search_biomodel 2.0.2 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.idea/search_biomodel.iml +4 -0
- data/.idea/workspace.xml +79 -24
- data/VERSION +1 -1
- data/lib/search_biomodel.rb +1 -5
- data/search_biomodel.gemspec +2 -2
- metadata +3 -3
data/.idea/search_biomodel.iml
CHANGED
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@@ -39,6 +39,10 @@
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<orderEntry type="library" scope="PROVIDED" name="[gem] nokogiri (v1.4.6, /usr/lib/ruby/gems/1.8/gems/nokogiri-1.4.6)" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="[gem] httpi (v0.9.4, /usr/lib/ruby/gems/1.8/gems/httpi-0.9.4)" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="[gem] nori (v1.0.1, /usr/lib/ruby/gems/1.8/gems/nori-1.0.1)" level="application" />
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+
<orderEntry type="library" scope="PROVIDED" name="[gem] rcov (v1.0.0, /usr/lib/ruby/gems/1.8/gems/rcov-1.0.0)" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="[gem] savon (v0.9.7, /usr/lib/ruby/gems/1.8/gems/savon-0.9.7)" level="application" />
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<orderEntry type="library" scope="PROVIDED" name="[gem] akami (v1.0.0, /usr/lib/ruby/gems/1.8/gems/akami-1.0.0)" level="application" />
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+
<orderEntry type="library" scope="PROVIDED" name="[gem] wasabi (v2.0.0, /usr/lib/ruby/gems/1.8/gems/wasabi-2.0.0)" level="application" />
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</component>
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</module>
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data/.idea/workspace.xml
CHANGED
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@@ -2,9 +2,7 @@
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2
2
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<project version="4">
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3
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<component name="ChangeListManager">
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<list default="true" id="c5060248-6b34-4e75-b0c1-8bf3e1f0b7e1" name="Default" comment="">
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5
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-
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/
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6
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-
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/lib/search_biomodel.rb" afterPath="$PROJECT_DIR$/lib/search_biomodel.rb" />
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-
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/test/test_search_biomodel.rb" afterPath="$PROJECT_DIR$/test/test_search_biomodel.rb" />
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5
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+
<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/search_biomodel.iml" afterPath="$PROJECT_DIR$/.idea/search_biomodel.iml" />
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</list>
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<ignored path="search_biomodel.iws" />
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<ignored path=".idea/workspace.xml" />
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@@ -37,10 +35,19 @@
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</provider>
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</entry>
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</file>
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-
<file leaf-file-name="search_biomodel.rb" pinned="false" current="
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+
<file leaf-file-name="search_biomodel.rb" pinned="false" current="false" current-in-tab="false">
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<entry file="file://$PROJECT_DIR$/lib/search_biomodel.rb">
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<provider selected="true" editor-type-id="text-editor">
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-
<state line="
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+
<state line="7" column="26" selection-start="103" selection-end="103" vertical-scroll-proportion="0.0">
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<folding />
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+
</state>
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</provider>
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</entry>
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</file>
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+
<file leaf-file-name="Rakefile" pinned="false" current="true" current-in-tab="true">
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<entry file="file://$PROJECT_DIR$/Rakefile">
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+
<provider selected="true" editor-type-id="text-editor">
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<state line="0" column="0" selection-start="0" selection-end="0" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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@@ -49,7 +56,16 @@
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<file leaf-file-name="search_biomodel.gemspec" pinned="false" current="false" current-in-tab="false">
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<entry file="file://$PROJECT_DIR$/search_biomodel.gemspec">
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<provider selected="true" editor-type-id="text-editor">
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-
<state line="59" column="99" selection-start="
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+
<state line="59" column="99" selection-start="1934" selection-end="1934" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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</entry>
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</file>
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<file leaf-file-name="Gemfile" pinned="false" current="false" current-in-tab="false">
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<entry file="file://$PROJECT_DIR$/Gemfile">
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<provider selected="true" editor-type-id="text-editor">
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<state line="10" column="36" selection-start="331" selection-end="331" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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@@ -120,6 +136,24 @@
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<option name="myItemId" value="search_biomodel" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
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</PATH_ELEMENT>
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+
<PATH_ELEMENT>
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<option name="myItemId" value="External Libraries" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ExternalLibrariesNode" />
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</PATH_ELEMENT>
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</PATH>
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<PATH>
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<PATH_ELEMENT>
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+
<option name="myItemId" value="search_biomodel" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
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</PATH_ELEMENT>
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<PATH_ELEMENT>
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<option name="myItemId" value="External Libraries" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ExternalLibrariesNode" />
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</PATH_ELEMENT>
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<PATH_ELEMENT>
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<option name="myItemId" value="< ruby-1.8.7-p249 >" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.NamedLibraryElementNode" />
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</PATH_ELEMENT>
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</PATH>
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<PATH>
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<PATH_ELEMENT>
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@@ -159,6 +193,20 @@
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
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</PATH_ELEMENT>
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</PATH>
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<PATH>
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<PATH_ELEMENT>
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<option name="myItemId" value="search_biomodel" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
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</PATH_ELEMENT>
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<PATH_ELEMENT>
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<option name="myItemId" value="search_biomodel" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
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</PATH_ELEMENT>
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<PATH_ELEMENT>
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<option name="myItemId" value="coverage" />
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<option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
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</PATH_ELEMENT>
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</PATH>
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</subPane>
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</pane>
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<pane id="Favorites" />
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@@ -317,6 +365,7 @@
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</component>
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<component name="TaskManager">
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<task active="true" id="Default" summary="Default task">
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+
<changelist id="c5060248-6b34-4e75-b0c1-8bf3e1f0b7e1" name="Default" comment="" />
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<created>1309955102836</created>
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<updated>1309955102836</updated>
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</task>
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@@ -346,21 +395,21 @@
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<frame x="0" y="0" width="1680" height="1050" extended-state="0" />
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<editor active="true" />
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<layout>
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-
<window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="
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+
<window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
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-
<window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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<window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="true" content_ui="tabs" />
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-
<window_info id="Dependency Viewer" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="
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+
<window_info id="Dependency Viewer" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.2496977" sideWeight="0.67027026" order="0" side_tool="false" content_ui="tabs" />
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<window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
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<window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="
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<window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="
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<window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32876712" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
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<window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
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<window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
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<window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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+
<window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32972974" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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<window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
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-
<window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
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<window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
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<window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
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</layout>
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</component>
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<component name="VcsManagerConfiguration">
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<component name="editorHistoryManager">
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<entry file="file://$PROJECT_DIR$/LICENSE.txt">
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<provider selected="true" editor-type-id="text-editor">
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<state line="11" column="32" selection-start="462" selection-end="462" vertical-scroll-proportion="0.2787162"
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<folding />
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</state>
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<state line="11" column="32" selection-start="462" selection-end="462" vertical-scroll-proportion="0.2787162" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/README.rdoc">
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<provider selected="true" editor-type-id="text-editor">
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<state line="16" column="0" selection-start="710" selection-end="710" vertical-scroll-proportion="-0.4189189"
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<folding />
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</state>
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<state line="16" column="0" selection-start="710" selection-end="710" vertical-scroll-proportion="-0.4189189" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/test/helper.rb">
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<provider selected="true" editor-type-id="text-editor">
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<state line="7" column="25" selection-start="224" selection-end="224" vertical-scroll-proportion="0.0"
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<state line="7" column="25" selection-start="224" selection-end="224" vertical-scroll-proportion="0.0" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/search_biomodel.gemspec">
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<provider selected="true" editor-type-id="text-editor">
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<state line="59" column="99" selection-start="1934" selection-end="1934" vertical-scroll-proportion="0.0">
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</state>
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/
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<entry file="file://$PROJECT_DIR$/Gemfile">
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<provider selected="true" editor-type-id="text-editor">
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<state line="
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<state line="10" column="36" selection-start="331" selection-end="331" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/test/test_search_biomodel.rb">
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<provider selected="true" editor-type-id="text-editor">
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<state line="28" column="77" selection-start="811" selection-end="811" vertical-scroll-proportion="0.0"
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<state line="28" column="77" selection-start="811" selection-end="811" vertical-scroll-proportion="0.0" />
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/lib/search_biomodel.rb">
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<provider selected="true" editor-type-id="text-editor">
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<state line="7" column="26" selection-start="103" selection-end="103" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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</entry>
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<entry file="file://$PROJECT_DIR$/
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<entry file="file://$PROJECT_DIR$/Rakefile">
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<provider selected="true" editor-type-id="text-editor">
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<state line="
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<state line="0" column="0" selection-start="0" selection-end="0" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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data/VERSION
CHANGED
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data/lib/search_biomodel.rb
CHANGED
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#turn into one big array, remove duplicates and select first X
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results = results.flatten
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results = results.uniq
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results = results.first(
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results = results.first(10)
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sbml_results = Array.new
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end
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end
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def test_stuffs()
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puts "Hi"
|
|
82
|
-
end
|
|
83
|
-
|
|
84
80
|
#search_by_chebiid
|
|
85
81
|
#search_by_name
|
|
86
82
|
#search_by_person
|
data/search_biomodel.gemspec
CHANGED
|
@@ -5,11 +5,11 @@
|
|
|
5
5
|
|
|
6
6
|
Gem::Specification.new do |s|
|
|
7
7
|
s.name = %q{search_biomodel}
|
|
8
|
-
s.version = "2.0
|
|
8
|
+
s.version = "2.1.0"
|
|
9
9
|
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
11
11
|
s.authors = ["Niall Beard"]
|
|
12
|
-
s.date = %q{2012-
|
|
12
|
+
s.date = %q{2012-03-20}
|
|
13
13
|
s.description = %q{Client package for creating, sending, recieving and consuming SOAP messages from BioModels search engine }
|
|
14
14
|
s.email = %q{beardn9@cs.man.ac.uk}
|
|
15
15
|
s.extra_rdoc_files = [
|
metadata
CHANGED
|
@@ -5,9 +5,9 @@ version: !ruby/object:Gem::Version
|
|
|
5
5
|
prerelease: false
|
|
6
6
|
segments:
|
|
7
7
|
- 2
|
|
8
|
+
- 1
|
|
8
9
|
- 0
|
|
9
|
-
|
|
10
|
-
version: 2.0.2
|
|
10
|
+
version: 2.1.0
|
|
11
11
|
platform: ruby
|
|
12
12
|
authors:
|
|
13
13
|
- Niall Beard
|
|
@@ -15,7 +15,7 @@ autorequire:
|
|
|
15
15
|
bindir: bin
|
|
16
16
|
cert_chain: []
|
|
17
17
|
|
|
18
|
-
date: 2012-
|
|
18
|
+
date: 2012-03-20 00:00:00 +00:00
|
|
19
19
|
default_executable:
|
|
20
20
|
dependencies:
|
|
21
21
|
- !ruby/object:Gem::Dependency
|