213,7 @@ describe 'report generated from imported XML', type: :feature, js: true do
|
|
213
213
|
# download in a right format.
|
214
214
|
|
215
215
|
page.should have_content('Length distribution of hits')
|
216
|
-
page.execute_script("$('.length-distribution > .grapher-header >
|
216
|
+
page.execute_script("$('.length-distribution > .grapher-header > h4').click()")
|
217
217
|
sleep 1
|
218
218
|
|
219
219
|
page.execute_script("$('.export-to-png:eq(1)').click()")
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: sequenceserver
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 2.0.0.
|
4
|
+
version: 2.0.0.rc4
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Anurag Priyam
|
@@ -11,7 +11,7 @@ authors:
|
|
11
11
|
autorequire:
|
12
12
|
bindir: bin
|
13
13
|
cert_chain: []
|
14
|
-
date: 2020-05-
|
14
|
+
date: 2020-05-24 00:00:00.000000000 Z
|
15
15
|
dependencies:
|
16
16
|
- !ruby/object:Gem::Dependency
|
17
17
|
name: json_pure
|
@@ -247,6 +247,7 @@ files:
|
|
247
247
|
- ".bootstrap/config.json"
|
248
248
|
- ".codeclimate.yml"
|
249
249
|
- ".csslintrc"
|
250
|
+
- ".dockerignore"
|
250
251
|
- ".eslintignore"
|
251
252
|
- ".eslintrc.json"
|
252
253
|
- ".gitignore"
|