sequenceserver 0.8.3 → 0.8.4

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Files changed (29) hide show
  1. data/lib/blast.rb~ +200 -0
  2. data/lib/sequenceserver/database_formatter.rb~ +190 -0
  3. data/public/css/beige.css.css +254 -0
  4. data/public/css/beige.css~ +226 -0
  5. data/public/js/Scribl.min.js +53 -0
  6. data/public/js/sequenceserver.js~ +250 -0
  7. data/sequenceserver.gemspec +2 -2
  8. data/tests/database/nucleotide/head.fa +10 -0
  9. data/tests/database/nucleotide/head.faVno_parse.html +96 -0
  10. data/tests/database/nucleotide/head.faVparse.html +96 -0
  11. data/tests/database/nucleotide/headVno_parse.archive +151 -0
  12. data/tests/database/nucleotide/headVno_parse.archive.csv +1 -0
  13. data/tests/database/nucleotide/headVparse.archive +148 -0
  14. data/tests/database/nucleotide/headVparse.archive.csv +1 -0
  15. data/tests/database/nucleotide/no_parse.fa +5486 -0
  16. data/tests/database/nucleotide/no_parse.fa.nhr +0 -0
  17. data/tests/database/nucleotide/no_parse.fa.nin +0 -0
  18. data/tests/database/nucleotide/no_parse.fa.nsq +0 -0
  19. data/tests/database/nucleotide/no_parse.info +7 -0
  20. data/tests/database/nucleotide/parse.fa +5486 -0
  21. data/tests/database/nucleotide/parse.fa.nhr +0 -0
  22. data/tests/database/nucleotide/parse.fa.nin +0 -0
  23. data/tests/database/nucleotide/parse.fa.nog +0 -0
  24. data/tests/database/nucleotide/parse.fa.nsd +946 -0
  25. data/tests/database/nucleotide/parse.fa.nsi +0 -0
  26. data/tests/database/nucleotide/parse.fa.nsq +0 -0
  27. data/tests/database/nucleotide/parse.info +7 -0
  28. data/views/search.erb~ +164 -0
  29. metadata +56 -28
data/tests/database/nucleotide/no_parse.info ADDED
@@ -0,0 +1,7 @@
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+ Database: no_parse.fa
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+ 473 sequences; 287,752 total bases
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+
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+ Date: Sep 25, 2011 10:05 AM Longest sequence: 5,424 bases
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+
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+ Volumes:
7
+ /home/ben/forays/sequenceserver/tests/database/nucleotide/no_parse.fa