sequenceserver 1.0.0 → 1.0.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 0d81c2f980d96a1437cabb9947ba8fe1aeb61fb0
-  data.tar.gz: 8a4e40d3fa21b6abfecf76ec09ca97133c4f1008
+  metadata.gz: ede45d919b1b13420e3a4e8608207b5ad24cbc7d
+  data.tar.gz: 6f23c34621aea3843e40eeabf132b1b7eff90301
 SHA512:
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+  metadata.gz: ef78150debeedd31768ab6ce38e2057189c9e656a3e70a8a8af7c4051f1873a798920edf35f6a649976b859ec95a759839937a2e6f11f8388077babce2704e9a
+  data.tar.gz: a3af0203dd219c8ba00a808b24740bcddedcf3ed10312279e3f8e49d234e264ff436167626ea0c23f6bbfedb84914c2563ba6c665dbe8b07520aaa4808a76986

data/.rubocop.yml

@@ -25,10 +25,6 @@ Metrics/BlockNesting:
     #   Fix in bin/sequenceserver and re-enable.
     - 'bin/sequenceserver'
 
-Lint/Eval:
-  # Used only once. Is rather safe.
-  Enabled: false
-
 Style/UnlessElse:
   # TODO:
   #   Fix in bin/sequenceserver and re-enable.

data/bin/sequenceserver

@@ -109,10 +109,8 @@ BANNER
 
     run do
       if version?
-        gemspec_file = File.join(File.dirname(__FILE__), '..',
-                                 'sequenceserver.gemspec')
-        gemspec = eval File.read gemspec_file
-        puts gemspec.version
+        require 'sequenceserver/version'
+        puts SequenceServer::VERSION
         exit
       end
 

data/lib/sequenceserver.rb

@@ -1,6 +1,7 @@
 require 'English'
 require 'thin'
 
+require 'sequenceserver/version'
 require 'sequenceserver/exceptions'
 require 'sequenceserver/config'
 require 'sequenceserver/logger'

data/lib/sequenceserver/version.rb

@@ -0,0 +1,4 @@
+# Define version number.
+module SequenceServer
+  VERSION = '1.0.1'
+end

data/public/js/sequenceserver.js

@@ -68,7 +68,7 @@ $.webshims.polyfill('forms');
             var modal = $(this).data('bs.modal');
             if (modal) {
                 active = modal.isShown;
-                return !active
+                return !active;
             }
         });
         return active;
@@ -593,7 +593,7 @@ $(document).ready(function(){
             var title = "Click to BLAST or press Ctrl+Enter.";
             if ($(this).siblings().length !== 0) {
                 title += " Click dropdown button on the right for other" +
-                         " BLAST algorithms that can be used."
+                         " BLAST algorithms that can be used.";
             }
             return title;
         },
@@ -601,7 +601,7 @@ $(document).ready(function(){
             show: 1000,
             hide: 0
         }
-    })
+    });
 
     // Handles the form submission when Ctrl+Enter is pressed anywhere on page
     $(document).bind("keydown", function (e) {

data/sequenceserver.gemspec

@@ -1,7 +1,9 @@
+require File.expand_path('lib/sequenceserver/version.rb',
+                         File.dirname(__FILE__))
 Gem::Specification.new do |s|
   # meta
   s.name        = 'sequenceserver'
-  s.version     = '1.0.0'
+  s.version     = SequenceServer::VERSION
   s.authors     = ['Anurag Priyam', 'Ben J Woodcroft',
                    'Vivek Rai', 'Yannick Wurm']
   s.email       = ['anurag08priyam@gmail.com', 'b.woodcroft@uq.edu.au']
@@ -27,7 +29,8 @@ DESC
   s.add_development_dependency('rubocop',         '~> 0.28', '>= 0.28.0')
   s.add_development_dependency('capybara',        '~> 2.4',  '>= 2.4.4')
   s.add_development_dependency('capybara-webkit', '~> 1.3',  '>= 1.3.0')
-  s.add_development_dependency('codeclimate-test-reporter')
+  s.add_development_dependency('codeclimate-test-reporter',
+                               '~> 0.4', '>= 0.4.7')
 
   # gem
   s.files         = `git ls-files`.split

data/views/search.erb

@@ -38,7 +38,7 @@
         href="http://sequenceserver.com" target="_blank">
         SequenceServer
         <small>
-          BLAST searching made easy!
+          <%= SequenceServer::VERSION %>
         </small>
       </a>
       <ul class="nav navbar-nav navbar-right hover-reset focus-reset">

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: sequenceserver
 version: !ruby/object:Gem::Version
-  version: 1.0.0
+  version: 1.0.1
 platform: ruby
 authors:
 - Anurag Priyam
@@ -237,16 +237,22 @@ dependencies:
   name: codeclimate-test-reporter
   requirement: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.4'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 0.4.7
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.4'
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 0.4.7
 description: |
   SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user
   interface for use locally or over the web.
@@ -292,6 +298,7 @@ files:
 - lib/sequenceserver/routes.rb
 - lib/sequenceserver/search.rb
 - lib/sequenceserver/sequence.rb
+- lib/sequenceserver/version.rb
 - package.json
 - public/css/bootstrap.min.css
 - public/css/custom.css