sequenceserver 2.0.0.beta3 → 2.0.0.beta4

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Files changed (87) hide show
  1. checksums.yaml +5 -5
  2. data/.eslintrc.json +36 -0
  3. data/.rubocop.yml +1 -1
  4. data/.travis.yml +53 -20
  5. data/AppImage/recipe.yml +15 -0
  6. data/AppImage/sequenceserver.desktop +8 -0
  7. data/AppImage/sequenceserver.png +0 -0
  8. data/AppImage/sequenceserver.sh +11 -0
  9. data/README.md +79 -46
  10. data/bin/sequenceserver +4 -4
  11. data/lib/sequenceserver/version.rb +1 -1
  12. data/package.json +2 -0
  13. data/public/css/grapher.css +3 -0
  14. data/public/css/sequenceserver.css +17 -6
  15. data/public/css/sequenceserver.min.css +3 -3
  16. data/public/js/circos.js +515 -491
  17. data/public/js/grapher.js +12 -6
  18. data/public/js/hits_overview.js +321 -308
  19. data/public/js/hsp.js +12 -7
  20. data/public/js/length_distribution.js +241 -234
  21. data/public/js/report.js +196 -174
  22. data/public/js/search.js +3 -3
  23. data/public/js/sequenceserver.js +9 -9
  24. data/public/js/utils.js +17 -10
  25. data/public/js/visualisation_helpers.js +77 -77
  26. data/public/sequenceserver-report.min.js +17 -17
  27. data/public/sequenceserver-search.min.js +1 -1
  28. data/public/vendor/github/nicgirault/circosJs@1.7.0/dist/circosJS.js +1 -5
  29. data/sequenceserver.gemspec +1 -2
  30. data/spec/blast_versions/blast_2.2.30/blast_2.2.30_spec.rb +13 -13
  31. data/spec/blast_versions/blast_2.2.30/import_spec_capybara_local_2.2.30.rb +555 -25
  32. data/spec/blast_versions/blast_2.2.31/blast_2.2.31_spec.rb +13 -13
  33. data/spec/blast_versions/blast_2.2.31/import_spec_capybara_local_2.2.31.rb +558 -24
  34. data/spec/blast_versions/blast_2.3.0/blast_2.3.0_spec.rb +13 -13
  35. data/spec/blast_versions/blast_2.3.0/import_spec_capybara_local_2.3.0.rb +561 -26
  36. data/spec/blast_versions/blast_2.4.0/blast_2.4.0_spec.rb +13 -13
  37. data/spec/blast_versions/blast_2.4.0/import_spec_capybara_local_2.4.0.rb +561 -25
  38. data/spec/blast_versions/blast_2.5.0/blast_2.5.0_spec.rb +13 -13
  39. data/spec/blast_versions/blast_2.5.0/import_spec_capybara_local_2.5.0.rb +558 -24
  40. data/spec/blast_versions/blast_2.6.0/blast_2.6.0_spec.rb +13 -13
  41. data/spec/blast_versions/blast_2.6.0/import_spec_capybara_local_2.6.0.rb +559 -24
  42. data/spec/blast_versions/blast_2.7.1/blast_2.7.1_spec.rb +13 -13
  43. data/spec/blast_versions/blast_2.7.1/import_spec_capybara_local_2.7.1.rb +559 -28
  44. data/spec/blast_versions/blast_2.8.1/blast_2.8.1_spec.rb +13 -13
  45. data/spec/blast_versions/blast_2.8.1/import_spec_capybara_local_2.8.1.rb +559 -27
  46. data/spec/blast_versions/blast_2.9.0/blast_2.9.0_spec.rb +13 -13
  47. data/spec/blast_versions/blast_2.9.0/import_spec_capybara_local_2.9.0.rb +557 -25
  48. data/spec/blast_versions/diamond_0.9.24/diamond_0.9.24_spec.rb +13 -13
  49. data/spec/blast_versions/diamond_0.9.24/import_spec_capybara_local_0.9.24.rb +219 -21
  50. data/spec/capybara_spec.rb +25 -28
  51. data/spec/download_helper.rb +6 -3
  52. data/spec/sequences/MH011443_1_gi_1486783306_gb_MH011443_1.txt +6 -0
  53. data/spec/sequences/MH011443_1_gi_1486783307_gb_AYF55702_1.txt +6 -0
  54. data/spec/sequences/MH011443_1_gi_1528997474_gb_MH447967_1.txt +30 -0
  55. data/spec/sequences/MH011443_1_sp_P04637_P53_HUMAN.txt +6 -0
  56. data/spec/sequences/alignment-35_hits_diamond_blastp.txt +210 -0
  57. data/spec/sequences/alignment-35_hits_diamond_blastx.txt +210 -0
  58. data/spec/sequences/alignment-3_hits.txt +18 -0
  59. data/spec/sequences/alignment-40_hits_blastn.txt +246 -0
  60. data/spec/sequences/alignment-40_hits_blastp.txt +240 -0
  61. data/spec/sequences/alignment-40_hits_blastp_2.2.30.txt +240 -0
  62. data/spec/sequences/alignment-40_hits_blastx.txt +240 -0
  63. data/spec/sequences/alignment-40_hits_tblastn.txt +240 -0
  64. data/spec/sequences/alignment-40_hits_tblastn_2.2.30.txt +240 -0
  65. data/spec/sequences/alignment-40_hits_tblastx.txt +2664 -0
  66. data/spec/sequences/alignment-4_hits.txt +24 -0
  67. data/spec/sequences/alignment-4_hits_blastn.txt +24 -0
  68. data/spec/sequences/alignment-4_hits_blastp.txt +24 -0
  69. data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt +24 -0
  70. data/spec/sequences/alignment-4_hits_blastx.txt +24 -0
  71. data/spec/sequences/alignment-4_hits_diamond_blastp.txt +24 -0
  72. data/spec/sequences/alignment-4_hits_diamond_blastx.txt +24 -0
  73. data/spec/sequences/alignment-4_hits_tblastn.txt +24 -0
  74. data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt +24 -0
  75. data/spec/sequences/alignment-4_hits_tblastx.txt +318 -0
  76. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1099170394_ref_XP_018868681_1.txt +6 -0
  77. data/spec/sequences/sp_P04637_P53_HUMAN_gi_120407068_ref_NP_000537_3.txt +6 -0
  78. data/spec/sequences/sp_P04637_P53_HUMAN_gi_1484127324_gb_MG595988_1.txt +6 -0
  79. data/spec/sequences/sp_P04637_P53_HUMAN_gi_395440626_gb_JQ694049_1.txt +6 -0
  80. data/spec/sequences/sp_P04637_P53_HUMAN_sp_P04637_P53_HUMAN.txt +6 -0
  81. data/spec/spec_helper.rb +3 -3
  82. metadata +67 -57
  83. data/.eslintrc +0 -213
  84. data/Rakefile +0 -8
  85. data/spec/dotdir/blast_2.4.0/blastn/TBLASTN_XML_2.4.0.xml +0 -1181
  86. data/spec/dotdir/blast_2.5.0/blastn/BLASTN_LONG_XML_2.5.0.xml +0 -18813
  87. data/spec/import_spec_capybara_local.rb +0 -61
data/spec/sequences/alignment-4_hits.txt ADDED
@@ -0,0 +1,24 @@
1
+ >MH011443.1:1-123
2
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
3
+ >MH011443.1:1-123_alignment_gi|1486783306|gb|MH011443.1|:1-123
4
+ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5
+ >gi|1486783306|gb|MH011443.1|:1-123
6
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
7
+ >MH011443.1:1-123
8
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
9
+ >MH011443.1:1-123_alignment_gi|1484127332|gb|MG595992.1|:436-558
10
+ |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11
+ >gi|1484127332|gb|MG595992.1|:436-558
12
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
13
+ >MH011443.1:1-123
14
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
15
+ >MH011443.1:1-123_alignment_gi|1484127322|gb|MG595987.1|:436-558
16
+ |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17
+ >gi|1484127322|gb|MG595987.1|:436-558
18
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
19
+ >NM_001861.5:1-698
20
+ CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
21
+ >NM_001861.5:1-698_alignment_gi|974005291|ref|NM_001861.4|:129-826
22
+ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
23
+ >gi|974005291|ref|NM_001861.4|:129-826
24
+ CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
data/spec/sequences/alignment-4_hits_blastn.txt ADDED
@@ -0,0 +1,24 @@
1
+ >MH011443.1:1-123
2
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
3
+ >MH011443.1:1-123_alignment_gi|1484127332|gb|MG595992.1|:436-558
4
+ |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5
+ >gi|1484127332|gb|MG595992.1|:436-558
6
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
7
+ >MH011443.1:1-123
8
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCGTGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
9
+ >MH011443.1:1-123_alignment_gi|1484127330|gb|MG595991.1|:436-558
10
+ |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11
+ >gi|1484127330|gb|MG595991.1|:436-558
12
+ TGGGTTGATTCCACACCCCCGCCCGGCACCCGCGTCCGCGCCATGGCCATCTACAAGCAGTCACAGCACATGACGGAGGTTGTGAGGCGCTGCCCCCACCATGAGCGCTGCTCAGATAGCGAT
13
+ >NM_001861.5:1-692
14
+ CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC
15
+ >NM_001861.5:1-692_alignment_gi|38382822|gb|BC062437.1|:8-699
16
+ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17
+ >gi|38382822|gb|BC062437.1|:8-699
18
+ CTCTTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGACTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCACTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACC
19
+ >NM_001861.5:4-698
20
+ TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCATGAAAGTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
21
+ >NM_001861.5:4-698_alignment_gi|974005313|ref|NM_001318797.1|:1-691
22
+ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
23
+ >gi|974005313|ref|NM_001318797.1|:1-691
24
+ TTCCGGTCGCGGGACACCGGGTGTAGAGGGCGGTCGCGGCGGGCAGTGGCGGCAGAATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCTGTGTGTGTACGAGCTCAT----GTGTTGTGAAGAGCGAAGACTTTTCGCTCCCAGCTTATATGGATCGGCGTGACCACCCCTTGCCGGAGGTGGCCCATGTCAAGCACCTGTCTGCCAGCCAGAAGGCATTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCCATGGATGAGAAAGTCGAGTTGTATCGCATTAAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCGAACGAGTGGAAGACGGTTGTGGGCGGTGCCATGTTCTTCATCGGTTTCACCGCGCTCGTTATCATGTGGCAGAAGCACTATGTGTACGGCCCCCTCCCGCAAAGCTTTGACAAAGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGAACCCCATCCAGGGCTTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCATGCCTATTTACTGGAAACCTGTTATGCCAAACAGTTGTACCACTGCTAATAAATGACCAGTTTACCTGAAAC
data/spec/sequences/alignment-4_hits_blastp.txt ADDED
@@ -0,0 +1,24 @@
1
+ >sp|P04637|P53_HUMAN:1-393
2
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170394|ref|XP_018868681.1|:16-408
4
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
+ >gi|1099170394|ref|XP_018868681.1|:16-408
6
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
+ >sp|P04637|P53_HUMAN:1-393
8
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170400|ref|XP_018868682.1|:13-405
10
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
+ >gi|1099170400|ref|XP_018868682.1|:13-405
12
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
+ >sp|P13073|COX41_HUMAN:1-169
14
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|397500384|ref|XP_003820896.1|:7-175
16
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >gi|397500384|ref|XP_003820896.1|:7-175
18
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >sp|P13073|COX41_HUMAN:1-169
20
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|4502981|ref|NP_001852.1|:1-169
22
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
+ >gi|4502981|ref|NP_001852.1|:1-169
24
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_blastp_2.2.30.txt ADDED
@@ -0,0 +1,24 @@
1
+ >sp|P04637|P53_HUMAN:1-393
2
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|120407068|ref|NP_000537.3|:1-393
4
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
+ >gi|120407068|ref|NP_000537.3|:1-393
6
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
+ >sp|P04637|P53_HUMAN:1-393
8
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|1099170394|ref|XP_018868681.1|:16-408
10
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
+ >gi|1099170394|ref|XP_018868681.1|:16-408
12
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPTLNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
+ >sp|P13073|COX41_HUMAN:1-169
14
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|397500384|ref|XP_003820896.1|:7-175
16
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >gi|397500384|ref|XP_003820896.1|:7-175
18
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >sp|P13073|COX41_HUMAN:1-169
20
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|4502981|ref|NP_001852.1|:1-169
22
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
+ >gi|4502981|ref|NP_001852.1|:1-169
24
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_blastx.txt ADDED
@@ -0,0 +1,24 @@
1
+ >MH011443.1:1-123
2
+ WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
+ >MH011443.1:1-123_alignment_gi|42821410|dbj|BAD11806.1|:21-61
4
+ WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
5
+ >gi|42821410|dbj|BAD11806.1|:21-61
6
+ WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
7
+ >MH011443.1:1-123
8
+ WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
9
+ >MH011443.1:1-123_alignment_gi|157086935|gb|ABV21350.1|:21-61
10
+ WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
11
+ >gi|157086935|gb|ABV21350.1|:21-61
12
+ WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
13
+ >NM_001861.5:60-566
14
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >NM_001861.5:60-566_alignment_gi|38382823|gb|AAH62437.1|:1-169
16
+ ML TRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >gi|38382823|gb|AAH62437.1|:1-169
18
+ MLTTRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >NM_001861.5:60-566
20
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >NM_001861.5:60-566_alignment_gi|426383129|ref|XP_004058144.1|:1-169
22
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
+ >gi|426383129|ref|XP_004058144.1|:1-169
24
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_diamond_blastp.txt ADDED
@@ -0,0 +1,24 @@
1
+ >sp|P04637|P53_HUMAN:1-394
2
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
+ >sp|P04637|P53_HUMAN:1-394_alignment_sp|P04637|P53_HUMAN:1-393
4
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
+ >sp|P04637|P53_HUMAN:1-393
6
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
+ >sp|P04637|P53_HUMAN:1-394
8
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPXXXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
+ >sp|P04637|P53_HUMAN:1-394_alignment_sp|P56424|P53_MACMU:1-393
10
+ MEEPQSDPS+EPPLSQETFSDLWKLLPENNVLSPLPSQA+DDLMLSPDD+ QW TEDPGPDEAPRM EAAP XXXXXXXXXXXXXXXXXXXXXXSVPSQKTY GSYGFRLGFLHSGTAKSVTCTYSP LNKMFCQLAKTCPVQLWVDSTPPPG+RVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEY DDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEEN RKKGEP H+LPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEP GSRAHSSHLKSKKGQSTSRHKK MFKTEGPDSD
11
+ >sp|P56424|P53_MACMU:1-393
12
+ MEEPQSDPSIEPPLSQETFSDLWKLLPENNVLSPLPSQAVDDLMLSPDDLAQWLTEDPGPDEAPRMSEAAPPMXXXXXXXXXXXXXXXXXXXXXXSVPSQKTYHGSYGFRLGFLHSGTAKSVTCTYSPDLNKMFCQLAKTCPVQLWVDSTPPPGSRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYSDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENFRKKGEPCHQLPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPAGSRAHSSHLKSKKGQSTSRHKKFMFKTEGPDSD
13
+ >sp|P13073|COX41_HUMAN:1-170
14
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >sp|P13073|COX41_HUMAN:1-170_alignment_sp|P13073|COX41_HUMAN:1-169
16
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >sp|P13073|COX41_HUMAN:1-169
18
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >sp|P13073|COX41_HUMAN:1-170
20
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >sp|P13073|COX41_HUMAN:1-170_alignment_sp|P00423|COX41_BOVIN:1-169
22
+ MLATRVFSL+G+RAISTSVCVRAH SVVKSED++LP+Y+DRRD+PLP+VAHVK+LSASQKALKEKEKASWSSLS+DEKVELYR+KFKESFAEMNR +NEWKTVVG AMFFIGFTAL+++W+KHYVYGP+P +F++EWVAKQTKRMLDMKV PIQG ++KWDY+KNEWKK
23
+ >sp|P00423|COX41_BOVIN:1-169
24
+ MLATRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK
data/spec/sequences/alignment-4_hits_diamond_blastx.txt ADDED
@@ -0,0 +1,24 @@
1
+ >MH011443.1:1-124
2
+ WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
+ >MH011443.1:1-124_alignment_sp|Q95330|P53_RABIT:143-183
4
+ WVDSTPPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD
5
+ >sp|Q95330|P53_RABIT:143-183
6
+ WVDSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDSD
7
+ >MH011443.1:1-124
8
+ WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
9
+ >MH011443.1:1-124_alignment_sp|Q9WUR6|P53_CAVPO:144-184
10
+ WV+S PPPGTRVRA+AIYK+SQHMTEVVRRCPHHERCSDSD
11
+ >sp|Q9WUR6|P53_CAVPO:144-184
12
+ WVESPPPPGTRVRALAIYKKSQHMTEVVRRCPHHERCSDSD
13
+ >NM_001861.5:135-567
14
+ SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >NM_001861.5:135-567_alignment_sp|O46577|COX41_PANTR:1-144
16
+ SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >sp|O46577|COX41_PANTR:1-144
18
+ SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >NM_001861.5:135-567
20
+ SVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >NM_001861.5:135-567_alignment_sp|O46578|COX41_GORGO:1-144
22
+ SVVKSEDFSLPAYMDRRD+PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
+ >sp|O46578|COX41_GORGO:1-144
24
+ SVVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_tblastn.txt ADDED
@@ -0,0 +1,24 @@
1
+ >sp|P04637|P53_HUMAN:1-393
2
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|339813|gb|M14694.1|HUMTP53A:126-1304
4
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAP VAPAPA PTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
+ >gi|339813|gb|M14694.1|HUMTP53A:126-1304
6
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPRVAPAPATPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
+ >sp|P04637|P53_HUMAN:1-393
8
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|35209|emb|X02469.1|:136-1314
10
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
+ >gi|35209|emb|X02469.1|:136-1314
12
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
+ >sp|P13073|COX41_HUMAN:1-169
14
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|1311702|gb|M21575.1|HUMCOX4A:35-541
16
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >gi|1311702|gb|M21575.1|HUMCOX4A:35-541
18
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >sp|P13073|COX41_HUMAN:1-169
20
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|353681772|ref|NM_001251915.1|:64-570
22
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
+ >gi|353681772|ref|NM_001251915.1|:64-570
24
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_tblastn_2.2.30.txt ADDED
@@ -0,0 +1,24 @@
1
+ >sp|P04637|P53_HUMAN:1-393
2
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
3
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|35209|emb|X02469.1|:136-1314
4
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
5
+ >gi|35209|emb|X02469.1|:136-1314
6
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
7
+ >sp|P04637|P53_HUMAN:1-393
8
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
9
+ >sp|P04637|P53_HUMAN:1-393_alignment_gi|339815|gb|M14695.1|HUMTP53B:122-1300
10
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPA PTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
11
+ >gi|339815|gb|M14695.1|HUMTP53B:122-1300
12
+ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPATPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
13
+ >sp|P13073|COX41_HUMAN:1-169
14
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
15
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|1311702|gb|M21575.1|HUMCOX4A:35-541
16
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
17
+ >gi|1311702|gb|M21575.1|HUMCOX4A:35-541
18
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
19
+ >sp|P13073|COX41_HUMAN:1-169
20
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
21
+ >sp|P13073|COX41_HUMAN:1-169_alignment_gi|353681772|ref|NM_001251915.1|:64-570
22
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
23
+ >gi|353681772|ref|NM_001251915.1|:64-570
24
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK
data/spec/sequences/alignment-4_hits_tblastx.txt ADDED
@@ -0,0 +1,318 @@
1
+ >MH011443.1:1-123
2
+ WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
3
+ >MH011443.1:1-123_alignment_gi|1484127324|gb|MG595988.1|:436-558
4
+ WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
5
+ >gi|1484127324|gb|MG595988.1|:436-558
6
+ WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
7
+ >MH011443.1:2-121
8
+ RYLSSAHGGGSASQPPSCAVTACRWPRRGRGCRAGVWNQP
9
+ >MH011443.1:2-121_alignment_gi|1484127324|gb|MG595988.1|:437-556
10
+ RYLSSAHGGGSASQPPSCAVTACRWP RGRGCRAGVWNQP
11
+ >gi|1484127324|gb|MG595988.1|:437-556
12
+ RYLSSAHGGGSASQPPSCAVTACRWPWRGRGCRAGVWNQP
13
+ >MH011443.1:3-122
14
+ SLSEQRSWWGQRLTTSVMCCDCL*MATARTRVPGGGVEST
15
+ >MH011443.1:3-122_alignment_gi|1484127324|gb|MG595988.1|:438-557
16
+ SLSEQRSWWGQRLTTSVMCCDCL*MA ARTRVPGGGVEST
17
+ >gi|1484127324|gb|MG595988.1|:438-557
18
+ SLSEQRSWWGQRLTTSVMCCDCL*MAMARTRVPGGGVEST
19
+ >MH011443.1:3-86
20
+ G*FHTPARHPRPRRGHLQAVTAHDGGCE
21
+ >MH011443.1:3-86_alignment_gi|1484127324|gb|MG595988.1|:438-521
22
+ G*FHTPARHPRPR GHLQAVTAHDGGCE
23
+ >gi|1484127324|gb|MG595988.1|:438-521
24
+ G*FHTPARHPRPRHGHLQAVTAHDGGCE
25
+ >MH011443.1:80-121
26
+ L*GAAPTMSAAQIA
27
+ >MH011443.1:80-121_alignment_gi|1484127324|gb|MG595988.1|:515-556
28
+ L*GAAPTMSAAQIA
29
+ >gi|1484127324|gb|MG595988.1|:515-556
30
+ L*GAAPTMSAAQIA
31
+ >MH011443.1:1-123
32
+ WVDSTPPPGTRVRAVAIYKQSQHMTEVVRRCPHHERCSDSD
33
+ >MH011443.1:1-123_alignment_gi|1484127322|gb|MG595987.1|:436-558
34
+ WVDSTPPPGTRVRA+AIYKQSQHMTEVVRRCPHHERCSDSD
35
+ >gi|1484127322|gb|MG595987.1|:436-558
36
+ WVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
37
+ >MH011443.1:2-121
38
+ RYLSSAHGGGSASQPPSCAVTACRWPRRGRGCRAGVWNQP
39
+ >MH011443.1:2-121_alignment_gi|1484127322|gb|MG595987.1|:437-556
40
+ RYLSSAHGGGSASQPPSCAVTACRWP RGRGCRAGVWNQP
41
+ >gi|1484127322|gb|MG595987.1|:437-556
42
+ RYLSSAHGGGSASQPPSCAVTACRWPWRGRGCRAGVWNQP
43
+ >MH011443.1:3-122
44
+ SLSEQRSWWGQRLTTSVMCCDCL*MATARTRVPGGGVEST
45
+ >MH011443.1:3-122_alignment_gi|1484127322|gb|MG595987.1|:438-557
46
+ SLSEQRSWWGQRLTTSVMCCDCL*MA ARTRVPGGGVEST
47
+ >gi|1484127322|gb|MG595987.1|:438-557
48
+ SLSEQRSWWGQRLTTSVMCCDCL*MAMARTRVPGGGVEST
49
+ >MH011443.1:3-86
50
+ G*FHTPARHPRPRRGHLQAVTAHDGGCE
51
+ >MH011443.1:3-86_alignment_gi|1484127322|gb|MG595987.1|:438-521
52
+ G*FHTPARHPRPR GHLQAVTAHDGGCE
53
+ >gi|1484127322|gb|MG595987.1|:438-521
54
+ G*FHTPARHPRPRHGHLQAVTAHDGGCE
55
+ >MH011443.1:80-121
56
+ L*GAAPTMSAAQIA
57
+ >MH011443.1:80-121_alignment_gi|1484127322|gb|MG595987.1|:515-556
58
+ L*GAAPTMSAAQIA
59
+ >gi|1484127322|gb|MG595987.1|:515-556
60
+ L*GAAPTMSAAQIA
61
+ >NM_001861.5:293-697
62
+ SRVVSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEALCVRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLK
63
+ >NM_001861.5:293-697_alignment_gi|39645193|gb|BC021236.2|:272-676
64
+ SRVVSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEALCVRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLK
65
+ >gi|39645193|gb|BC021236.2|:272-676
66
+ SRVVSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEALCVRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLK
67
+ >NM_001861.5:22-306
68
+ GCRGRSRRAVAAECWLPGYLA*LASEQFPPLCVYELMKVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPAXXXXXXXXXPPGAASPWMRKSSCI
69
+ >NM_001861.5:22-306_alignment_gi|39645193|gb|BC021236.2|:1-285
70
+ GCRGRSRRAVAAECWLPGYLA*LASEQFPPLCVYELMKVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSSCI
71
+ >gi|39645193|gb|BC021236.2|:1-285
72
+ GCRGRSRRAVAAECWLPGYLA*LASEQFPPLCVYELMKVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSSCI
73
+ >NM_001861.5:60-695
74
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*
75
+ >NM_001861.5:60-695_alignment_gi|39645193|gb|BC021236.2|:39-674
76
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*
77
+ >gi|39645193|gb|BC021236.2|:39-674
78
+ MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*
79
+ >NM_001861.5:23-535
80
+ LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT*CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRYNSTFSSMERLLQEAFSFSFNAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS*ARTHTEVEIARLPTRLNTLVANILPPLPAATALYT
81
+ >NM_001861.5:23-535_alignment_gi|39645193|gb|BC021236.2|:2-514
82
+ LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT*CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRYNSTFSSMERLLQEAFSFSF+AFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS*ARTHTEVEIARLPTRLNTLVANILPPLPAATALYT
83
+ >gi|39645193|gb|BC021236.2|:2-514
84
+ LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT*CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRYNSTFSSMERLLQEAFSFSFSAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS*ARTHTEVEIARLPTRLNTLVANILPPLPAATALYT
85
+ >NM_001861.5:526-696
86
+ FR*TGHLLAVVQLFGITGFQ*IGMELHGGDXXXXXXXXRPASLTSSTRSFRSPTWRL
87
+ >NM_001861.5:526-696_alignment_gi|39645193|gb|BC021236.2|:505-675
88
+ FR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
89
+ >gi|39645193|gb|BC021236.2|:505-675
90
+ FR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
91
+ >NM_001861.5:276-518
92
+ DGVHLHVQHPLGLLGHPLFVKALREGAVHIVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAIQLDFLIHGE
93
+ >NM_001861.5:276-518_alignment_gi|39645193|gb|BC021236.2|:255-497
94
+ DGVHLHVQHPLGLLGHPLFVKALREGAVHIVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAIQLDFLIHGE
95
+ >gi|39645193|gb|BC021236.2|:255-497
96
+ DGVHLHVQHPLGLLGHPLFVKALREGAVHIVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAIQLDFLIHGE
97
+ >NM_001861.5:24-227
98
+ RQVLDMGHLRQGVVTPIHISWERKVFALHNTFMSSYTHRGGNCSLAN*AKYPGSQHSAATARRDRPLH
99
+ >NM_001861.5:24-227_alignment_gi|39645193|gb|BC021236.2|:3-206
100
+ RQVLDMGHLRQGVVTPIHISWERKVFALHNTFMSSYTHRGGNCSLAN*AKYPGSQHSAATARRDRPLH
101
+ >gi|39645193|gb|BC021236.2|:3-206
102
+ RQVLDMGHLRQGVVTPIHISWERKVFALHNTFMSSYTHRGGNCSLAN*AKYPGSQHSAATARRDRPLH
103
+ >NM_001861.5:573-695
104
+ SGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
105
+ >NM_001861.5:573-695_alignment_gi|39645193|gb|BC021236.2|:552-674
106
+ SGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
107
+ >gi|39645193|gb|BC021236.2|:552-674
108
+ SGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
109
+ >NM_001861.5:427-696
110
+ TMCTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPE
111
+ >NM_001861.5:427-696_alignment_gi|39645193|gb|BC021236.2|:406-675
112
+ TMCTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPE
113
+ >gi|39645193|gb|BC021236.2|:406-675
114
+ TMCTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPE
115
+ >NM_001861.5:47-175
116
+ QWRQNVGYQGI*PSWQASNFHLCVCTSS*KCCEERRLFAPSLY
117
+ >NM_001861.5:47-175_alignment_gi|39645193|gb|BC021236.2|:26-154
118
+ QWRQNVGYQGI*PSWQASNFHLCVCTSS*KCCEERRLFAPSLY
119
+ >gi|39645193|gb|BC021236.2|:26-154
120
+ QWRQNVGYQGI*PSWQASNFHLCVCTSS*KCCEERRLFAPSLY
121
+ >NM_001861.5:46-180
122
+ DPYKLGAKSLRSSQHFHELVHTQRWKLLACQLG*IPW*PTFCRHC
123
+ >NM_001861.5:46-180_alignment_gi|39645193|gb|BC021236.2|:25-159
124
+ DPYKLGAKSLRSSQHFHELVHTQRWKLLACQLG*IPW*PTFCRHC
125
+ >gi|39645193|gb|BC021236.2|:25-159
126
+ DPYKLGAKSLRSSQHFHELVHTQRWKLLACQLG*IPW*PTFCRHC
127
+ >NM_001861.5:611-697
128
+ FQVNWSFISSGTTVWHNRFPVNRHGVAWR
129
+ >NM_001861.5:611-697_alignment_gi|39645193|gb|BC021236.2|:590-676
130
+ FQVNWSFISSGTTVWHNRFPVNRHGVAWR
131
+ >gi|39645193|gb|BC021236.2|:590-676
132
+ FQVNWSFISSGTTVWHNRFPVNRHGVAWR
133
+ >NM_001861.5:376-468
134
+ TLCQSFAGGGRTHSASAT**XXXXXXXRTWH
135
+ >NM_001861.5:376-468_alignment_gi|39645193|gb|BC021236.2|:355-447
136
+ TLCQSFAGGGRTHSASAT**RAR*NR*RTWH
137
+ >gi|39645193|gb|BC021236.2|:355-447
138
+ TLCQSFAGGGRTHSASAT**RAR*NR*RTWH
139
+ >NM_001861.5:223-306
140
+ DTTRLSHPWRGCXXXXXXXXXXXSGWQT
141
+ >NM_001861.5:223-306_alignment_gi|39645193|gb|BC021236.2|:202-285
142
+ DTTRLSHPWRGCSRRPSPSPS+PSGWQT
143
+ >gi|39645193|gb|BC021236.2|:202-285
144
+ DTTRLSHPWRGCSRRPSPSPSVPSGWQT
145
+ >NM_001861.5:432-749
146
+ VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*NPL*SVL**YLNES*LKQ
147
+ >NM_001861.5:432-749_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8143-8460
148
+ VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*NPL*SVL**YLNES*LKQ
149
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8143-8460
150
+ VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK*EMLACACTCAWLCHRHATPCLFTGNLLCQTVVPLLINDQFT*NPL*SVL**YLNES*LKQ
151
+ >NM_001861.5:132-299
152
+ ESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVE
153
+ >NM_001861.5:132-299_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6342-6509
154
+ ESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVE
155
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6342-6509
156
+ ESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVE
157
+ >NM_001861.5:300-431
158
+ LYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHY
159
+ >NM_001861.5:300-431_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7139-7270
160
+ +YRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHY
161
+ >gi|2738491|gb|AF005889.1|HCOX4GN:7139-7270
162
+ VYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHY
163
+ >NM_001861.5:55-132
164
+ AECWLPGYLA*LASEQFPPLCVYELM
165
+ >NM_001861.5:55-132_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2610-2687
166
+ +ECWLPGYLA*LASEQFPPLCVYELM
167
+ >gi|2738491|gb|AF005889.1|HCOX4GN:2610-2687
168
+ SECWLPGYLA*LASEQFPPLCVYELM
169
+ >NM_001861.5:1-57
170
+ LFRSRDTGCRGRSRRAVAA
171
+ >NM_001861.5:1-57_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:1103-1159
172
+ LFRSRDTGCRGRSRRAVAA
173
+ >gi|2738491|gb|AF005889.1|HCOX4GN:1103-1159
174
+ LFRSRDTGCRGRSRRAVAA
175
+ >NM_001861.5:526-747
176
+ VLISFHLGIIKELITKGFR*TGHLLAVVQLFGITGFQ*IGMELHGGDXXXXXXXXRPASLTSSTRSFRSPTWRL
177
+ >NM_001861.5:526-747_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8237-8458
178
+ VLISFHLGIIKELITKGFR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
179
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8237-8458
180
+ VLISFHLGIIKELITKGFR*TGHLLAVVQLFGITGFQ*IGMELHGGDRARRRCRRRPASLTSSTRSFRSPTWRL
181
+ >NM_001861.5:131-301
182
+ NSTFSSMERLLQEAFSFSFNAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS
183
+ >NM_001861.5:131-301_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6341-6511
184
+ +STFSSMERLLQEAFSFSF+AFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS
185
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6341-6511
186
+ HSTFSSMERLLQEAFSFSFSAFWLADRCLTWATSGKGWSRRSI*AGSEKSSLFTTLS
187
+ >NM_001861.5:302-430
188
+ *CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRY
189
+ >NM_001861.5:302-430_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
190
+ *CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRY
191
+ >gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
192
+ *CFCHMITSAVKPMKNMAPPTTVFHSFEPLFISAKLSLNLMRY
193
+ >NM_001861.5:431-535
194
+ LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT
195
+ >NM_001861.5:431-535_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8142-8246
196
+ LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT
197
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8142-8246
198
+ LEAKPWMGFTFMSSILLVCLATHSLSKLCGRGPYT
199
+ >NM_001861.5:58-150
200
+ RSSQHFHELVHTQRWKLLACQLG*IPW*PTF
201
+ >NM_001861.5:58-150_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2613-2705
202
+ + S +HELVHTQRWKLLACQLG*IPW*PTF
203
+ >gi|2738491|gb|AF005889.1|HCOX4GN:2613-2705
204
+ KKSHTYHELVHTQRWKLLACQLG*IPW*PTF
205
+ >NM_001861.5:2-58
206
+ LPPLPAATALYTRCPATGR
207
+ >NM_001861.5:2-58_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:1104-1160
208
+ LPPLPAATALYTRCPATGR
209
+ >gi|2738491|gb|AF005889.1|HCOX4GN:1104-1160
210
+ LPPLPAATALYTRCPATGR
211
+ >NM_001861.5:433-747
212
+ CTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPETLCDQFFNDT*MKAN*N
213
+ >NM_001861.5:433-747_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8144-8458
214
+ CTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPETLCDQFFNDT*MKAN*N
215
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8144-8458
216
+ CTAPSRKALTKSGWPSRPRGCWT*R*TPSRA*PPSGTTKRTSGRSERCWPAPAPAPGSVTAMQLHAYLLETCYAKQLYHC**MTSLPETLCDQFFNDT*MKAN*N
217
+ >NM_001861.5:133-300
218
+ KVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPAXXXXXXXXXPPGAASPWMRKSS
219
+ >NM_001861.5:133-300_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6343-6510
220
+ KVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSS
221
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6343-6510
222
+ KVL*RAKTFRSQLIWIGVTTPCRRWPMSSTCLPARRH*RRRRRPPGAASPWMRKSS
223
+ >NM_001861.5:302-430
224
+ VSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEAL
225
+ >NM_001861.5:302-430_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
226
+ VSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEAL
227
+ >gi|2738491|gb|AF005889.1|HCOX4GN:7141-7269
228
+ VSH*VQGELC*DEQGLERVEDGCGRCHVLHRFHRARYHVAEAL
229
+ >NM_001861.5:56-130
230
+ QNVGYQGI*PSWQASNFHLCVCTSS
231
+ >NM_001861.5:56-130_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2611-2685
232
+ QNVGYQGI*PSWQASNFHLCVCTSS
233
+ >gi|2738491|gb|AF005889.1|HCOX4GN:2611-2685
234
+ QNVGYQGI*PSWQASNFHLCVCTSS
235
+ >NM_001861.5:573-749
236
+ LF*LAFI*VSLKN*SQRVSGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
237
+ >NM_001861.5:573-749_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8284-8460
238
+ LF*LAFI*VSLKN*SQRVSGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
239
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8284-8460
240
+ LF*LAFI*VSLKN*SQRVSGKLVIY*QWYNCLA*QVSSK*AWSCMAVTEPGAGAGAGQH
241
+ >NM_001861.5:303-431
242
+ IVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAI
243
+ >NM_001861.5:303-431_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:7142-7270
244
+ IVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAI
245
+ >gi|2738491|gb|AF005889.1|HCOX4GN:7142-7270
246
+ IVLLPHDNERGETDEEHGTAHNRLPLVRAPVHLSKALLELNAI
247
+ >NM_001861.5:132-227
248
+ RQVLDMGHLRQGVVTPIHISWERKVFALHNTF
249
+ >NM_001861.5:132-227_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6342-6437
250
+ RQVLDMGHLRQGVVTPIHISWERKVFALHNTF
251
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6342-6437
252
+ RQVLDMGHLRQGVVTPIHISWERKVFALHNTF
253
+ >NM_001861.5:432-518
254
+ DGVHLHVQHPLGLLGHPLFVKALREGAVH
255
+ >NM_001861.5:432-518_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8143-8229
256
+ DGVHLHVQHPLGLLGHPLFVKALREGAVH
257
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8143-8229
258
+ DGVHLHVQHPLGLLGHPLFVKALREGAVH
259
+ >NM_001861.5:57-131
260
+ MSSYTHRGGNCSLAN*AKYPGSQHS
261
+ >NM_001861.5:57-131_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2612-2686
262
+ MSSYTHRGGNCSLAN*AKYPGSQHS
263
+ >gi|2738491|gb|AF005889.1|HCOX4GN:2612-2686
264
+ MSSYTHRGGNCSLAN*AKYPGSQHS
265
+ >NM_001861.5:3-56
266
+ AATARRDRPLHPVSRDRK
267
+ >NM_001861.5:3-56_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:1105-1158
268
+ AATARRDRPLHPVSRDRK
269
+ >gi|2738491|gb|AF005889.1|HCOX4GN:1105-1158
270
+ AATARRDRPLHPVSRDRK
271
+ >NM_001861.5:223-300
272
+ TRLSHPWRGCXXXXXXXXXXXSGWQT
273
+ >NM_001861.5:223-300_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6433-6510
274
+ TRLSHPWRGCSRRPSPSPS+PSGWQT
275
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6433-6510
276
+ TRLSHPWRGCSRRPSPSPSVPSGWQT
277
+ >NM_001861.5:434-748
278
+ VRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLKPFVISSLMIPK*KLIKT
279
+ >NM_001861.5:434-748_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8145-8459
280
+ VRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLKPFVISSLMIPK*KLIKT
281
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8145-8459
282
+ VRPPPAKL*QRVGGQADQEDAGHEGEPHPGLSLQVGLRKERVEEVRDAGLRLHLRLALSPPCNSMPIYWKPVMPNSCTTANK*PVYLKPFVISSLMIPK*KLIKT
283
+ >NM_001861.5:60-131
284
+ MLATRVFSLVGKRAISTSVCVRAH
285
+ >NM_001861.5:60-131_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2615-2686
286
+ MLATRVFSLVGKRAISTSVCVRAH
287
+ >gi|2738491|gb|AF005889.1|HCOX4GN:2615-2686
288
+ MLATRVFSLVGKRAISTSVCVRAH
289
+ >NM_001861.5:134-175
290
+ KCCEERRLFAPSLY
291
+ >NM_001861.5:134-175_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6344-6385
292
+ KCCEERRLFAPSLY
293
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6344-6385
294
+ KCCEERRLFAPSLY
295
+ >NM_001861.5:611-748
296
+ CFN*LSFRYH*RTDHKGFQVNWSFISSGTTVWHNRFPVNRHGVAWR
297
+ >NM_001861.5:611-748_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8322-8459
298
+ CFN*LSFRYH*RTDHKGFQVNWSFISSGTTVWHNRFPVNRHGVAWR
299
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8322-8459
300
+ CFN*LSFRYH*RTDHKGFQVNWSFISSGTTVWHNRFPVNRHGVAWR
301
+ >NM_001861.5:56-136
302
+ LS*ARTHTEVEIARLPTRLNTLVANIL
303
+ >NM_001861.5:56-136_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:2611-2691
304
+ L *ARTHTEVEIARLPTRLNTLVANIL
305
+ >gi|2738491|gb|AF005889.1|HCOX4GN:2611-2691
306
+ LP*ARTHTEVEIARLPTRLNTLVANIL
307
+ >NM_001861.5:133-180
308
+ DPYKLGAKSLRSSQHF
309
+ >NM_001861.5:133-180_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:6343-6390
310
+ DPYKLGAKSLRSSQHF
311
+ >gi|2738491|gb|AF005889.1|HCOX4GN:6343-6390
312
+ DPYKLGAKSLRSSQHF
313
+ >NM_001861.5:433-468
314
+ TLCQSFAGGGRT
315
+ >NM_001861.5:433-468_alignment_gi|2738491|gb|AF005889.1|HCOX4GN:8144-8179
316
+ TLCQSFAGGGRT
317
+ >gi|2738491|gb|AF005889.1|HCOX4GN:8144-8179
318
+ TLCQSFAGGGRT