sequenceserver 2.0.0.beta4 → 2.0.0.rc1
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- checksums.yaml +4 -4
- data/.travis.yml +7 -4
- data/AppImage/sequenceserver.sh +5 -0
- data/lib/sequenceserver.rb +9 -5
- data/lib/sequenceserver/blast/job.rb +7 -24
- data/lib/sequenceserver/blast/report.rb +66 -33
- data/lib/sequenceserver/routes.rb +28 -2
- data/lib/sequenceserver/version.rb +1 -1
- data/public/SequenceServer_logo.png +0 -0
- data/public/css/grapher.css +8 -15
- data/public/css/sequenceserver.css +115 -55
- data/public/css/sequenceserver.min.css +3 -3
- data/public/js/circos.js +1 -1
- data/public/js/download_fasta.js +17 -0
- data/public/js/grapher.js +7 -9
- data/public/js/hit.js +217 -0
- data/public/js/hits_overview.js +12 -13
- data/public/js/hsp.js +104 -84
- data/public/js/{sequenceserver.js → jquery_world.js} +1 -18
- data/public/js/kablammo.js +337 -334
- data/public/js/length_distribution.js +1 -1
- data/public/js/query.js +147 -0
- data/public/js/report.js +203 -830
- data/public/js/search.js +176 -169
- data/public/js/sequence_modal.js +167 -0
- data/public/js/sidebar.js +210 -0
- data/public/js/utils.js +2 -19
- data/public/js/visualisation_helpers.js +2 -2
- data/public/sequenceserver-report.min.js +19 -19
- data/public/sequenceserver-search.min.js +11 -11
- data/public/vendor/github/twbs/bootstrap@3.3.5/js/bootstrap.js +2 -2
- data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +5 -5
- data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +5 -5
- data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +5 -5
- data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +5 -5
- data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +5 -5
- data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +5 -5
- data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +5 -5
- data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +5 -5
- data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +5 -5
- data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +2 -2
- data/spec/capybara_spec.rb +1 -1
- data/views/layout.erb +1 -1
- metadata +9 -3
data/spec/capybara_spec.rb
CHANGED
@@ -231,7 +231,7 @@ describe 'a browser', type: :feature, js: true do
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|
231
231
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databases: protein_databases.values_at(0))
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232
232
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233
233
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## Check that there is a circos vis and unfold it.
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234
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-
page.should have_content('
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234
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+
page.should have_content('Queries and their top hits: chord diagram')
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235
235
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page.execute_script("$('.circos > .grapher-header > h5').click()")
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236
236
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sleep 1
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237
237
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data/views/layout.erb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: sequenceserver
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3
3
|
version: !ruby/object:Gem::Version
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4
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-
version: 2.0.0.
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4
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+
version: 2.0.0.rc1
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5
5
|
platform: ruby
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6
6
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authors:
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7
7
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- Anurag Priyam
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@@ -11,7 +11,7 @@ authors:
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11
11
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autorequire:
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12
12
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bindir: bin
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13
13
|
cert_chain: []
|
14
|
-
date:
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14
|
+
date: 2020-03-14 00:00:00.000000000 Z
|
15
15
|
dependencies:
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16
16
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- !ruby/object:Gem::Dependency
|
17
17
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name: json_pure
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@@ -292,6 +292,7 @@ files:
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292
292
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- lib/sequenceserver/sys.rb
|
293
293
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- lib/sequenceserver/version.rb
|
294
294
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- package.json
|
295
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+
- public/SequenceServer_logo.png
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295
296
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- public/config.js
|
296
297
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- public/css/fonts.css
|
297
298
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- public/css/grapher.css
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@@ -315,18 +316,23 @@ files:
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315
316
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- public/fonts/fontawesome-webfont.woff2
|
316
317
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- public/js/alignment_exporter.js
|
317
318
|
- public/js/circos.js
|
319
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+
- public/js/download_fasta.js
|
318
320
|
- public/js/error_modal.js
|
319
321
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- public/js/exporter.js
|
320
322
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- public/js/grapher.js
|
323
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+
- public/js/hit.js
|
321
324
|
- public/js/hits_overview.js
|
322
325
|
- public/js/hsp.js
|
326
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+
- public/js/jquery_world.js
|
323
327
|
- public/js/kablammo.js
|
324
328
|
- public/js/kablammo/alignment_viewer.js
|
325
329
|
- public/js/length_distribution.js
|
330
|
+
- public/js/query.js
|
326
331
|
- public/js/report.js
|
327
332
|
- public/js/search.js
|
328
333
|
- public/js/sequence.js
|
329
|
-
- public/js/
|
334
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+
- public/js/sequence_modal.js
|
335
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+
- public/js/sidebar.js
|
330
336
|
- public/js/svgExporter.js
|
331
337
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- public/js/utils.js
|
332
338
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- public/js/visualisation_helpers.js
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