semtools 0.1.2 → 0.1.8
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- checksums.yaml +4 -4
- data/Gemfile +4 -1
- data/bin/onto2json.rb +9 -3
- data/bin/semtools.rb +446 -0
- data/bin/strsimnet.rb +1 -2
- data/external_data/ontologies.txt +4 -0
- data/lib/semtools/math_methods.rb +137 -129
- data/lib/semtools/ontology.rb +2550 -2032
- data/lib/semtools/sim_handler.rb +1 -1
- data/lib/semtools/version.rb +1 -1
- data/lib/semtools.rb +0 -1
- data/semtools.gemspec +3 -0
- metadata +48 -3
data/lib/semtools/sim_handler.rb
CHANGED
@@ -92,7 +92,7 @@ end
|
|
92
92
|
# +charsToRemove+:: char (or chars set) to be removed from texts to be compared
|
93
93
|
# +unique+:: boolean flag which indicates if repeated elements must be removed
|
94
94
|
# Returns the similarity percentage for all elements into array
|
95
|
-
def similitude_network(items_array, splitChar
|
95
|
+
def similitude_network(items_array, splitChar: ";", charsToRemove: "", unique: false)
|
96
96
|
# Special cases
|
97
97
|
return nil if items_array.nil?
|
98
98
|
return nil if !items_array.is_a? Array
|
data/lib/semtools/version.rb
CHANGED
data/lib/semtools.rb
CHANGED
data/semtools.gemspec
CHANGED
@@ -31,7 +31,10 @@ Gem::Specification.new do |spec|
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|
31
31
|
spec.require_paths = ["lib"]
|
32
32
|
|
33
33
|
spec.add_dependency "text"
|
34
|
+
spec.add_dependency "down"
|
35
|
+
spec.add_dependency "expcalc"
|
34
36
|
|
35
37
|
spec.add_development_dependency "rake"
|
36
38
|
spec.add_development_dependency "rspec"
|
39
|
+
spec.add_runtime_dependency 'colorize', '>= 0.7.3'
|
37
40
|
end
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: semtools
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.8
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- seoanezonjic
|
@@ -9,7 +9,7 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
|
-
date:
|
12
|
+
date: 2022-03-10 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: text
|
@@ -25,6 +25,34 @@ dependencies:
|
|
25
25
|
- - ">="
|
26
26
|
- !ruby/object:Gem::Version
|
27
27
|
version: '0'
|
28
|
+
- !ruby/object:Gem::Dependency
|
29
|
+
name: down
|
30
|
+
requirement: !ruby/object:Gem::Requirement
|
31
|
+
requirements:
|
32
|
+
- - ">="
|
33
|
+
- !ruby/object:Gem::Version
|
34
|
+
version: '0'
|
35
|
+
type: :runtime
|
36
|
+
prerelease: false
|
37
|
+
version_requirements: !ruby/object:Gem::Requirement
|
38
|
+
requirements:
|
39
|
+
- - ">="
|
40
|
+
- !ruby/object:Gem::Version
|
41
|
+
version: '0'
|
42
|
+
- !ruby/object:Gem::Dependency
|
43
|
+
name: expcalc
|
44
|
+
requirement: !ruby/object:Gem::Requirement
|
45
|
+
requirements:
|
46
|
+
- - ">="
|
47
|
+
- !ruby/object:Gem::Version
|
48
|
+
version: '0'
|
49
|
+
type: :runtime
|
50
|
+
prerelease: false
|
51
|
+
version_requirements: !ruby/object:Gem::Requirement
|
52
|
+
requirements:
|
53
|
+
- - ">="
|
54
|
+
- !ruby/object:Gem::Version
|
55
|
+
version: '0'
|
28
56
|
- !ruby/object:Gem::Dependency
|
29
57
|
name: rake
|
30
58
|
requirement: !ruby/object:Gem::Requirement
|
@@ -53,6 +81,20 @@ dependencies:
|
|
53
81
|
- - ">="
|
54
82
|
- !ruby/object:Gem::Version
|
55
83
|
version: '0'
|
84
|
+
- !ruby/object:Gem::Dependency
|
85
|
+
name: colorize
|
86
|
+
requirement: !ruby/object:Gem::Requirement
|
87
|
+
requirements:
|
88
|
+
- - ">="
|
89
|
+
- !ruby/object:Gem::Version
|
90
|
+
version: 0.7.3
|
91
|
+
type: :runtime
|
92
|
+
prerelease: false
|
93
|
+
version_requirements: !ruby/object:Gem::Requirement
|
94
|
+
requirements:
|
95
|
+
- - ">="
|
96
|
+
- !ruby/object:Gem::Version
|
97
|
+
version: 0.7.3
|
56
98
|
description: This gem allows to perform ontology based operations and calculation
|
57
99
|
of Semantic similarity and information coefficient using different implementations.
|
58
100
|
email:
|
@@ -61,6 +103,7 @@ email:
|
|
61
103
|
executables:
|
62
104
|
- console
|
63
105
|
- onto2json.rb
|
106
|
+
- semtools.rb
|
64
107
|
- setup
|
65
108
|
- strsimnet.rb
|
66
109
|
extensions: []
|
@@ -76,8 +119,10 @@ files:
|
|
76
119
|
- Rakefile
|
77
120
|
- bin/console
|
78
121
|
- bin/onto2json.rb
|
122
|
+
- bin/semtools.rb
|
79
123
|
- bin/setup
|
80
124
|
- bin/strsimnet.rb
|
125
|
+
- external_data/ontologies.txt
|
81
126
|
- lib/data/hp.obo
|
82
127
|
- lib/data/phenotype_annotation.tab
|
83
128
|
- lib/semtools.rb
|
@@ -105,7 +150,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
105
150
|
- !ruby/object:Gem::Version
|
106
151
|
version: '0'
|
107
152
|
requirements: []
|
108
|
-
rubygems_version: 3.2.
|
153
|
+
rubygems_version: 3.2.15
|
109
154
|
signing_key:
|
110
155
|
specification_version: 4
|
111
156
|
summary: Gem to handle semantic based calculations in text and defined ontologies
|