sequence_logo 1.0.5 → 1.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/sequence_logo/exec/glue_logos.rb +8 -7
- data/lib/sequence_logo/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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3
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metadata.gz: 885b0f25932abe6a453fcbfb48eaae9e5227383a
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4
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data.tar.gz: fc7ca0ff71c311e8d7301d086ed3b4d153f0493f
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: c47be1cb8060cd2ed305d4d21862b86db24d6b24b7b5989fbe86a4fb245c2b8db6a07595a2719c922d0a32bdd10d59f8e916c87c23610911c1a18ca547148ce8
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7
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data.tar.gz: cfc2df9b0029a19f17070a9937e6a5c61ccebee6ff0c1e65dac5da573c8e5e23de23b23ae240f00dcfc06b525f8e748c35ebfdd006765e2cd608e820450dc72f
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@@ -1,10 +1,11 @@
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require_relative '../../sequence_logo'
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require 'fileutils'
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require 'cgi'
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require 'tempfile'
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def generate_glued_logo(alignment_infos, options, total_orientation, output_file)
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logos = {}
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-
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logo_files = []
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rightmost_side = alignment_infos.map do |line|
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filename, shift, orientation, motif_name = line.strip.split("\t")
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shift = shift.to_i
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@@ -22,21 +23,21 @@ def generate_glued_logo(alignment_infos, options, total_orientation, output_file
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shift = rightmost_side - shift - ppm.length
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end
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checkerr("bad input file: #{filename}") { ppm == nil }
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-
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-
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logo_file = Tempfile.new(filename)
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logo_files << logo_file
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case orientation
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when 'direct'
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-
SequenceLogo.draw_logo(ppm, options).write(
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SequenceLogo.draw_logo(ppm, options).write("PNG:#{logo_file.path}")
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when 'revcomp'
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SequenceLogo.draw_logo(ppm.revcomp, options).write(
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SequenceLogo.draw_logo(ppm.revcomp, options).write("PNG:#{logo_file.path}")
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else
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raise "Unknown orientation #{orientation} for #{motif_name}"
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end
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logos[
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logos[logo_file.path] = {shift: shift, length: ppm.length, name: motif_name}
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end
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SequenceLogo.glue_files(logos, output_file, options)
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-
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logo_files.each(&:close)
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end
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begin
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: sequence_logo
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version: !ruby/object:Gem::Version
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version: 1.0.
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version: 1.0.6
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platform: ruby
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authors:
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- Ilya Vorontsov
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-02-
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date: 2014-02-21 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rmagick
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