sequenceserver 0.8.9 → 1.0.0.pre.1

data/lib/sequenceserver/sinatralikeloggerformatter.rb

@@ -1,12 +0,0 @@
-module SequenceServer
-  # We change Logging format so that it is consistent with Sinatra's
-  class SinatraLikeLogFormatter < Logger::Formatter 
-    MyFormat = "[%s] %s  %s\n"
-    def initialize
-      self.datetime_format = "%Y-%m-%d %H:%M:%S" 
-    end
-    def call(severity, time, progname, msg)
-      MyFormat % [format_datetime(time), severity, msg2str(msg)]
-    end
-  end
-end

data/lib/sequenceserver/version.rb

@@ -1,9 +0,0 @@
-module SequenceServer
-
-  # Return version number of SequenceServer from the gemspec.  Version number
-  # is read from gemspec, which might fail on older versions of Bundler or
-  # RubyGems.  Return `nil` if version number couldn't be determined.
-  def self.version
-    Bundler.rubygems.loaded_specs('sequenceserver').version rescue nil
-  end
-end

data/public/css/beige.css.css

@@ -1,254 +0,0 @@
-body {
-	background-color: #2B3E42;
-	/*background: #3f4555;*/
-	font-family: Tahoma, Arial, sans-serif;
-}
-
-.container {
-	width: 800px;  
-	margin: 50px auto;
-	background-color: white;
-	border: 2px solid white;
-	border-radius: 10px;
-	-moz-border-radius: 10px;
-}
-
-h1 {
-    margin: 0px;
-	padding: 0px;
-}
-
-.banner {
-	font-weight: bold;
-	background: #ebcd7b;
-	font-size: 300%;
-	font-family: Tahoma, Arial, sans-serif;
-	color: black;
-	padding: 2%;
-	margin-bottom: 2%;
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-}
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-.underbar { 
-	background-color: #ebcd7b; 
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-	margin: 2% 0 0 0;
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-.entryfield {
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-.entryfield textarea {
-	padding:0;
-	margin:0;
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-	height: 168px;
-	border-color:black;
-}
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-.blastmethods {
-	float					: right;
-	background				: #222222;
-	border					: none;
-	height                  :  150px;
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-	border-top-right-radius	: 10px;
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-
-	font-size					: 1.5em; 
-	font-family: Tahoma, Arial, sans-serif; 
-	color: black;
-	margin:0;
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-}
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-fieldset {
-	margin:0;
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-.horizontal {
-	margin: 2%;
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-.rounded {
-	border-radius  :10px;
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-}
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-.box {
-	background  : #D5E1DD;
-	/* background: -webkit-gradient(linear, left top, left bottom, from(#ccc), to(#000));   */
-
-	border      : none;
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-	padding     : 10px;
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-	font-family : Tahoma, Arial, sans-serif;
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-.databases {
-	width       :46.5%;
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-.nucleotide {
-	float    :left;
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-.protein {
-	float    : right;
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-.radiobutton{
-	margin: 9px 5px 0px 0px;
-	padding: 0;
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-}
-.dbcheckbox {   /* within each "database box" */
-float:left;
-clear:both;
-margin: 5px 10px 0 0;
-padding: 0;
-}
-.dbdescription {
-	float:left;
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-.advanced {
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-.greytext {
-  color: #A9A9A9;
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-.pointer {
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-.advanced pre {
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-.advanced input {
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-.submit_button {
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-.submit_button input {
-	width: 100%;
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-	background: -webkit-gradient(linear, left top, right bottom, from(#0066CC), to(#192D53));
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-	margin: 0 0 0 0;
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-.submit_button input:active {
-	color: #1f2126;
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-.submit_button input:hover {
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-	font-family: "Lucida Console", Lucida, monospace;
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-	border-radius  :10px;
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-a {
-    color: #b22222;
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data/public/css/bootstrap.dropdown.css

@@ -1,29 +0,0 @@
-/*!
- * Bootstrap v2.0.2
- *
- * Copyright 2012 Twitter, Inc
- * Licensed under the Apache License v2.0
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Designed and built with all the love in the world @twitter by @mdo and @fat.
- */
-.clearfix{*zoom:1;}.clearfix:before,.clearfix:after{display:table;content:"";}
-.clearfix:after{clear:both;}
-.hide-text{overflow:hidden;text-indent:100%;white-space:nowrap;}
-.input-block-level{display:block;width:100%;min-height:28px;-webkit-box-sizing:border-box;-moz-box-sizing:border-box;-ms-box-sizing:border-box;box-sizing:border-box;}
-.dropdown{position:relative;}
-.dropdown-toggle{*margin-bottom:-3px;}
-.dropdown-toggle:active,.open .dropdown-toggle{outline:0;}
-.caret{display:inline-block;width:0;height:0;vertical-align:top;border-left:4px solid transparent;border-right:4px solid transparent;border-top:4px solid #000000;opacity:0.3;filter:alpha(opacity=30);content:"";}
-.dropdown .caret{margin-top:8px;margin-left:2px;}
-.dropdown:hover .caret,.open.dropdown .caret{opacity:1;filter:alpha(opacity=100);}
-.dropdown-menu{position:absolute;top:100%;left:0;z-index:1000;float:left;display:none;min-width:160px;padding:4px 0;margin:0;list-style:none;background-color:#ffffff;border-color:#ccc;border-color:rgba(0, 0, 0, 0.2);border-style:solid;border-width:1px;-webkit-border-radius:0 0 5px 5px;-moz-border-radius:0 0 5px 5px;border-radius:0 0 5px 5px;-webkit-box-shadow:0 5px 10px rgba(0, 0, 0, 0.2);-moz-box-shadow:0 5px 10px rgba(0, 0, 0, 0.2);box-shadow:0 5px 10px rgba(0, 0, 0, 0.2);-webkit-background-clip:padding-box;-moz-background-clip:padding;background-clip:padding-box;*border-right-width:2px;*border-bottom-width:2px;}.dropdown-menu.pull-right{right:0;left:auto;}
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-.dropdown.open .dropdown-menu{display:block;}
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-.typeahead{margin-top:2px;-webkit-border-radius:4px;-moz-border-radius:4px;border-radius:4px;}

data/public/css/bootstrap.icons.css

@@ -1,155 +0,0 @@
-/*!
- * Bootstrap v2.0.3
- *
- * Copyright 2012 Twitter, Inc
- * Licensed under the Apache License v2.0
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Designed and built with all the love in the world @twitter by @mdo and @fat.
- */
-.clearfix{*zoom:1;}.clearfix:before,.clearfix:after{display:table;content:"";}
-.clearfix:after{clear:both;}
-.hide-text{font:0/0 a;color:transparent;text-shadow:none;background-color:transparent;border:0;}
-.input-block-level{display:block;width:100%;min-height:28px;-webkit-box-sizing:border-box;-moz-box-sizing:border-box;-ms-box-sizing:border-box;box-sizing:border-box;}
-[class^="icon-"],[class*=" icon-"]{display:inline-block;width:14px;height:14px;*margin-right:.3em;line-height:14px;vertical-align:text-top;background-image:url("../img/glyphicons-halflings.png");background-position:14px 14px;background-repeat:no-repeat;}[class^="icon-"]:last-child,[class*=" icon-"]:last-child{*margin-left:0;}
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