semtools 0.1.2 → 0.1.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile +4 -1
- data/bin/onto2json.rb +9 -3
- data/bin/semtools.rb +446 -0
- data/bin/strsimnet.rb +1 -2
- data/external_data/ontologies.txt +4 -0
- data/lib/semtools/math_methods.rb +137 -129
- data/lib/semtools/ontology.rb +2550 -2032
- data/lib/semtools/sim_handler.rb +1 -1
- data/lib/semtools/version.rb +1 -1
- data/lib/semtools.rb +0 -1
- data/semtools.gemspec +3 -0
- metadata +48 -3
data/lib/semtools/sim_handler.rb
CHANGED
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@@ -92,7 +92,7 @@ end
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# +charsToRemove+:: char (or chars set) to be removed from texts to be compared
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# +unique+:: boolean flag which indicates if repeated elements must be removed
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# Returns the similarity percentage for all elements into array
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-
def similitude_network(items_array, splitChar
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+
def similitude_network(items_array, splitChar: ";", charsToRemove: "", unique: false)
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# Special cases
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return nil if items_array.nil?
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return nil if !items_array.is_a? Array
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data/lib/semtools/version.rb
CHANGED
data/lib/semtools.rb
CHANGED
data/semtools.gemspec
CHANGED
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@@ -31,7 +31,10 @@ Gem::Specification.new do |spec|
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spec.require_paths = ["lib"]
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spec.add_dependency "text"
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34
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+
spec.add_dependency "down"
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+
spec.add_dependency "expcalc"
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spec.add_development_dependency "rake"
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spec.add_development_dependency "rspec"
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+
spec.add_runtime_dependency 'colorize', '>= 0.7.3'
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end
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
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--- !ruby/object:Gem::Specification
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name: semtools
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version: !ruby/object:Gem::Version
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-
version: 0.1.
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4
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version: 0.1.8
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platform: ruby
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authors:
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- seoanezonjic
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date:
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+
date: 2022-03-10 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: text
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@@ -25,6 +25,34 @@ dependencies:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: down
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: expcalc
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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@@ -53,6 +81,20 @@ dependencies:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: colorize
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.7.3
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.7.3
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description: This gem allows to perform ontology based operations and calculation
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of Semantic similarity and information coefficient using different implementations.
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email:
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@@ -61,6 +103,7 @@ email:
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executables:
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- console
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- onto2json.rb
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+
- semtools.rb
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- setup
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- strsimnet.rb
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extensions: []
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@@ -76,8 +119,10 @@ files:
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- Rakefile
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- bin/console
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- bin/onto2json.rb
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+
- bin/semtools.rb
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- bin/setup
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- bin/strsimnet.rb
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+
- external_data/ontologies.txt
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- lib/data/hp.obo
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- lib/data/phenotype_annotation.tab
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- lib/semtools.rb
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@@ -105,7 +150,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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-
rubygems_version: 3.2.
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+
rubygems_version: 3.2.15
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signing_key:
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specification_version: 4
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summary: Gem to handle semantic based calculations in text and defined ontologies
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