search_biomodel 2.0.2 → 2.1.0
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- data/.idea/search_biomodel.iml +4 -0
- data/.idea/workspace.xml +79 -24
- data/VERSION +1 -1
- data/lib/search_biomodel.rb +1 -5
- data/search_biomodel.gemspec +2 -2
- metadata +3 -3
data/.idea/search_biomodel.iml
CHANGED
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@@ -39,6 +39,10 @@
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39
39
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<orderEntry type="library" scope="PROVIDED" name="[gem] nokogiri (v1.4.6, /usr/lib/ruby/gems/1.8/gems/nokogiri-1.4.6)" level="application" />
|
|
40
40
|
<orderEntry type="library" scope="PROVIDED" name="[gem] httpi (v0.9.4, /usr/lib/ruby/gems/1.8/gems/httpi-0.9.4)" level="application" />
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|
41
41
|
<orderEntry type="library" scope="PROVIDED" name="[gem] nori (v1.0.1, /usr/lib/ruby/gems/1.8/gems/nori-1.0.1)" level="application" />
|
|
42
|
+
<orderEntry type="library" scope="PROVIDED" name="[gem] rcov (v1.0.0, /usr/lib/ruby/gems/1.8/gems/rcov-1.0.0)" level="application" />
|
|
43
|
+
<orderEntry type="library" scope="PROVIDED" name="[gem] savon (v0.9.7, /usr/lib/ruby/gems/1.8/gems/savon-0.9.7)" level="application" />
|
|
44
|
+
<orderEntry type="library" scope="PROVIDED" name="[gem] akami (v1.0.0, /usr/lib/ruby/gems/1.8/gems/akami-1.0.0)" level="application" />
|
|
45
|
+
<orderEntry type="library" scope="PROVIDED" name="[gem] wasabi (v2.0.0, /usr/lib/ruby/gems/1.8/gems/wasabi-2.0.0)" level="application" />
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|
42
46
|
</component>
|
|
43
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|
</module>
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|
44
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|
data/.idea/workspace.xml
CHANGED
|
@@ -2,9 +2,7 @@
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|
|
2
2
|
<project version="4">
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|
3
3
|
<component name="ChangeListManager">
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|
4
4
|
<list default="true" id="c5060248-6b34-4e75-b0c1-8bf3e1f0b7e1" name="Default" comment="">
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|
5
|
-
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/
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|
6
|
-
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/lib/search_biomodel.rb" afterPath="$PROJECT_DIR$/lib/search_biomodel.rb" />
|
|
7
|
-
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/test/test_search_biomodel.rb" afterPath="$PROJECT_DIR$/test/test_search_biomodel.rb" />
|
|
5
|
+
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/search_biomodel.iml" afterPath="$PROJECT_DIR$/.idea/search_biomodel.iml" />
|
|
8
6
|
</list>
|
|
9
7
|
<ignored path="search_biomodel.iws" />
|
|
10
8
|
<ignored path=".idea/workspace.xml" />
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|
@@ -37,10 +35,19 @@
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</provider>
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|
38
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|
</entry>
|
|
39
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|
</file>
|
|
40
|
-
<file leaf-file-name="search_biomodel.rb" pinned="false" current="
|
|
38
|
+
<file leaf-file-name="search_biomodel.rb" pinned="false" current="false" current-in-tab="false">
|
|
41
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|
<entry file="file://$PROJECT_DIR$/lib/search_biomodel.rb">
|
|
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|
<provider selected="true" editor-type-id="text-editor">
|
|
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|
-
<state line="
|
|
41
|
+
<state line="7" column="26" selection-start="103" selection-end="103" vertical-scroll-proportion="0.0">
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|
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+
<folding />
|
|
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|
+
</state>
|
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+
</provider>
|
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+
</entry>
|
|
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+
</file>
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|
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+
<file leaf-file-name="Rakefile" pinned="false" current="true" current-in-tab="true">
|
|
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+
<entry file="file://$PROJECT_DIR$/Rakefile">
|
|
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|
+
<provider selected="true" editor-type-id="text-editor">
|
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+
<state line="0" column="0" selection-start="0" selection-end="0" vertical-scroll-proportion="0.0">
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|
<folding />
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|
</state>
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|
</provider>
|
|
@@ -49,7 +56,16 @@
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|
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|
<file leaf-file-name="search_biomodel.gemspec" pinned="false" current="false" current-in-tab="false">
|
|
50
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|
<entry file="file://$PROJECT_DIR$/search_biomodel.gemspec">
|
|
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|
<provider selected="true" editor-type-id="text-editor">
|
|
52
|
-
<state line="59" column="99" selection-start="
|
|
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+
<state line="59" column="99" selection-start="1934" selection-end="1934" vertical-scroll-proportion="0.0">
|
|
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+
<folding />
|
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+
</state>
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+
</provider>
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+
</entry>
|
|
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+
</file>
|
|
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+
<file leaf-file-name="Gemfile" pinned="false" current="false" current-in-tab="false">
|
|
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+
<entry file="file://$PROJECT_DIR$/Gemfile">
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+
<provider selected="true" editor-type-id="text-editor">
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+
<state line="10" column="36" selection-start="331" selection-end="331" vertical-scroll-proportion="0.0">
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|
<folding />
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|
</state>
|
|
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|
</provider>
|
|
@@ -120,6 +136,24 @@
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|
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|
<option name="myItemId" value="search_biomodel" />
|
|
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|
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
|
|
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|
</PATH_ELEMENT>
|
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+
<PATH_ELEMENT>
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|
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+
<option name="myItemId" value="External Libraries" />
|
|
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+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ExternalLibrariesNode" />
|
|
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+
</PATH_ELEMENT>
|
|
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+
</PATH>
|
|
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|
+
<PATH>
|
|
145
|
+
<PATH_ELEMENT>
|
|
146
|
+
<option name="myItemId" value="search_biomodel" />
|
|
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+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
|
|
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+
</PATH_ELEMENT>
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|
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+
<PATH_ELEMENT>
|
|
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|
+
<option name="myItemId" value="External Libraries" />
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|
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+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ExternalLibrariesNode" />
|
|
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|
+
</PATH_ELEMENT>
|
|
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|
+
<PATH_ELEMENT>
|
|
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|
+
<option name="myItemId" value="< ruby-1.8.7-p249 >" />
|
|
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|
+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.NamedLibraryElementNode" />
|
|
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|
+
</PATH_ELEMENT>
|
|
123
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|
</PATH>
|
|
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|
<PATH>
|
|
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|
<PATH_ELEMENT>
|
|
@@ -159,6 +193,20 @@
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|
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|
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
|
|
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|
</PATH_ELEMENT>
|
|
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|
</PATH>
|
|
196
|
+
<PATH>
|
|
197
|
+
<PATH_ELEMENT>
|
|
198
|
+
<option name="myItemId" value="search_biomodel" />
|
|
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|
+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
|
|
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|
+
</PATH_ELEMENT>
|
|
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|
+
<PATH_ELEMENT>
|
|
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|
+
<option name="myItemId" value="search_biomodel" />
|
|
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|
+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
|
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+
</PATH_ELEMENT>
|
|
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+
<PATH_ELEMENT>
|
|
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|
+
<option name="myItemId" value="coverage" />
|
|
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|
+
<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
|
|
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|
+
</PATH_ELEMENT>
|
|
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|
+
</PATH>
|
|
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|
</subPane>
|
|
163
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|
</pane>
|
|
164
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|
<pane id="Favorites" />
|
|
@@ -317,6 +365,7 @@
|
|
|
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|
</component>
|
|
318
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|
<component name="TaskManager">
|
|
319
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|
<task active="true" id="Default" summary="Default task">
|
|
368
|
+
<changelist id="c5060248-6b34-4e75-b0c1-8bf3e1f0b7e1" name="Default" comment="" />
|
|
320
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|
<created>1309955102836</created>
|
|
321
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|
<updated>1309955102836</updated>
|
|
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|
</task>
|
|
@@ -346,21 +395,21 @@
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|
|
346
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|
<frame x="0" y="0" width="1680" height="1050" extended-state="0" />
|
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|
<editor active="true" />
|
|
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|
<layout>
|
|
349
|
-
<window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="
|
|
398
|
+
<window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
|
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<window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
|
|
351
|
-
<window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
|
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|
<window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="true" content_ui="tabs" />
|
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353
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-
<window_info id="Dependency Viewer" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="
|
|
401
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+
<window_info id="Dependency Viewer" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.2496977" sideWeight="0.67027026" order="0" side_tool="false" content_ui="tabs" />
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<window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
|
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-
<window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="
|
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<window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="
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+
<window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32876712" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
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+
<window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
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<window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
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<window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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409
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+
<window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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<window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
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-
<window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
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<window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
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+
<window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
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</layout>
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</component>
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<component name="VcsManagerConfiguration">
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@@ -398,42 +447,48 @@
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<component name="editorHistoryManager">
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<entry file="file://$PROJECT_DIR$/LICENSE.txt">
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<provider selected="true" editor-type-id="text-editor">
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-
<state line="11" column="32" selection-start="462" selection-end="462" vertical-scroll-proportion="0.2787162"
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<folding />
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-
</state>
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+
<state line="11" column="32" selection-start="462" selection-end="462" vertical-scroll-proportion="0.2787162" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/README.rdoc">
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<provider selected="true" editor-type-id="text-editor">
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<state line="16" column="0" selection-start="710" selection-end="710" vertical-scroll-proportion="-0.4189189"
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<folding />
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-
</state>
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<state line="16" column="0" selection-start="710" selection-end="710" vertical-scroll-proportion="-0.4189189" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/test/helper.rb">
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<provider selected="true" editor-type-id="text-editor">
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<state line="7" column="25" selection-start="224" selection-end="224" vertical-scroll-proportion="0.0"
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<state line="7" column="25" selection-start="224" selection-end="224" vertical-scroll-proportion="0.0" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/search_biomodel.gemspec">
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<provider selected="true" editor-type-id="text-editor">
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<state line="59" column="99" selection-start="1934" selection-end="1934" vertical-scroll-proportion="0.0">
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</state>
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</provider>
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</entry>
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-
<entry file="file://$PROJECT_DIR$/
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<entry file="file://$PROJECT_DIR$/Gemfile">
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<provider selected="true" editor-type-id="text-editor">
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<state line="
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<state line="10" column="36" selection-start="331" selection-end="331" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/test/test_search_biomodel.rb">
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<provider selected="true" editor-type-id="text-editor">
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-
<state line="28" column="77" selection-start="811" selection-end="811" vertical-scroll-proportion="0.0"
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<state line="28" column="77" selection-start="811" selection-end="811" vertical-scroll-proportion="0.0" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/lib/search_biomodel.rb">
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<provider selected="true" editor-type-id="text-editor">
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<state line="7" column="26" selection-start="103" selection-end="103" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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</entry>
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434
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-
<entry file="file://$PROJECT_DIR$/
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+
<entry file="file://$PROJECT_DIR$/Rakefile">
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<provider selected="true" editor-type-id="text-editor">
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<state line="
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+
<state line="0" column="0" selection-start="0" selection-end="0" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
2.0
|
|
1
|
+
2.1.0
|
data/lib/search_biomodel.rb
CHANGED
|
@@ -33,7 +33,7 @@ module SysMODB
|
|
|
33
33
|
#turn into one big array, remove duplicates and select first X
|
|
34
34
|
results = results.flatten
|
|
35
35
|
results = results.uniq
|
|
36
|
-
results = results.first(
|
|
36
|
+
results = results.first(10)
|
|
37
37
|
|
|
38
38
|
sbml_results = Array.new
|
|
39
39
|
|
|
@@ -77,10 +77,6 @@ module SysMODB
|
|
|
77
77
|
end
|
|
78
78
|
end
|
|
79
79
|
|
|
80
|
-
def test_stuffs()
|
|
81
|
-
puts "Hi"
|
|
82
|
-
end
|
|
83
|
-
|
|
84
80
|
#search_by_chebiid
|
|
85
81
|
#search_by_name
|
|
86
82
|
#search_by_person
|
data/search_biomodel.gemspec
CHANGED
|
@@ -5,11 +5,11 @@
|
|
|
5
5
|
|
|
6
6
|
Gem::Specification.new do |s|
|
|
7
7
|
s.name = %q{search_biomodel}
|
|
8
|
-
s.version = "2.0
|
|
8
|
+
s.version = "2.1.0"
|
|
9
9
|
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
11
11
|
s.authors = ["Niall Beard"]
|
|
12
|
-
s.date = %q{2012-
|
|
12
|
+
s.date = %q{2012-03-20}
|
|
13
13
|
s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
|
|
14
14
|
s.email = %q{beardn9@cs.man.ac.uk}
|
|
15
15
|
s.extra_rdoc_files = [
|
metadata
CHANGED
|
@@ -5,9 +5,9 @@ version: !ruby/object:Gem::Version
|
|
|
5
5
|
prerelease: false
|
|
6
6
|
segments:
|
|
7
7
|
- 2
|
|
8
|
+
- 1
|
|
8
9
|
- 0
|
|
9
|
-
|
|
10
|
-
version: 2.0.2
|
|
10
|
+
version: 2.1.0
|
|
11
11
|
platform: ruby
|
|
12
12
|
authors:
|
|
13
13
|
- Niall Beard
|
|
@@ -15,7 +15,7 @@ autorequire:
|
|
|
15
15
|
bindir: bin
|
|
16
16
|
cert_chain: []
|
|
17
17
|
|
|
18
|
-
date: 2012-
|
|
18
|
+
date: 2012-03-20 00:00:00 +00:00
|
|
19
19
|
default_executable:
|
|
20
20
|
dependencies:
|
|
21
21
|
- !ruby/object:Gem::Dependency
|