sequenceserver 0.6.7
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- data/Gemfile +4 -0
- data/LICENSE.txt +64 -0
- data/README.txt +5 -0
- data/bin/database_formatter +195 -0
- data/bin/sequenceserver +12 -0
- data/config.ru +5 -0
- data/example.config.yml +39 -0
- data/lib/sequenceserver/blast.rb +211 -0
- data/lib/sequenceserver/customisation.rb +60 -0
- data/lib/sequenceserver/database.rb +23 -0
- data/lib/sequenceserver/helpers.rb +127 -0
- data/lib/sequenceserver/sequencehelpers.rb +119 -0
- data/lib/sequenceserver/sinatralikeloggerformatter.rb +12 -0
- data/lib/sequenceserver.rb +525 -0
- data/public/blastResult.js +99 -0
- data/public/css/bootstrap.min.css +330 -0
- data/public/css/custom.css +92 -0
- data/public/js/jquery.enablePlaceholder.min.js +11 -0
- data/public/js/jquery.js +18 -0
- data/public/js/search.js +148 -0
- data/sequenceserver.gemspec +42 -0
- data/tests/database/nucleotide/Sinvicta2-2-3.cdna.subset.fasta +5486 -0
- data/tests/database/nucleotide/Sinvicta2-2-3.cdna.subset.fasta.nhr +0 -0
- data/tests/database/nucleotide/Sinvicta2-2-3.cdna.subset.fasta.nin +0 -0
- data/tests/database/nucleotide/Sinvicta2-2-3.cdna.subset.fasta.nsq +0 -0
- data/tests/database/protein/Sinvicta2-2-3.prot.subset.fasta +6449 -0
- data/tests/database/protein/Sinvicta2-2-3.prot.subset.fasta.phr +0 -0
- data/tests/database/protein/Sinvicta2-2-3.prot.subset.fasta.pin +0 -0
- data/tests/database/protein/Sinvicta2-2-3.prot.subset.fasta.psq +0 -0
- data/tests/test_sequencehelpers.rb +85 -0
- data/views/500.erb +22 -0
- data/views/search.erb +221 -0
- metadata +141 -0
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