sequence_logo 1.1.0 → 1.1.1
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- checksums.yaml +4 -4
- data/TODO.txt +1 -3
- data/lib/sequence_logo/assets/nucl_weblogo/a.png +0 -0
- data/lib/sequence_logo/assets/nucl_weblogo/c.png +0 -0
- data/lib/sequence_logo/assets/nucl_weblogo/g.png +0 -0
- data/lib/sequence_logo/assets/nucl_weblogo/t.png +0 -0
- data/lib/sequence_logo/canvas_factory.rb +1 -1
- data/lib/sequence_logo/exec/sequence_logo.rb +7 -6
- data/lib/sequence_logo/version.rb +1 -1
- metadata +6 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
|
3
|
-
metadata.gz:
|
4
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-
data.tar.gz:
|
3
|
+
metadata.gz: 2411aa5c78c5efae4860eafaa8743acbbc526f04
|
4
|
+
data.tar.gz: b4451fceda9c126ed40a8db058b649f626a0ba7a
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 32b810e2ed04ede3d15face6e91cf9fe677a30217f24c9f535fdd97f681028fd706d8c0f488d3198d984ab455bce982de0717367c6fc315462e8ff7f2419bb1c
|
7
|
+
data.tar.gz: fcf545d611c2ce7fd9b449273e25fac6fe094b158b9c676b39b934f8e84f480f4a4697e54779263832594e1b26f59b87f0585133cf89226309631c62ebf18f44
|
data/TODO.txt
CHANGED
@@ -1,8 +1,6 @@
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|
1
1
|
AssetsPath shouldn't be used at draw_logo level because it makes it impossible to change scheme on one folder that is outside the gem
|
2
2
|
And how to make possible use schemes inside the assets path
|
3
3
|
|
4
|
-
Make use of Tempfile in glue_logos.
|
5
|
-
|
6
4
|
Make tests
|
7
5
|
|
8
|
-
Wrap execs into methods
|
6
|
+
Wrap execs into methods
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
@@ -62,7 +62,7 @@ module SequenceLogo
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|
62
62
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def rescale_letters(letters_with_heights)
|
63
63
|
letters_with_heights
|
64
64
|
.reject{|part_of_height, letter| y_unit * part_of_height <= 1 }
|
65
|
-
.map{|part_of_height, letter| [(y_unit * part_of_height), letter] }
|
65
|
+
.map{|part_of_height, letter| [(y_unit * part_of_height).round, letter] }
|
66
66
|
end
|
67
67
|
private :logo_for_ordered_letters_nonscaling, :rescale_letters
|
68
68
|
|
@@ -6,12 +6,12 @@ def in_necessary_orientations(objects_to_render, orientation, logo_folder)
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|
6
6
|
objects_to_render.map do |infos|
|
7
7
|
case orientation
|
8
8
|
when :direct
|
9
|
-
{renderable: infos[:renderable], filename:
|
9
|
+
{renderable: infos[:renderable], filename: "#{infos[:name]}.png" }
|
10
10
|
when :revcomp
|
11
|
-
{renderable: infos[:renderable].revcomp, filename:
|
11
|
+
{renderable: infos[:renderable].revcomp, filename: "#{infos[:name]}.png" }
|
12
12
|
when :both
|
13
|
-
[ {renderable: infos[:renderable], filename:
|
14
|
-
{renderable: infos[:renderable].revcomp, filename:
|
13
|
+
[ {renderable: infos[:renderable], filename: "#{infos[:name]}_direct.png" },
|
14
|
+
{renderable: infos[:renderable].revcomp, filename: "#{infos[:name]}_revcomp.png" } ]
|
15
15
|
end
|
16
16
|
end.flatten
|
17
17
|
end
|
@@ -104,12 +104,13 @@ begin
|
|
104
104
|
icd_mode: options[:icd_mode],
|
105
105
|
words_count: options[:words_count],
|
106
106
|
enable_threshold_lines: options[:threshold_lines])
|
107
|
-
objects_to_render << {renderable: logo, name: File.
|
107
|
+
objects_to_render << {renderable: logo, name: File.basename_wo_extname(filename)}
|
108
108
|
end
|
109
109
|
end
|
110
110
|
|
111
111
|
in_necessary_orientations(objects_to_render, options[:orientation], logo_folder).each do |infos|
|
112
|
-
|
112
|
+
filename = File.join(logo_folder, infos[:filename])
|
113
|
+
infos[:renderable].render(canvas_factory).write("PNG:#{filename}")
|
113
114
|
end
|
114
115
|
rescue => err
|
115
116
|
$stderr.puts "\n#{err}\n#{err.backtrace.first(5).join("\n")}\n\nUse --help option for help\n\n#{doc}"
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: sequence_logo
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.1.
|
4
|
+
version: 1.1.1
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Ilya Vorontsov
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2014-
|
11
|
+
date: 2014-05-26 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rmagick
|
@@ -53,6 +53,10 @@ files:
|
|
53
53
|
- lib/sequence_logo/assets/nucl_simpa_bw/c.png
|
54
54
|
- lib/sequence_logo/assets/nucl_simpa_bw/g.png
|
55
55
|
- lib/sequence_logo/assets/nucl_simpa_bw/t.png
|
56
|
+
- lib/sequence_logo/assets/nucl_weblogo/a.png
|
57
|
+
- lib/sequence_logo/assets/nucl_weblogo/c.png
|
58
|
+
- lib/sequence_logo/assets/nucl_weblogo/g.png
|
59
|
+
- lib/sequence_logo/assets/nucl_weblogo/t.png
|
56
60
|
- lib/sequence_logo/canvas_factory.rb
|
57
61
|
- lib/sequence_logo/canvases.rb
|
58
62
|
- lib/sequence_logo/canvases/gluing_canvas.rb
|