sequenceserver 0.6.7 → 0.6.8

data/Gemfile

@@ -1,4 +1,3 @@
 source "http://rubygems.org"
 
-gem 'ptools'
-gem 'sinatra', '>=1.0'
+gemspec

data/lib/sequenceserver.rb

@@ -51,7 +51,7 @@ module SequenceServer
       # path to SequenceServer's configuration file
       #
       # The configuration file is a simple, YAML data store.
-      set :config_file, Proc.new{ File.expand_path('~/.sequenceserver.yml') }
+      set :config_file, Proc.new{ File.expand_path('~/.sequenceserver.conf') }
 
       set :log,        Proc.new { Logger.new(STDERR) }
       log.formatter = SinatraLikeLogFormatter.new()
@@ -205,7 +205,7 @@ module SequenceServer
       rescue Errno::ENOENT # config file not found
         log.info('Configuration file not found')
         FileUtils.cp(example_config_file, config_file)
-        log.info('Generated a dummy configuragion file')
+        log.info("Generated a dummy configuration file: #{config_file}")
         puts "\nPlease edit #{config_file} to indicate the location of your BLAST databases and run SequenceServer again."
         exit
       end

data/lib/sequenceserver/helpers.rb

@@ -32,9 +32,9 @@ module SequenceServer
             binaries[method] = path
           else
             blasturl = 'http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download'
-            raise IOError, "Could not find blast binaries. You may need to
-            install BLAST+ from #{blasturl}. And/or point config.yml to blast's
-            bin directory."
+            raise IOError, "Could not find blast binaries." +
+            "\n\nYou may need to download BLAST+ from #{blasturl}." +
+            " And/or edit #{settings.config_file} to indicate the location of BLAST+ binaries."
           end
         end
 

data/sequenceserver.gemspec

@@ -1,7 +1,7 @@
 Gem::Specification.new do |s|
   # meta
   s.name        = 'sequenceserver'
-  s.version     = '0.6.7'
+  s.version     = '0.6.8'
   s.authors     = ['Anurag Priyam', 'Ben J Woodcroft', 'Yannick Wurm']
   s.email       = 'anurag08priyam@gmail.com'
   s.homepage    = 'http://sequenceserver.com'
@@ -13,7 +13,7 @@ SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user in
 DESC
 
   # dependencies
-  s.add_dependency('sinatra', '>= 1.0')
+  s.add_dependency('sinatra', '>= 1.2.0')
   s.add_dependency('ptools')
 
   # gem

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: sequenceserver
 version: !ruby/object:Gem::Version 
-  hash: 9
+  hash: 23
   prerelease: 
   segments: 
   - 0
   - 6
-  - 7
-  version: 0.6.7
+  - 8
+  version: 0.6.8
 platform: ruby
 authors: 
 - Anurag Priyam
@@ -17,7 +17,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-12-13 00:00:00 Z
+date: 2011-12-15 00:00:00 Z
 dependencies: 
 - !ruby/object:Gem::Dependency 
   name: sinatra
@@ -27,11 +27,12 @@ dependencies:
     requirements: 
     - - ">="
       - !ruby/object:Gem::Version 
-        hash: 15
+        hash: 31
         segments: 
         - 1
+        - 2
         - 0
-        version: "1.0"
+        version: 1.2.0
   type: :runtime
   version_requirements: *id001
 - !ruby/object:Gem::Dependency