sequenceserver 1.0.0.pre.3 → 1.0.0.pre.4
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- checksums.yaml +4 -4
- data/README.md +47 -4
- data/lib/sequenceserver.rb +3 -177
- data/lib/sequenceserver/blast.rb +4 -59
- data/lib/sequenceserver/blast/constants.rb +34 -0
- data/lib/sequenceserver/blast/formatter.rb +69 -0
- data/lib/sequenceserver/blast/hit.rb +33 -12
- data/lib/sequenceserver/blast/hsp.rb +4 -6
- data/lib/sequenceserver/blast/query.rb +6 -8
- data/lib/sequenceserver/blast/report.rb +94 -77
- data/lib/sequenceserver/config.rb +1 -0
- data/lib/sequenceserver/exceptions.rb +1 -1
- data/lib/sequenceserver/links.rb +14 -21
- data/lib/sequenceserver/routes.rb +163 -0
- data/lib/sequenceserver/search.rb +19 -0
- data/lib/sequenceserver/sequence.rb +135 -30
- data/public/css/custom.css +17 -8
- data/public/dist/css/sequenceserver.min.css +1 -1
- data/public/dist/css/sequenceserver.min.css.gz +0 -0
- data/public/dist/js/sequenceserver.min.js +1 -1
- data/public/dist/js/sequenceserver.min.js.gz +0 -0
- data/public/js/sequenceserver.js +66 -32
- data/sequenceserver.gemspec +1 -1
- data/views/result.erb +8 -8
- data/views/search.erb +12 -3
- metadata +6 -2
data/views/search.erb
CHANGED
@@ -41,6 +41,16 @@
|
|
41
41
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BLAST searching made easy!
|
42
42
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</small>
|
43
43
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</a>
|
44
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+
<ul class="nav navbar-nav navbar-right hover-reset focus-reset">
|
45
|
+
<li>
|
46
|
+
<a
|
47
|
+
target="_blank"
|
48
|
+
href="http://www.sequenceserver.com/#support">
|
49
|
+
<i class="fa fa-comment-o"></i>
|
50
|
+
Help & Support
|
51
|
+
</a>
|
52
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+
</li>
|
53
|
+
</ul>
|
44
54
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</div>
|
45
55
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</div>
|
46
56
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|
@@ -140,7 +150,7 @@
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|
140
150
|
rows="10"
|
141
151
|
autofocus="true"
|
142
152
|
spellcheck="false"
|
143
|
-
placeholder="Paste query sequence(s) or drag file containing query sequence(s) here ..." ></textarea>
|
153
|
+
placeholder="Paste query sequence(s) or drag file containing query sequence(s) in FASTA format here ..." ></textarea>
|
144
154
|
</div>
|
145
155
|
</div>
|
146
156
|
</div>
|
@@ -244,8 +254,7 @@
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|
244
254
|
class="btn-group btn-block" id="methods">
|
245
255
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<button
|
246
256
|
type="submit"
|
247
|
-
id="method" class="btn btn-primary col-md-12"
|
248
|
-
title="Use Ctrl+Enter as shortcut.">
|
257
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+
id="method" class="btn btn-primary col-md-12">
|
249
258
|
blast
|
250
259
|
</button>
|
251
260
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</div>
|
metadata
CHANGED
@@ -1,7 +1,7 @@
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|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: sequenceserver
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.0.0.pre.
|
4
|
+
version: 1.0.0.pre.4
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Anurag Priyam
|
@@ -11,7 +11,7 @@ authors:
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|
11
11
|
autorequire:
|
12
12
|
bindir: bin
|
13
13
|
cert_chain: []
|
14
|
-
date: 2015-02-
|
14
|
+
date: 2015-02-20 00:00:00.000000000 Z
|
15
15
|
dependencies:
|
16
16
|
- !ruby/object:Gem::Dependency
|
17
17
|
name: thin
|
@@ -246,7 +246,9 @@ files:
|
|
246
246
|
- config.ru
|
247
247
|
- lib/sequenceserver.rb
|
248
248
|
- lib/sequenceserver/blast.rb
|
249
|
+
- lib/sequenceserver/blast/constants.rb
|
249
250
|
- lib/sequenceserver/blast/exceptions.rb
|
251
|
+
- lib/sequenceserver/blast/formatter.rb
|
250
252
|
- lib/sequenceserver/blast/hit.rb
|
251
253
|
- lib/sequenceserver/blast/hsp.rb
|
252
254
|
- lib/sequenceserver/blast/query.rb
|
@@ -256,6 +258,8 @@ files:
|
|
256
258
|
- lib/sequenceserver/exceptions.rb
|
257
259
|
- lib/sequenceserver/links.rb
|
258
260
|
- lib/sequenceserver/logger.rb
|
261
|
+
- lib/sequenceserver/routes.rb
|
262
|
+
- lib/sequenceserver/search.rb
|
259
263
|
- lib/sequenceserver/sequence.rb
|
260
264
|
- public/css/bootstrap.min.css
|
261
265
|
- public/css/custom.css
|