sequence_logo 1.0.5 → 1.0.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 9ea7a0c46fdbeeb7d5a21ecd29b6959079ad19b5
+  metadata.gz: 885b0f25932abe6a453fcbfb48eaae9e5227383a
+  data.tar.gz: fc7ca0ff71c311e8d7301d086ed3b4d153f0493f
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+  data.tar.gz: cfc2df9b0029a19f17070a9937e6a5c61ccebee6ff0c1e65dac5da573c8e5e23de23b23ae240f00dcfc06b525f8e748c35ebfdd006765e2cd608e820450dc72f

data/lib/sequence_logo/exec/glue_logos.rb

@@ -1,10 +1,11 @@
 require_relative '../../sequence_logo'
 require 'fileutils'
 require 'cgi'
+require 'tempfile'
 
 def generate_glued_logo(alignment_infos, options, total_orientation, output_file)
   logos = {}
-  logo_filenames = []
+  logo_files = []
   rightmost_side = alignment_infos.map do |line|
     filename, shift, orientation, motif_name = line.strip.split("\t")
     shift = shift.to_i
@@ -22,21 +23,21 @@ def generate_glued_logo(alignment_infos, options, total_orientation, output_file
       shift = rightmost_side - shift - ppm.length
     end
     checkerr("bad input file: #{filename}") { ppm == nil }
-    logo_filename = "#{filename}_temp.png"
-    logo_filenames << logo_filename
+    logo_file = Tempfile.new(filename)
+    logo_files << logo_file
     case orientation
     when 'direct'
-      SequenceLogo.draw_logo(ppm, options).write(logo_filename)
+      SequenceLogo.draw_logo(ppm, options).write("PNG:#{logo_file.path}")
     when 'revcomp'
-      SequenceLogo.draw_logo(ppm.revcomp, options).write(logo_filename)
+      SequenceLogo.draw_logo(ppm.revcomp, options).write("PNG:#{logo_file.path}")
     else
       raise "Unknown orientation #{orientation} for #{motif_name}"
     end
-    logos[logo_filename] = {shift: shift, length: ppm.length, name: motif_name}
+    logos[logo_file.path] = {shift: shift, length: ppm.length, name: motif_name}
   end
 
   SequenceLogo.glue_files(logos, output_file, options)
-  logo_filenames.each{|filename| File.delete(filename) }
+  logo_files.each(&:close)
 end
 
 begin

data/lib/sequence_logo/version.rb

@@ -1,3 +1,3 @@
 module SequenceLogo
-  VERSION = "1.0.5"
+  VERSION = "1.0.6"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sequence_logo
 version: !ruby/object:Gem::Version
-  version: 1.0.5
+  version: 1.0.6
 platform: ruby
 authors:
 - Ilya Vorontsov
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-02-20 00:00:00.000000000 Z
+date: 2014-02-21 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rmagick