sequenceserver 1.1.0.beta10 → 1.1.0.beta11

data/public/shims/form-core.js

@@ -0,0 +1,3 @@
+/* */ 
+"format cjs";
+webshims.register("form-core",function(a,b,c,d,e,f){"use strict";b.capturingEventPrevented=function(b){if(!b._isPolyfilled){var c=b.isDefaultPrevented,d=b.preventDefault;b.preventDefault=function(){return clearTimeout(a.data(b.target,b.type+"DefaultPrevented")),a.data(b.target,b.type+"DefaultPrevented",setTimeout(function(){a.removeData(b.target,b.type+"DefaultPrevented")},30)),d.apply(this,arguments)},b.isDefaultPrevented=function(){return!(!c.apply(this,arguments)&&!a.data(b.target,b.type+"DefaultPrevented"))},b._isPolyfilled=!0}};var g=b.modules,h=b.support,i=function(b){return(a.prop(b,"validity")||{valid:1}).valid},j=function(){var c=["form-validation"];a(d).off(".lazyloadvalidation"),f.lazyCustomMessages&&(f.customMessages=!0,c.push("form-message")),b._getAutoEnhance(f.customDatalist)&&(f.fD=!0,c.push("form-datalist")),f.addValidators&&c.push("form-validators"),b.reTest(c)},k=function(){var c,e,g=a.expr[":"],j=/^(?:form|fieldset)$/i,k=function(b){var c=!1;return a(b).jProp("elements").each(function(){return!j.test(this.nodeName||"")&&(c=g.invalid(this))?!1:void 0}),c};if(a.extend(g,{"valid-element":function(b){return j.test(b.nodeName||"")?!k(b):!(!a.prop(b,"willValidate")||!i(b))},"invalid-element":function(b){return j.test(b.nodeName||"")?k(b):!(!a.prop(b,"willValidate")||i(b))},"required-element":function(b){return!(!a.prop(b,"willValidate")||!a.prop(b,"required"))},"user-error":function(b){return a.prop(b,"willValidate")&&a(b).getShadowElement().hasClass(f.iVal.errorClass||"user-error")},"optional-element":function(b){return!(!a.prop(b,"willValidate")||a.prop(b,"required")!==!1)}}),["valid","invalid","required","optional"].forEach(function(b){g[b]=a.expr[":"][b+"-element"]}),h.fieldsetdisabled&&!a('<fieldset disabled=""><input /><input /></fieldset>').find(":disabled").filter(":disabled").is(":disabled")&&(c=a.find.matches,e={":disabled":1,":enabled":1},a.find.matches=function(a,b){return e[a]?c.call(this,"*"+a,b):c.apply(this,arguments)},a.extend(g,{enabled:function(b){return"disabled"in b&&b.disabled===!1&&!a.find.matchesSelector(b,"fieldset[disabled] *")},disabled:function(b){return b.disabled===!0||"disabled"in b&&a.find.matchesSelector(b,"fieldset[disabled] *")}})),"unknown"==typeof d.activeElement){var l=g.focus;g.focus=function(){try{return l.apply(this,arguments)}catch(a){b.error(a)}return!1}}},l={noAutoCallback:!0,options:f},m=b.loader.addModule,n=function(a,c,d){j(),b.ready("form-validation",function(){a[c].apply(a,d)})},o="transitionDelay"in d.documentElement.style?"":" no-transition",p=b.cfg.wspopover,q=/</g,r=/>/g;m("form-validation",a.extend({d:["form-message"]},l)),m("form-validators",a.extend({},l)),h.formvalidation&&!b.bugs.bustedValidity&&b.capturingEvents(["invalid"],!0),a.expr.filters?k():b.ready("sizzle",k),b.triggerInlineForm=function(b,c){a(b).trigger(c)},p.position||p.position===!1||(p.position={at:"left bottom",my:"left top",collision:"fit flip"}),b.wsPopover={id:0,_create:function(){this.options=a.extend(!0,{},p,this.options),this.id=b.wsPopover.id++,this.eventns=".wsoverlay"+this.id,this.timers={},this.element=a('<div class="ws-popover'+o+'" tabindex="-1"><div class="ws-po-outerbox"><div class="ws-po-arrow"><div class="ws-po-arrowbox" /></div><div class="ws-po-box" /></div></div>'),this.contentElement=a(".ws-po-box",this.element),this.lastElement=a([]),this.bindElement(),this.element.data("wspopover",this)},options:{},content:function(a){this.contentElement.html(a)},bindElement:function(){var a=this,b=function(){a.stopBlur=!1};this.preventBlur=function(){a.stopBlur=!0,clearTimeout(a.timers.stopBlur),a.timers.stopBlur=setTimeout(b,9)},this.element.on({mousedown:this.preventBlur})},show:function(){n(this,"show",arguments)}},b.validityAlert={showFor:function(){n(this,"showFor",arguments)}},b.getContentValidationMessage=function(c,d,e){var f;b.errorbox&&b.errorbox.initIvalContentMessage&&b.errorbox.initIvalContentMessage(c);var g=(b.getOptions&&b.errorbox?b.getOptions(c,"errormessage",!1,!0):a(c).data("errormessage"))||c.getAttribute("x-moz-errormessage")||"";return e&&g[e]?g=g[e]:g&&(d=d||a.prop(c,"validity")||{valid:1},d.valid&&(g="")),"object"==typeof g&&(d=d||a.prop(c,"validity")||{valid:1},d.customError&&(f=a.data(c,"customMismatchedRule"))&&g[f]&&"string"==typeof g[f]?g=g[f]:d.valid||(a.each(d,function(a,b){return b&&"valid"!=a&&g[a]?(g=g[a],!1):void 0}),"object"==typeof g&&(d.typeMismatch&&g.badInput&&(g=g.badInput),d.badInput&&g.typeMismatch&&(g=g.typeMismatch)))),"object"==typeof g&&(g=g.defaultMessage),b.replaceValidationplaceholder&&(g=b.replaceValidationplaceholder(c,g)),g||""},b.refreshCustomValidityRules=a.noop,a.fn.getErrorMessage=function(c){var d="",e=this[0];return e&&(d=b.getContentValidationMessage(e,!1,c)||a.prop(e,"customValidationMessage")||(a.prop(e,"validationMessage")||"").replace(q,"&lt;").replace(r,"&gt;")),d},a.event.special.valuevalidation={setup:function(){b.error("valuevalidation was renamed to validatevalue!")}},a.event.special.validatevalue={setup:function(){var b=a(this).data()||a.data(this,{});"validatevalue"in b||(b.validatevalue=!0)}},a(d).on("focusin.lazyloadvalidation mousedown.lazyloadvalidation touchstart.lazyloadvalidation",function(a){"form"in a.target&&j()}),b.ready("WINDOWLOAD",j),g["form-number-date-ui"].loaded&&!f.customMessages&&(g["form-number-date-api"].test()||h.inputtypes.range&&h.inputtypes.color)&&b.isReady("form-number-date-ui",!0),b.ready("DOM",function(){d.querySelector(".ws-custom-file")&&b.reTest(["form-validation"])}),f.addValidators&&f.fastValidators&&b.reTest(["form-validators","form-validation"]),"complete"==d.readyState&&b.isReady("WINDOWLOAD",!0)});

data/public/shims/form-validation.js

@@ -0,0 +1,3 @@
+/* */ 
+"format cjs";
+webshims.register("form-validation",function(a,b,c,d,e,f){"use strict";function g(a){return a.name}function h(){if(!a.data(this,"wsCustomFile")){var b=Array.prototype.map,c=a(this),d=a('input[type="file"]',c),e=a(".ws-file-value",c),f=a.trim(e.html())||"&#160;",h=function(){var a=d.prop("files")||[],c=b.call(a,g).join(", ")||d.val();c?e.text(c):e.html(f)};a.data(this,"wsCustomFile",{showSelected:h}),a("button:not(.ws-capture-button)",c).attr("tabindex","-1"),d.on("change.webshim",h).each(h).jProp("form").on("reset",function(){setTimeout(h)}),n&&a('<div class="ws-coverfile" />').insertAfter(d).on("click.webshim",function(a){a.stopImmediatePropagation(),d.trigger("click")})}}var i="webkitURL"in c,j=b.support,k=j.formvalidation&&!b.bugs.bustedValidity,l=i&&k,m=navigator.userAgent,n=-1!=m.indexOf("MSIE"),o=l&&parseFloat((m.match(/Safari\/([\d\.]+)/)||["","999999"])[1],10),p=f.iVal,q=p.errorClass||(p.errorClass="user-error"),r=p.successClass||(p.successClass="user-success"),s="."+r+", ."+q,t=p.errorWrapperClass||(p.errorWrapperClass="ws-invalid"),u=p.successWrapperClass||(p.successWrapperClass="ws-success"),v=p.errorBoxClass||(p.errorBoxClass="ws-errorbox"),w=p.errorMessageClass||(p.errorMessageClass="ws-errormessage"),x=p.errorBoxWrapper||(p.errorBoxWrapper="div"),y=p.errorMessageWrapper||(p.errorMessageWrapper="p"),z={checkbox:1,radio:1},A=b.loader,B=A.addModule,C=a([]),D=function(){return!a.prop(this,"form")},E=b.modules,F=E["form-core"].getGroupElements||function(b){b=a(b);var c,e,f=C;return"radio"==b[0].type&&(e=b.prop("form"),c=b[0].name,f=c?e?a(e).jProp(c):a(d.getElementsByName(c)).filter(D):b,f=f.filter('[type="radio"]')),f},G=function(b,c){var d;return a.each(b,function(b,e){return e?(d=b+a.prop(c,"validationMessage"),!1):void 0}),d},H=function(a){var b;try{b=d.activeElement.name===a}catch(c){}return b},I={radio:1,checkbox:1,"select-one":1,"select-multiple":1,file:1,date:1,month:1,week:1,text:1,password:1,search:1,email:1,tel:1,url:1},J={time:1,date:1,month:1,datetime:1,week:1,"datetime-local":1},K={refreshvalidityui:1,updatevalidation:1},L="."+p.errorClass+", ."+p.successClass,M=function(c){if(p.sel){var d,e,f,g;if(c.target&&(d=a(c.target).getNativeElement()[0],f=a(d).getShadowElement(),"submit"!=d.type&&a.prop(d,"willValidate")&&("change"!=c.type||!(g=f.prop("type"))||I[g]))){e=a.data(d,"webshimsswitchvalidityclass");var h=function(){if(g||(g=f.prop("type")),!(l&&("change"==c.type||537.36>o)&&J[g]&&a.find.matchesSelector(c.target,":focus")||"focusout"==c.type&&"radio"==d.type&&H(d.name))){if("async"==b.refreshCustomValidityRules(d))return void a(d).one("updatevalidation.webshims",M);var e,h,i,j,k,m=a.prop(d,"validity");m.valid?f.hasClass(r)||(e=r,h=q,j="changedvaliditystate",i="changedvalid",z[d.type]&&d.checked&&F(d).not(d).removeClass(h).addClass(e).removeAttr("aria-invalid"),f.removeAttr("aria-invalid"),a.removeData(d,"webshimsinvalidcause")):(k=G(m,d),a.data(d,"webshimsinvalidcause")!=k&&(a.data(d,"webshimsinvalidcause",k),j="changedvaliditystate"),f.hasClass(q)||(e=q,h=r,z[d.type]&&!d.checked&&F(d).not(d).removeClass(h).addClass(e).attr("aria-invalid","true"),f.attr("aria-invalid","true"),i="changedinvalid")),e&&(f.addClass(e).removeClass(h),setTimeout(function(){a(d).trigger(i)})),j&&setTimeout(function(){a(d).trigger(j)}),a.removeData(d,"webshimsswitchvalidityclass")}};f.triggerHandler("wsallowinstantvalidation",[c])!==!1&&(e&&clearTimeout(e),K[c.type]?("refreshvalidityui"==c.type&&b.error("refreshvalidityui was renamed to updatevalidation"),h()):a.data(d,"webshimsswitchvalidityclass",setTimeout(h)))}}},N=function(){b.errorbox.reset(this)};"validityUIEvents"in f&&(b.error("validityUIEvents was renamed to iVal.events"),p.events=f.validityUIEvents),p.events="events"in p?p.events||"":"focusout change",p.events&&(p.events+=" "),p.fieldWrapper||(p.fieldWrapper=":not(span):not(label):not(em):not(strong):not(p):not(.ws-custom-file)"),E["form-core"].getGroupElements||(E["form-core"].getGroupElements=F),a(d.body||"html").on(p.events+"refreshvalidityui updatevalidation.webshims invalid",M).on("refreshvalidationui.webshims",function(b){a(b.target).getShadowElement().is(s)&&M({type:"updatevalidation",target:b.target})}).on("reset resetvalidation.webshims resetvalui",function(c){var d,e=a(c.target);"resetvalui"==c.type&&b.error("resetvalui was renamed to resetvalidation"),e.is("form, fieldset")&&("form"==e[0].nodeName.toLowerCase()&&(d=!e.is(p.sel)),e=e.jProp("elements")),e=e.filter(L).removeAttr("aria-invalid").removeClass(p.errorClass+" "+p.successClass).getNativeElement().each(function(){a.removeData(this,"webshimsinvalidcause")}),d||(d===!1?e.each(N):e.trigger("resetvalidityui.webshims"))});var O=function(){b.scrollRoot=a(i||"BackCompat"==d.compatMode?d.body:d.documentElement)},P="transitionDelay"in d.documentElement.style,Q={display:"inline-block",left:0,top:0,marginTop:0,marginLeft:0,marginRight:0,marginBottom:0},R={slide:{show:"slideDown",hide:"slideUp"},fade:{show:"fadeIn",hide:"fadeOut"},no:{show:"show",hide:"hide"}};O(),b.ready("DOM",O);var S=/right|left/g,T=function(a){return"left"==a?"right":"left"};b.getRelOffset=function(b,c,d){var e,f;return b=a(b),a.swap(b[0],Q,function(){var g;a.position&&d&&a.position.getScrollInfo?(d.of||(d.of=c),g="rtl"==a(d.of).css("direction"),d.isRtl||(d.isRtl=!1),d.isRtl!=g&&(d.my=(d.my||"center").replace(S,T),d.at=(d.at||"center").replace(S,T),d.isRtl=g),b[d.isRtl?"addClass":"removeClass"]("ws-is-rtl"),d.using=function(a,c){b.attr({"data-horizontal":c.horizontal,"data-vertical":c.vertical}),e=a},b.attr({"data-horizontal":"","data-vertical":"","data-my":d.my,"data-at":d.at}),b.position(d)):(e=a(c).offset(),f=b.offset(),e.top-=f.top,e.left-=f.left,e.top+=c.outerHeight())}),e},a.extend(b.wsPopover,{isInElement:function(b,c){a.isArray(b)||(b=[b]);var d,e,f,g=!1;for(d=0,e=b.length;e>d;d++)if(f=b[d],f&&f.jquery&&(f=f[0]),f&&(f==c||a.contains(f,c))){g=!0;break}return g},show:function(e){var f;if(!this.isVisible){var g=a.Event("wspopoverbeforeshow");if(this.element.trigger(g),!g.isDefaultPrevented()){this.isVisible=!0,!this._shadowAdded&&b.shadowClass&&(this.element.addClass(b.shadowClass),this._shadowAdded=!0),e=a(e||this.options.prepareFor).getNativeElement();var h=this,i=function(a){!h.options.hideOnBlur||h.stopBlur||h.isInElement([h.lastElement[0],e[0],h.element[0]],a.target)||h.hide()},j=a(e).getShadowElement(),k=function(a){clearTimeout(h.timers.repos),h.timers.repos=setTimeout(function(){h.position(j)},a&&"pospopover"==a.type?4:200)};this.clear(),this.element.css("display","none"),this.prepareFor(e,j),this.position(j),this.options.inline?(f=(R[this.options.inline]||R.slide).show,h.element[f]().trigger("wspopovershow")):(this.element.removeClass("ws-po-visible"),h.timers.show=setTimeout(function(){h.element.css("display",""),h.timers.show=setTimeout(function(){h.element.addClass("ws-po-visible").trigger("wspopovershow")},14)},4)),a(d.body).on("focusin"+this.eventns+" mousedown"+this.eventns,i).children(":not(script), :not(iframe), :not(noscript)").on("mousedown"+this.eventns,i),this.element.off("pospopover").on("pospopover",k),a(c).on("resize"+this.eventns+" pospopover"+this.eventns,k)}}},_getAutoAppendElement:function(){var b=/^(?:span|i|label|b|p|tr|thead|tbody|table|strong|em|ul|ol|dl|html)$/i;return function(c){for(var e,f=c[0],g=d.body;(f=f[e?"offsetParent":"parentNode"])&&1==f.nodeType&&f!=g;)e||b.test(f.nodeName)||(e=f),e&&"visible"!=a.css(f,"overflow")&&"static"!=a.css(f,"position")&&(e=!1);return a(e||g)}}(),prepareFor:function(b,c){var d,e,f=this,g={},h=a.extend(!0,{},this.options,b.jProp("form").data("wspopover")||{},b.data("wspopover"));this.lastOpts=h,this.lastElement=a(b).getShadowFocusElement(),this.prepared&&this.options.prepareFor||(e="element"==h.appendTo||h.inline&&"auto"==h.appendTo?c.parent():"auto"==h.appendTo?this._getAutoAppendElement(c):a(h.appendTo),this.prepared&&e[0]==this.element[0].parentNode||this.element.appendTo(e)),this.element.attr({"data-class":b.prop("className"),"data-id":b.prop("id")}),h.constrainWidth?(this.element.addClass("ws-popover-constrained-width"),g.minWidth=c.outerWidth()):(this.element.removeClass("ws-popover-constrained-width"),g.minWidth=""),h.inline?this.element.addClass("ws-popinline ws-po-visible"):this.element.removeClass("ws-popinline"),this.element.css(g),h.hideOnBlur&&(d=function(a){f.stopBlur?a.stopImmediatePropagation():f.hide()},f.timers.bindBlur=setTimeout(function(){f.lastElement.off(f.eventns).on("focusout"+f.eventns+" blur"+f.eventns,d),f.lastElement.getNativeElement().off(f.eventns)},10)),this.prepared=!0},clear:function(){a(c).off(this.eventns),a(d).off(this.eventns),a(d.body).off(this.eventns).children(":not(script), :not(iframe), :not(noscript)").off(this.eventns),this.element.off("transitionend"+this.eventns),this.stopBlur=!1,this.lastOpts=!1,a.each(this.timers,function(a,b){clearTimeout(b)})},hide:function(){var b,d=a.Event("wspopoverbeforehide");if(this.element.trigger(d),!d.isDefaultPrevented()&&this.isVisible){this.isVisible=!1;var e=this,f=function(b){b&&"transitionend"==b.type&&(b=b.originalEvent)&&b.target==e.element[0]&&"hidden"==e.element.css("visibility")||(e.element.off("transitionend"+e.eventns).css("display","none").attr({"data-id":"","data-class":"",hidden:"hidden"}),clearTimeout(e.timers.forcehide),a(c).off("resize"+e.eventns))};this.clear(),this.options.inline?(b=(R[this.options.inline]||R.slide).hide,this.element[b]()):(this.element.removeClass("ws-po-visible"),a(c).on("resize"+this.eventns,f),P&&this.element.off("transitionend"+this.eventns).on("transitionend"+this.eventns,f),e.timers.forcehide=setTimeout(f,P?600:40)),this.element.trigger("wspopoverhide")}},position:function(a){var c,d=this.lastOpts||this.options;d.inline||(c=b.getRelOffset(this.element.removeAttr("hidden"),a,(this.lastOpts||this.options).position),this.element.css(c))}}),b.validityAlert=function(){f.messagePopover.position=a.extend({},{at:"left bottom",my:"left top",collision:"none"},f.messagePopover.position||{});var c=b.objectCreate(b.wsPopover,e,f.messagePopover),d=c.hide.bind(c);return c.element.addClass("validity-alert").attr({role:"alert"}),a.extend(c,{hideDelay:5e3,showFor:function(b,c,e,f){b=a(b).getNativeElement(),this.clear(),this.hide(),f||(this.getMessage(b,c),this.show(b),this.hideDelay&&(this.timers.delayedHide=setTimeout(d,this.hideDelay))),e||this.setFocus(b)},setFocus:function(d){var e=a(d).getShadowFocusElement(),g=b.scrollRoot.scrollTop()+(f.viewportOffset||0),h=e.offset().top-(f.scrollOffset||30),i=function(){try{e[0].focus()}catch(a){}e[0].offsetWidth||e[0].offsetHeight||b.warn("invalid element seems to be hidden. Make element either visible or use disabled/readonly to bar elements from validation. With fieldset[disabled] a group of elements can be ignored! In case of select replacement see shims/form-combat.js to fix issue."),c.element.triggerHandler("pospopover")};g>h?b.scrollRoot.animate({scrollTop:h-5-(f.viewportOffset||0)},{queue:!1,duration:Math.max(Math.min(600,1.5*(g-h)),80),complete:i}):i()},getMessage:function(a,b){b||(b=a.getErrorMessage()),b?c.contentElement.html(b):this.hide()}}),c}(),p.fx&&R[p.fx]||(p.fx="slide"),a.fn[R[p.fx].show]||(p.fx="no");var U=0;b.errorbox={create:function(b,c){c||(c=this.getFieldWrapper(b));var d=a("."+v,c);return d.length||(d=a("<"+x+' class="'+v+'" hidden="hidden" style="display: none;" />'),c.append(d)),d.prop("id")||(U++,d.prop("id","errorbox-"+U)),c.data("errorbox",d),d},getFieldWrapper:function(c){var d;return d="function"==typeof p.fieldWrapper?p.fieldWrapper.apply(this,arguments):a(c).parent().closest(p.fieldWrapper),d.length||b.error("could not find fieldwrapper: "+p.fieldWrapper),d},_createContentMessage:function(){var c=function(){return!c.types[this.type]};c.types={hidden:1,image:1,button:1,reset:1,submit:1};var d={},e=function(a){return"-"+a.toLowerCase()},f=function(b){var c=a(b).data("errortype");return c||a.each(d,function(d,e){return a.find.matchesSelector(b,e)?(c=d,!1):void 0}),c||"defaultMessage"};return a.each(["customError","badInput","typeMismatch","rangeUnderflow","rangeOverflow","stepMismatch","tooLong","tooShort","patternMismatch","valueMissing"],function(a,b){var c=b.replace(/[A-Z]/,e);d[b]="."+c+", ."+b+", ."+b.toLowerCase()+', [data-errortype="'+b+'"]'}),function(d,e,g){var h=!1,i={};a(e).children().each(function(){var b=f(this);i[b]=a(this).html()}),a("input, select, textarea",g).filter(c).each(function(c,d){var e=a(d).data("errormessage")||{};"string"==typeof e&&(e={defaultMessage:e}),a.each(i,function(a,b){e[a]||(h=!0,e[a]=b)}),h&&a(d).data("errormessage",e),b.getOptions&&b.getOptions(d,"errormessage",!1,!0)})}}(),initIvalContentMessage:function(b){var c;p.sel&&(c=a.prop(b,"form"))&&a.find.matchesSelector(c,p.sel)&&this.get(b)},get:function(b,c){c||(c=this.getFieldWrapper(b));var d,e=c.data("errorbox");return"object"!=(d=typeof e)&&(e?"string"==d&&(e=a("#"+e),c.data("errorbox",e,c)):e=this.create(b,c),this._createContentMessage(b,e,c)),e},addSuccess:function(b,c){var d=a.prop(b,"type"),e=function(){var e=z[d]?a.prop(b,"checked"):a(b).val();c[e?"addClass":"removeClass"](u)},f=I[d]?"change":"blur";a(b).off(".recheckvalid").on(f+".recheckinvalid",e),e()},hideError:function(b,c){var d,e,f,g=this.getFieldWrapper(b);return c||(d=a("input:invalid, select:invalid, 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data/public/shims/plugins/jquery.ui.position.js

@@ -0,0 +1,13 @@
+/* */ 
+"format cjs";
+/*!
+ * jQuery UI Position 1.11.0
+ * http://jqueryui.com
+ *
+ * Copyright 2014 jQuery Foundation and other contributors
+ * Released under the MIT license.
+ * http://jquery.org/license
+ *
+ * http://api.jqueryui.com/position/
+ */
+!function(a){a(window.webshims&&window.webshims.$||jQuery)}(function(a){return function(){function b(a,b,c){return[parseFloat(a[0])*(n.test(a[0])?b/100:1),parseFloat(a[1])*(n.test(a[1])?c/100:1)]}function c(b,c){return parseInt(a.css(b,c),10)||0}function d(b){var c=b[0];return 9===c.nodeType?{width:b.width(),height:b.height(),offset:{top:0,left:0}}:a.isWindow(c)?{width:b.width(),height:b.height(),offset:{top:b.scrollTop(),left:b.scrollLeft()}}:c.preventDefault?{width:0,height:0,offset:{top:c.pageY,left:c.pageX}}:{width:b.outerWidth(),height:b.outerHeight(),offset:b.offset()}}a.ui=a.ui||{};var e,f,g=Math.max,h=Math.abs,i=Math.round,j=/left|center|right/,k=/top|center|bottom/,l=/[\+\-]\d+(\.[\d]+)?%?/,m=/^\w+/,n=/%$/,o=a.fn.position;a.position={scrollbarWidth:function(){if(void 0!==e)return e;var b,c,d=a("<div style='display:block;position:absolute;width:50px;height:50px;overflow:hidden;'><div style='height:100px;width:auto;'></div></div>"),f=d.children()[0];return 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data/public/shims/styles/shim.css

@@ -0,0 +1 @@
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data/spec/database/ox_parse_error/query.fa

@@ -0,0 +1 @@
+SWSVLVVKRKPQNVS*THHPTPDNSRR

data/spec/database/ox_parse_error/rand1.fa

@@ -0,0 +1,2 @@
+>random_sequence
+CATGGAGTGTCCTAGTAGTAAAACGAAAACCCCAGAACGTTTCTTAGACTCACCACCCCACCCCTGACAACTCCCGTAGG

data/spec/database/ox_parse_error/rand1.fa.nhd

@@ -0,0 +1 @@
+16084494740

data/spec/database/ox_parse_error/rand1.fa.nsd

@@ -0,0 +1,2 @@
+lcl|random_sequence0
+random_sequence0

data/spec/database/ox_parse_error/rand2.fa

@@ -0,0 +1,2 @@
+>random_sequence
+TCGATTAAAATAAAGCTTGTCATGGAGTGTCCTAGTAGTAAAACGAAAACCCCAGAACGTTTCTTAGACTCACCACCCCACCCCTGACAACTCCCGTAGG

data/spec/database/ox_parse_error/rand2.fa.nhd

@@ -0,0 +1 @@
+33143875060

data/spec/database/ox_parse_error/rand2.fa.nsd

@@ -0,0 +1,2 @@
+lcl|random_sequence0
+random_sequence0

data/spec/database/ox_parse_error_unique_ids/query.fa

@@ -0,0 +1 @@
+SWSVLVVKRKPQNVS*THHPTPDNSRR

data/spec/database/ox_parse_error_unique_ids/rand1.fa

@@ -0,0 +1,2 @@
+>random_sequence1
+CATGGAGTGTCCTAGTAGTAAAACGAAAACCCCAGAACGTTTCTTAGACTCACCACCCCACCCCTGACAACTCCCGTAGG

data/spec/database/ox_parse_error_unique_ids/rand1.fa.nhd

@@ -0,0 +1 @@
+16084494740

data/spec/database/ox_parse_error_unique_ids/rand1.fa.nsd

@@ -0,0 +1,2 @@
+lcl|random_sequence10
+random_sequence10

data/spec/database/ox_parse_error_unique_ids/rand2.fa

@@ -0,0 +1,2 @@
+>random_sequence2
+TCGATTAAAATAAAGCTTGTCATGGAGTGTCCTAGTAGTAAAACGAAAACCCCAGAACGTTTCTTAGACTCACCACCCCACCCCTGACAACTCCCGTAGG

data/spec/database/ox_parse_error_unique_ids/rand2.fa.nhd

@@ -0,0 +1 @@
+33143875060

data/spec/database/ox_parse_error_unique_ids/rand2.fa.nsd

@@ -0,0 +1,2 @@
+lcl|random_sequence20
+random_sequence20

data/spec/database/pipe_in_seqid/pipe_in_seqid.fa

@@ -0,0 +1,6 @@
+>PWVi6_TR80574|c0_g1_i1 len=350 path=[655:0-349] [-1, 655, -2]
+CGAGGATCCTTTGTCCTTATCAATGGCAAATAATGTCATTTGTCATTTATTTATTCCTTTGAAAGGAGTTGAAAGGACGA
+TAGGAATAATAAATAAATCTAGGAATTCTTTTCTTTATCAGAATAGATGAACCAACGTCTCCAAATTATGCGTTTGAGGC
+TCTTGACAAAAATCAAGAAAAGTTGGCAGTTTTCAACAATTTAAAAATTCGTTTTTAAAATCAAGAAATTACAAAAAATG
+GTGAATTCTATAATTAATAAAATGTGAAGGAGATTATGAAACAGAATTTTGGTGAAGCAGAGTGTTTAATTTATACTTAA
+AGGAAATATTTTTAGTTGATGAACTGAAAG

data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd

@@ -0,0 +1 @@
+41854911120

data/spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd

@@ -0,0 +1,2 @@
+lcl|pwvi6_tr80574|c0_g1_i10
+pwvi6_tr80574|c0_g1_i10

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: sequenceserver
 version: !ruby/object:Gem::Version
-  version: 1.1.0.beta10
+  version: 1.1.0.beta11
 platform: ruby
 authors:
 - Anurag Priyam
@@ -11,7 +11,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-06-19 00:00:00.000000000 Z
+date: 2018-07-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: sinatra
@@ -255,6 +255,7 @@ files:
 - ".rubocop.yml"
 - ".travis.yml"
 - COPYRIGHT.txt
+- Dockerfile
 - LICENSE.txt
 - LICENSE/Apache.txt
 - LICENSE/d3.txt
@@ -262,7 +263,6 @@ files:
 - Rakefile
 - bin/sequenceserver
 - config.ru
-- docker/Dockerfile
 - lib/sequenceserver.rb
 - lib/sequenceserver/api_errors.rb
 - lib/sequenceserver/blast.rb
@@ -328,7 +328,10 @@ files:
 - public/js/visualisation_helpers.js
 - public/sequenceserver-report.min.js
 - public/sequenceserver-search.min.js
-- public/shims
+- public/shims/form-core.js
+- public/shims/form-validation.js
+- public/shims/plugins/jquery.ui.position.js
+- public/shims/styles/shim.css
 - public/vendor/.dependencies.json
 - public/vendor/.loaderversions
 - public/vendor/github/components/jquery@2.1.4.js
@@ -3697,6 +3700,53 @@ files:
 - spec/database/funky_sequences/funky_na_sequences.fa.nsd
 - spec/database/funky_sequences/funky_na_sequences.fa.nsi
 - spec/database/funky_sequences/funky_na_sequences.fa.nsq
+- spec/database/ox_parse_error/query.fa
+- spec/database/ox_parse_error/rand1.fa
+- spec/database/ox_parse_error/rand1.fa.nhd
+- spec/database/ox_parse_error/rand1.fa.nhi
+- spec/database/ox_parse_error/rand1.fa.nhr
+- spec/database/ox_parse_error/rand1.fa.nin
+- spec/database/ox_parse_error/rand1.fa.nog
+- spec/database/ox_parse_error/rand1.fa.nsd
+- spec/database/ox_parse_error/rand1.fa.nsi
+- spec/database/ox_parse_error/rand1.fa.nsq
+- spec/database/ox_parse_error/rand2.fa
+- spec/database/ox_parse_error/rand2.fa.nhd
+- spec/database/ox_parse_error/rand2.fa.nhi
+- spec/database/ox_parse_error/rand2.fa.nhr
+- spec/database/ox_parse_error/rand2.fa.nin
+- spec/database/ox_parse_error/rand2.fa.nog
+- spec/database/ox_parse_error/rand2.fa.nsd
+- spec/database/ox_parse_error/rand2.fa.nsi
+- spec/database/ox_parse_error/rand2.fa.nsq
+- spec/database/ox_parse_error_unique_ids/query.fa
+- spec/database/ox_parse_error_unique_ids/rand1.fa
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nhd
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nhi
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nhr
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nin
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nog
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nsd
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nsi
+- spec/database/ox_parse_error_unique_ids/rand1.fa.nsq
+- spec/database/ox_parse_error_unique_ids/rand2.fa
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nhd
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nhi
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nhr
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nin
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nog
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nsd
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nsi
+- spec/database/ox_parse_error_unique_ids/rand2.fa.nsq
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhd
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhi
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nhr
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nin
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nog
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsd
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsi
+- spec/database/pipe_in_seqid/pipe_in_seqid.fa.nsq
 - spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhd
 - spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhi
 - spec/database/sample/genome/Solenopsis_invicta/Solenopsis_invicta_gnG_subset.fasta.nhr

data/docker/Dockerfile

@@ -1,20 +0,0 @@
-# SequenceServer
-#
-# Intuitive local web frontend for the BLAST bioinformatics tool http://www.sequenceserver.com
-#
-# Contact:
-#   Anurag Priyam (architect) <anurag08priyam@gmail.com> <twitter.com/yeban>
-#   Yannick Wurm  (PI) <yannickwurm@gmail.com> <twitter.com/yannick__>
-#   Mailing list / forum <https://groups.google.com/forum/#!forum/sequenceserver>
-#
-# VERSION 1.0.0
-
-FROM ubuntu:16.04
-MAINTAINER Bruno Vieira <mail@bmpvieira.com>
-
-LABEL Description="Intuitive local web frontend for the BLAST bioinformatics tool http://www.sequenceserver.com" Version="1.0.0"
-
-RUN apt-get update
-RUN apt-get install -y build-essential ruby ruby-dev ncbi-blast+
-RUN gem install sequenceserver
-CMD sequenceserver -d /db

data/public/fonts/FontAwesome.otf

@@ -1 +0,0 @@
-../vendor/npm/font-awesome@4.4.0/fonts/FontAwesome.otf

data/public/fonts/fontawesome-webfont.eot

@@ -1 +0,0 @@
-../vendor/npm/font-awesome@4.4.0/fonts/fontawesome-webfont.eot

data/public/fonts/fontawesome-webfont.svg

@@ -1 +0,0 @@
-../vendor/npm/font-awesome@4.4.0/fonts/fontawesome-webfont.svg

data/public/fonts/fontawesome-webfont.ttf

@@ -1 +0,0 @@
-../vendor/npm/font-awesome@4.4.0/fonts/fontawesome-webfont.ttf

data/public/fonts/fontawesome-webfont.woff

@@ -1 +0,0 @@
-../vendor/npm/font-awesome@4.4.0/fonts/fontawesome-webfont.woff

data/public/fonts/fontawesome-webfont.woff2

@@ -1 +0,0 @@
-../vendor/npm/font-awesome@4.4.0/fonts/fontawesome-webfont.woff2

data/public/shims

@@ -1 +0,0 @@
-vendor/npm/webshim@1.15.8/js-webshim/minified/shims