sequenceserver 0.7.9 → 0.8.0

metadata

@@ -1,61 +1,108 @@
---- !ruby/object:Gem::Specification
+--- !ruby/object:Gem::Specification 
 name: sequenceserver
-version: !ruby/object:Gem::Version
-  version: 0.7.9
+version: !ruby/object:Gem::Version 
+  hash: 63
   prerelease: 
+  segments: 
+  - 0
+  - 8
+  - 0
+  version: 0.8.0
 platform: ruby
-authors:
+authors: 
 - Anurag Priyam
 - Ben J Woodcroft
 - Yannick Wurm
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-04-11 00:00:00.000000000Z
-dependencies:
-- !ruby/object:Gem::Dependency
+
+date: 2012-06-05 00:00:00 +05:30
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
   name: bundler
-  requirement: &22947800 !ruby/object:Gem::Requirement
+  prerelease: false
+  requirement: &id001 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
-    - - ! '>='
-      - !ruby/object:Gem::Version
-        version: '0'
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
   type: :runtime
-  prerelease: false
-  version_requirements: *22947800
-- !ruby/object:Gem::Dependency
+  version_requirements: *id001
+- !ruby/object:Gem::Dependency 
   name: sinatra
-  requirement: &22947280 !ruby/object:Gem::Requirement
+  prerelease: false
+  requirement: &id002 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
-    - - ! '>='
-      - !ruby/object:Gem::Version
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 31
+        segments: 
+        - 1
+        - 2
+        - 0
         version: 1.2.0
   type: :runtime
-  prerelease: false
-  version_requirements: *22947280
-- !ruby/object:Gem::Dependency
+  version_requirements: *id002
+- !ruby/object:Gem::Dependency 
   name: ptools
-  requirement: &22946860 !ruby/object:Gem::Requirement
+  prerelease: false
+  requirement: &id003 !ruby/object:Gem::Requirement 
     none: false
-    requirements:
-    - - ! '>='
-      - !ruby/object:Gem::Version
-        version: '0'
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
   type: :runtime
+  version_requirements: *id003
+- !ruby/object:Gem::Dependency 
+  name: minitest
+  prerelease: false
+  requirement: &id004 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :development
+  version_requirements: *id004
+- !ruby/object:Gem::Dependency 
+  name: rack-test
   prerelease: false
-  version_requirements: *22946860
-description: ! 'SequenceServer lets you rapidly set up a BLAST+ server with an intuitive
-  user interface for use locally or over the web.
+  requirement: &id005 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :development
+  version_requirements: *id005
+description: |
+  SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web.
 
-'
 email: anurag08priyam@gmail.com
-executables:
+executables: 
 - sequenceserver
 extensions: []
+
 extra_rdoc_files: []
-files:
+
+files: 
 - lib/sequenceserver.rb
 - lib/sequenceserver/database_formatter.rb
 - lib/sequenceserver/sequencehelpers.rb
@@ -64,17 +111,34 @@ files:
 - lib/sequenceserver/sinatralikeloggerformatter.rb
 - lib/sequenceserver/blast.rb
 - lib/sequenceserver/database.rb
+- lib/sequenceserver/options.rb
 - views/search.erb
 - views/500.erb
+- views/_options.erb
+- public/img/glyphicons-halflings-white.png
+- public/img/glyphicons-halflings.png
 - public/favicon.ico
+- public/css/bootstrap.icons.css
+- public/css/bootstrap.modal.css
 - public/css/bootstrap.min.css
+- public/css/bootstrap.dropdown.css
 - public/css/custom.css
 - public/js/jquery.js
 - public/js/jquery.enablePlaceholder.min.js
+- public/js/bootstrap.transition.js
+- public/js/jquery.ui.js
+- public/js/yaml.js
+- public/js/bootstrap.modal.js
+- public/js/bootstrap.dropdown.js
+- public/js/jquery.index.js
+- public/js/store.min.js
+- public/js/bootstrap-typeahead.js
 - public/js/sequenceserver.js
 - public/js/jquery.activity.js
 - public/js/sequenceserver.blast.js
+- public/js/jquery.scrollspy.js
 - tests/test_sequencehelpers.rb
+- tests/test_sequenceserver_blast.rb
 - tests/database/protein/Sinvicta2-2-3.prot.subset.fasta.pin
 - tests/database/protein/Sinvicta2-2-3.prot.subset.fasta
 - tests/database/protein/Sinvicta2-2-3.prot.subset.fasta.psq
@@ -84,6 +148,7 @@ files:
 - tests/database/nucleotide/Sinvicta2-2-3.cdna.subset.fasta.nin
 - tests/database/nucleotide/Sinvicta2-2-3.cdna.subset.fasta.nhr
 - tests/ui.specs.todo
+- tests/run
 - config.ru
 - example.config.yml
 - LICENSE.txt
@@ -92,33 +157,51 @@ files:
 - Gemfile
 - sequenceserver.gemspec
 - bin/sequenceserver
+has_rdoc: true
 homepage: http://sequenceserver.com
-licenses:
+licenses: 
 - SequenceServer (custom)
-post_install_message: ! "\n------------------------------------------------------------------------\n
-  \ Thank you for installing SequenceServer :)!\n\n  To launch SequenceServer execute
-  'sequenceserver' from command line.\n\n    $ sequenceserver\n\n\n  Visit http://sequenceserver.com
-  for more.\n------------------------------------------------------------------------\n\n"
+post_install_message: |+
+  
+  ------------------------------------------------------------------------
+    Thank you for installing SequenceServer :)!
+  
+    To launch SequenceServer execute 'sequenceserver' from command line.
+  
+      $ sequenceserver
+  
+  
+    Visit http://sequenceserver.com for more.
+  ------------------------------------------------------------------------
+  
 rdoc_options: []
-require_paths:
+
+require_paths: 
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement
+required_ruby_version: !ruby/object:Gem::Requirement 
   none: false
-  requirements:
-  - - ! '>='
-    - !ruby/object:Gem::Version
-      version: '0'
-required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
   none: false
-  requirements:
-  - - ! '>='
-    - !ruby/object:Gem::Version
-      version: '0'
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
 requirements: []
+
 rubyforge_project: 
-rubygems_version: 1.8.10
+rubygems_version: 1.6.2
 signing_key: 
 specification_version: 3
-summary: iPod of BLAST searching
+summary: BLAST search made easy!
 test_files: []
-has_rdoc: 
+