scout-gear 9.1.0 → 10.0.1
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- checksums.yaml +4 -4
- data/.vimproject +3 -3
- data/Rakefile +1 -2
- data/VERSION +1 -1
- data/lib/scout/offsite/exceptions.rb +9 -0
- data/lib/scout/offsite/ssh.rb +1 -0
- data/lib/scout/semaphore.rb +2 -0
- data/lib/scout/tsv/open.rb +1 -1
- data/lib/scout/tsv/parser.rb +1 -1
- data/lib/scout/tsv/persist/adapter.rb +2 -2
- data/lib/scout/tsv/persist.rb +1 -0
- data/lib/scout/tsv.rb +1 -1
- data/lib/scout/work_queue/exceptions.rb +18 -0
- data/lib/scout/work_queue.rb +1 -0
- data/lib/scout/workflow/definition.rb +1 -1
- data/lib/scout/workflow/step/config.rb +1 -1
- data/lib/scout/workflow/step.rb +2 -2
- data/lib/scout/workflow/task/inputs.rb +1 -1
- data/lib/scout/workflow/task.rb +2 -2
- data/lib/scout/workflow.rb +2 -2
- data/lib/scout-gear.rb +1 -10
- data/scout-gear.gemspec +8 -98
- data/test/scout/workflow/task/test_inputs.rb +0 -4
- metadata +7 -110
- data/lib/scout/cmd.rb +0 -347
- data/lib/scout/concurrent_stream.rb +0 -284
- data/lib/scout/config.rb +0 -168
- data/lib/scout/exceptions.rb +0 -151
- data/lib/scout/indiferent_hash/case_insensitive.rb +0 -30
- data/lib/scout/indiferent_hash/options.rb +0 -115
- data/lib/scout/indiferent_hash.rb +0 -96
- data/lib/scout/log/color.rb +0 -224
- data/lib/scout/log/color_class.rb +0 -269
- data/lib/scout/log/fingerprint.rb +0 -69
- data/lib/scout/log/progress/report.rb +0 -244
- data/lib/scout/log/progress/util.rb +0 -173
- data/lib/scout/log/progress.rb +0 -106
- data/lib/scout/log/trap.rb +0 -107
- data/lib/scout/log.rb +0 -441
- data/lib/scout/meta_extension.rb +0 -100
- data/lib/scout/misc/digest.rb +0 -63
- data/lib/scout/misc/filesystem.rb +0 -25
- data/lib/scout/misc/format.rb +0 -255
- data/lib/scout/misc/helper.rb +0 -31
- data/lib/scout/misc/insist.rb +0 -56
- data/lib/scout/misc/monitor.rb +0 -66
- data/lib/scout/misc/system.rb +0 -73
- data/lib/scout/misc.rb +0 -10
- data/lib/scout/named_array.rb +0 -138
- data/lib/scout/open/lock/lockfile.rb +0 -587
- data/lib/scout/open/lock.rb +0 -68
- data/lib/scout/open/remote.rb +0 -135
- data/lib/scout/open/stream.rb +0 -491
- data/lib/scout/open/util.rb +0 -244
- data/lib/scout/open.rb +0 -170
- data/lib/scout/path/find.rb +0 -204
- data/lib/scout/path/tmpfile.rb +0 -8
- data/lib/scout/path/util.rb +0 -127
- data/lib/scout/path.rb +0 -51
- data/lib/scout/persist/open.rb +0 -17
- data/lib/scout/persist/path.rb +0 -15
- data/lib/scout/persist/serialize.rb +0 -157
- data/lib/scout/persist.rb +0 -104
- data/lib/scout/resource/open.rb +0 -8
- data/lib/scout/resource/path.rb +0 -80
- data/lib/scout/resource/produce/rake.rb +0 -69
- data/lib/scout/resource/produce.rb +0 -151
- data/lib/scout/resource/scout.rb +0 -3
- data/lib/scout/resource/software.rb +0 -178
- data/lib/scout/resource/util.rb +0 -59
- data/lib/scout/resource.rb +0 -41
- data/lib/scout/simple_opt/accessor.rb +0 -54
- data/lib/scout/simple_opt/doc.rb +0 -126
- data/lib/scout/simple_opt/get.rb +0 -57
- data/lib/scout/simple_opt/parse.rb +0 -67
- data/lib/scout/simple_opt/setup.rb +0 -26
- data/lib/scout/simple_opt.rb +0 -5
- data/lib/scout/tmpfile.rb +0 -129
- data/test/scout/indiferent_hash/test_case_insensitive.rb +0 -16
- data/test/scout/indiferent_hash/test_options.rb +0 -46
- data/test/scout/log/test_progress.rb +0 -108
- data/test/scout/misc/test_digest.rb +0 -30
- data/test/scout/misc/test_filesystem.rb +0 -30
- data/test/scout/misc/test_insist.rb +0 -13
- data/test/scout/misc/test_system.rb +0 -21
- data/test/scout/open/test_lock.rb +0 -52
- data/test/scout/open/test_remote.rb +0 -25
- data/test/scout/open/test_stream.rb +0 -676
- data/test/scout/open/test_util.rb +0 -73
- data/test/scout/path/test_find.rb +0 -119
- data/test/scout/path/test_util.rb +0 -22
- data/test/scout/persist/test_open.rb +0 -37
- data/test/scout/persist/test_path.rb +0 -37
- data/test/scout/persist/test_serialize.rb +0 -114
- data/test/scout/resource/test_path.rb +0 -46
- data/test/scout/resource/test_produce.rb +0 -92
- data/test/scout/resource/test_software.rb +0 -24
- data/test/scout/resource/test_util.rb +0 -36
- data/test/scout/simple_opt/test_doc.rb +0 -16
- data/test/scout/simple_opt/test_get.rb +0 -11
- data/test/scout/simple_opt/test_parse.rb +0 -10
- data/test/scout/simple_opt/test_setup.rb +0 -77
- data/test/scout/test_cmd.rb +0 -85
- data/test/scout/test_concurrent_stream.rb +0 -29
- data/test/scout/test_config.rb +0 -66
- data/test/scout/test_indiferent_hash.rb +0 -26
- data/test/scout/test_log.rb +0 -32
- data/test/scout/test_meta_extension.rb +0 -80
- data/test/scout/test_misc.rb +0 -6
- data/test/scout/test_named_array.rb +0 -43
- data/test/scout/test_open.rb +0 -146
- data/test/scout/test_path.rb +0 -54
- data/test/scout/test_persist.rb +0 -186
- data/test/scout/test_resource.rb +0 -26
- data/test/scout/test_tmpfile.rb +0 -53
- /data/test/scout/{log/test_color.rb → test_offsite.rb} +0 -0
data/lib/scout/config.rb
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require_relative 'path'
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require_relative 'resource'
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require_relative 'resource/scout'
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module Scout::Config
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CACHE ||= IndiferentHash.setup({})
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GOT_KEYS=[]
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def self.add_entry(key, value, tokens)
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tokens = [tokens] unless Array === tokens
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tokens << "key:#{key}" unless tokens.include?("key:#{key}")
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CACHE[key.to_s] ||= []
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CACHE[key.to_s] << [tokens, value]
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end
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def self.load_file(file)
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Log.debug "Loading config file: #{ file }"
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TSV.traverse file, :type => :array do |line|
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next if line =~ /^#/
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key, value, *tokens = line.strip.split(/\s/)
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self.add_entry(key, value, tokens) if key
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end
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end
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def self.load_config
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Scout.etc.config.find_all.reverse.each do |file|
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self.load_file(file)
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end
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end
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def self.set(values, *tokens)
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if not Hash === values
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values = {values => tokens.shift}
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end
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values.each do |key,value|
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add_entry key, value, tokens
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end
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end
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def self.token_priority(token)
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token, _sep, priority = token.to_s.partition("::")
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if priority.nil? || priority.empty?
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type, _sep, rest = token.partition(":")
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priority = case type
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when "workflow"
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4
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when "task"
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3
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when "file"
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2
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when "line"
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1
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when "key"
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else
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10
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end
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else
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priority = priority.to_i
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end
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[token, priority]
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end
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def self.match(entries, give_token)
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priorities = {}
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entries.each do |tokens, value|
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best_prio = nil
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tokens = [tokens] unless Array === tokens
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tokens.each do |tok|
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tok, prio = token_priority tok
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next unless tok == give_token
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best_prio = prio if best_prio.nil? or best_prio > prio
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next if prio > best_prio
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priorities[prio] ||= []
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priorities[prio].unshift value
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end
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end if entries
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priorities
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end
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# For equal priorities the matching prioritizes tokens ealier in the list
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def self.get(key, *tokens)
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options = tokens.pop if Hash === tokens.last
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default = options.nil? ? nil : options[:default]
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tokens = ["key:" + key] if tokens.empty?
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tokens = tokens.flatten
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file, _sep, line = caller.reject{|l|
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l =~ /rbbt\/(?:resource\.rb|workflow\.rb)/ or
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l =~ /rbbt\/resource\/path\.rb/ or
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l =~ /rbbt\/util\/misc\.rb/ or
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l =~ /accessor\.rb/ or
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l =~ /progress-monitor\.rb/
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}.first.partition(":")
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File.expand_path(file)
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tokens << ("file:" << file)
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tokens << ("line:" << file << ":" << line.sub(/:in \`.*/,''))
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entries = CACHE[key.to_s]
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priorities = {}
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tokens.each do |token|
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token_prio = match entries, token.to_s
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token_prio.each do |prio, values|
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priorities[prio] ||= []
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priorities[prio].concat(values)
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end
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end
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value = priorities.empty? ? default : priorities.collect{|p| p }.sort_by{|p,v| p}.first.last.first
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value = false if value == 'false'
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Log.debug "Value #{value.inspect} for config key '#{ key }': #{tokens * ", "}"
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GOT_KEYS << [key, value, tokens]
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if String === value && m = value.match(/^env:(.*)/)
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variable = m.captures.first
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ENV[variable]
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elsif value == 'nil'
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nil
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else
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value
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end
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end
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def self.with_config
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saved_config = {}
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CACHE.each do |k,v|
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saved_config[k] = v.dup
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end
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saved_got_keys = GOT_KEYS.dup
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begin
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yield
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ensure
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CACHE.replace(saved_config)
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GOT_KEYS.replace(saved_got_keys)
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end
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end
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def self.process_config(config)
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if Path.is_filename?(config) && File.exist?(config)
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Scout::Config.load_file(config)
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elsif Scout.etc.config_profile[config].exists?
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Scout::Config.load_file(Scout.etc.config_profile[config].find)
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else
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key, value, *tokens = config.split(/\s/)
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tokens = tokens.collect do |tok|
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tok, _sep, prio = tok.partition("::")
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prio = "0" if prio.nil? or prio.empty?
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[tok, prio] * "::"
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end
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Scout::Config.set({key => value}, *tokens)
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end
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end
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self.load_config
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end
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data/lib/scout/exceptions.rb
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class ScoutDeprecated < StandardError; end
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class ScoutException < StandardError; end
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class FieldNotFoundError < StandardError;end
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class TryAgain < StandardError; end
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class StopInsist < Exception
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attr_accessor :exception
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def initialize(exception)
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@exception = exception
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end
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end
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class Aborted < StandardError; end
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class ParameterException < ScoutException; end
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class MissingParameterException < ParameterException
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def initialize(parameter)
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super("Missing parameter '#{parameter}'")
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end
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end
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class ProcessFailed < StandardError;
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attr_accessor :pid, :msg
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def initialize(pid = Process.pid, msg = nil)
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@pid = pid
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@msg = msg
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if @pid
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if @msg
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message = "Process #{@pid} failed - #{@msg}"
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else
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message = "Process #{@pid} failed"
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end
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else
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message = "Failed to run #{@msg}"
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end
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super(message)
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end
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end
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class ConcurrentStreamProcessFailed < ProcessFailed
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attr_accessor :concurrent_stream
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def initialize(pid = Process.pid, msg = nil, concurrent_stream = nil)
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super(pid, msg)
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@concurrent_stream = concurrent_stream
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end
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end
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class OpenURLError < StandardError; end
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class DontClose < Exception
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attr_accessor :payload
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def initialize(payload = nil)
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@payload = payload
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end
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end
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class KeepLocked < Exception
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attr_accessor :payload
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def initialize(payload)
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@payload = payload
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end
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end
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class KeepBar < Exception
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attr_accessor :payload
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def initialize(payload)
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@payload = payload
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end
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end
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class LockInterrupted < TryAgain; end
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class ClosedStream < StandardError; end
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class DoneProcessing < Exception
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attr_accessor :pid
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def initialize(pid = Process.pid)
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@pid = pid
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end
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def message
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"Done processing pid #{pid}"
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end
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end
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class WorkerException < ScoutException
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attr_accessor :worker_exception, :pid
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def initialize(worker_exception, pid)
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@worker_exception = worker_exception
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@pid = pid
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end
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end
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class SemaphoreInterrupted < TryAgain; end
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#class OpenGzipError < StandardError; end
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#
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#
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#class TryThis < StandardError
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# attr_accessor :payload
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# def initialize(payload = nil)
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# @payload = payload
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# end
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#end
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#
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#class SemaphoreInterrupted < TryAgain; end
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#
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#class RemoteServerError < StandardError; end
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#
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#class DependencyError < Aborted
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# def initialize(msg)
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# if defined? Step and Step === msg
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# step = msg
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# new_msg = [step.path, step.messages.last] * ": "
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# super(new_msg)
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# else
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# super(msg)
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# end
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# end
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#end
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#
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#class DependencyScoutException < ScoutException
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# def initialize(msg)
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# if defined? Step and Step === msg
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# step = msg
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#
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# new_msg = nil
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# new_msg = [step.path, step.messages.last] * ": "
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#
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# super(new_msg)
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# else
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# super(msg)
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# end
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# end
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#end
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#
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#
|
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#
|
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#
|
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class ResourceNotFound < ScoutException; end
|
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|
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class SSHProcessFailed < StandardError
|
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attr_accessor :host, :cmd
|
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def initialize(host, cmd)
|
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@host = host
|
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@cmd = cmd
|
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|
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message = "SSH server #{host} failed cmd '#{cmd}'"
|
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super(message)
|
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end
|
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end
|
@@ -1,30 +0,0 @@
|
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1
|
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module CaseInsensitiveHash
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2
|
-
|
3
|
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def self.setup(hash)
|
4
|
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hash.extend CaseInsensitiveHash
|
5
|
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end
|
6
|
-
|
7
|
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def downcase_keys
|
8
|
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@downcase_keys ||= begin
|
9
|
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down = {}
|
10
|
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keys.collect{|key|
|
11
|
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down[key.to_s.downcase] = key
|
12
|
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}
|
13
|
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down
|
14
|
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end
|
15
|
-
end
|
16
|
-
|
17
|
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def [](key, *rest)
|
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|
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value = super(key, *rest)
|
19
|
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return value unless value.nil?
|
20
|
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key_downcase = key.to_s.downcase
|
21
|
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super(downcase_keys[key_downcase])
|
22
|
-
end
|
23
|
-
|
24
|
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def values_at(*keys)
|
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|
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keys.collect do |key|
|
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|
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self[key]
|
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|
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end
|
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|
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end
|
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|
-
|
30
|
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end
|
@@ -1,115 +0,0 @@
|
|
1
|
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module IndiferentHash
|
2
|
-
def self.add_defaults(options, defaults = {})
|
3
|
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options = string2hash options if String === options
|
4
|
-
IndiferentHash.setup(options)
|
5
|
-
|
6
|
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defaults = string2hash defaults if String === defaults
|
7
|
-
|
8
|
-
defaults.each do |key, value|
|
9
|
-
next if options.include?(key)
|
10
|
-
|
11
|
-
options[key] = value
|
12
|
-
end
|
13
|
-
|
14
|
-
options
|
15
|
-
end
|
16
|
-
|
17
|
-
def self.process_options(hash, *keys)
|
18
|
-
IndiferentHash.setup(hash)
|
19
|
-
|
20
|
-
defaults = keys.pop if Hash === keys.last
|
21
|
-
hash = IndiferentHash.add_defaults hash, defaults if defaults
|
22
|
-
|
23
|
-
if keys.length == 1
|
24
|
-
hash.include?(keys.first.to_sym) ? hash.delete(keys.first.to_sym) : hash.delete(keys.first.to_s)
|
25
|
-
else
|
26
|
-
keys.collect do |key| hash.include?(key.to_sym) ? hash.delete(key.to_sym) : hash.delete(key.to_s) end
|
27
|
-
end
|
28
|
-
end
|
29
|
-
|
30
|
-
def self.pull_keys(hash, prefix)
|
31
|
-
new = {}
|
32
|
-
prefix = prefix.to_s
|
33
|
-
hash.keys.each do |key|
|
34
|
-
if key.to_s =~ /#{ prefix }_(.*)/
|
35
|
-
case
|
36
|
-
when String === key
|
37
|
-
new[$1] = hash.delete key
|
38
|
-
when Symbol === key
|
39
|
-
new[$1.to_sym] = hash.delete key
|
40
|
-
end
|
41
|
-
else
|
42
|
-
if key.to_s == prefix.to_s
|
43
|
-
new[key] = hash.delete key
|
44
|
-
end
|
45
|
-
end
|
46
|
-
end
|
47
|
-
|
48
|
-
IndiferentHash.setup(new)
|
49
|
-
end
|
50
|
-
|
51
|
-
def self.zip2hash(list1, list2)
|
52
|
-
hash = {}
|
53
|
-
list1.each_with_index do |e,i|
|
54
|
-
hash[e] = list2[i]
|
55
|
-
end
|
56
|
-
IndiferentHash.setup(hash)
|
57
|
-
end
|
58
|
-
|
59
|
-
def self.positional2hash(keys, *values)
|
60
|
-
if Hash === values.last
|
61
|
-
extra = values.pop
|
62
|
-
inputs = IndiferentHash.zip2hash(keys, values)
|
63
|
-
inputs.delete_if{|k,v| v.nil? or (String === v and v.empty?)}
|
64
|
-
inputs = IndiferentHash.add_defaults inputs, extra
|
65
|
-
inputs.delete_if{|k,v| not keys.include?(k) and not (Symbol === k ? keys.include?(k.to_s) : keys.include?(k.to_sym))}
|
66
|
-
inputs
|
67
|
-
else
|
68
|
-
IndiferentHash.zip2hash(keys, values)
|
69
|
-
end
|
70
|
-
end
|
71
|
-
|
72
|
-
def self.array2hash(array, default = nil)
|
73
|
-
hash = {}
|
74
|
-
array.each do |key, value|
|
75
|
-
value = default.dup if value.nil? and not default.nil?
|
76
|
-
hash[key] = value
|
77
|
-
end
|
78
|
-
IndiferentHash.setup(hash)
|
79
|
-
end
|
80
|
-
|
81
|
-
def self.process_to_hash(list)
|
82
|
-
result = yield list
|
83
|
-
zip2hash(list, result)
|
84
|
-
end
|
85
|
-
|
86
|
-
def self.hash2string(hash)
|
87
|
-
hash.sort_by{|k,v| k.to_s}.collect{|k,v|
|
88
|
-
next unless %w(Symbol String Float Fixnum Integer Numeric TrueClass FalseClass Module Class Object).include? v.class.to_s
|
89
|
-
[ Symbol === k ? ":" << k.to_s : k.to_s.chomp,
|
90
|
-
Symbol === v ? ":" << v.to_s : v.to_s.chomp] * "="
|
91
|
-
}.compact * "#"
|
92
|
-
end
|
93
|
-
|
94
|
-
def self.string2hash(string)
|
95
|
-
options = {}
|
96
|
-
|
97
|
-
string.split('#').each do |str|
|
98
|
-
key, _, value = str.partition "="
|
99
|
-
|
100
|
-
key = key[1..-1].to_sym if key[0] == ":"
|
101
|
-
|
102
|
-
options[key] = true and next if value.empty?
|
103
|
-
options[key] = value[1..-1].to_sym and next if value[0] == ":"
|
104
|
-
options[key] = Regexp.new(/#{value[1..-2]}/) and next if value[0] == "/" and value[-1] == "/"
|
105
|
-
options[key] = value[1..-2] and next if value =~ /^['"].*['"]$/
|
106
|
-
options[key] = value.to_i and next if value =~ /^\d+$/
|
107
|
-
options[key] = value.to_f and next if value =~ /^\d*\.\d+$/
|
108
|
-
options[key] = true and next if value == "true"
|
109
|
-
options[key] = false and next if value == "false"
|
110
|
-
options[key] = value
|
111
|
-
end
|
112
|
-
|
113
|
-
IndiferentHash.setup(options)
|
114
|
-
end
|
115
|
-
end
|
@@ -1,96 +0,0 @@
|
|
1
|
-
require_relative 'indiferent_hash/options'
|
2
|
-
require_relative 'indiferent_hash/case_insensitive'
|
3
|
-
|
4
|
-
module IndiferentHash
|
5
|
-
|
6
|
-
def self.setup(hash)
|
7
|
-
hash.extend IndiferentHash
|
8
|
-
hash
|
9
|
-
end
|
10
|
-
|
11
|
-
def merge(other)
|
12
|
-
new = self.dup
|
13
|
-
IndiferentHash.setup(new)
|
14
|
-
other.each do |k,value|
|
15
|
-
new[k] = value
|
16
|
-
end
|
17
|
-
new
|
18
|
-
end
|
19
|
-
|
20
|
-
def []=(key,value)
|
21
|
-
delete(key)
|
22
|
-
super(key,value)
|
23
|
-
end
|
24
|
-
|
25
|
-
def _default?
|
26
|
-
@_default ||= self.default or self.default_proc
|
27
|
-
end
|
28
|
-
|
29
|
-
def [](key)
|
30
|
-
res = super(key)
|
31
|
-
return res unless res.nil? or (_default? and not keys.include? key)
|
32
|
-
|
33
|
-
case key
|
34
|
-
when Symbol, Module
|
35
|
-
super(key.to_s)
|
36
|
-
when String
|
37
|
-
super(key.to_sym)
|
38
|
-
else
|
39
|
-
res
|
40
|
-
end
|
41
|
-
end
|
42
|
-
|
43
|
-
def values_at(*key_list)
|
44
|
-
key_list.inject([]){|acc,key| acc << self[key]}
|
45
|
-
end
|
46
|
-
|
47
|
-
def include?(key)
|
48
|
-
case key
|
49
|
-
when Symbol, Module
|
50
|
-
super(key) || super(key.to_s)
|
51
|
-
when String
|
52
|
-
super(key) || super(key.to_sym)
|
53
|
-
else
|
54
|
-
super(key)
|
55
|
-
end
|
56
|
-
end
|
57
|
-
|
58
|
-
def delete(key)
|
59
|
-
case key
|
60
|
-
when Symbol, Module
|
61
|
-
v = super(key)
|
62
|
-
v.nil? ? super(key.to_s) : v
|
63
|
-
when String
|
64
|
-
v = super(key)
|
65
|
-
v.nil? ? super(key.to_sym) : v
|
66
|
-
else
|
67
|
-
super(key)
|
68
|
-
end
|
69
|
-
end
|
70
|
-
|
71
|
-
def clean_version
|
72
|
-
clean = {}
|
73
|
-
each do |k,v|
|
74
|
-
clean[k.to_s] = v unless clean.include? k.to_s
|
75
|
-
end
|
76
|
-
clean
|
77
|
-
end
|
78
|
-
|
79
|
-
def slice(*list)
|
80
|
-
ext_list = []
|
81
|
-
list.each do |e|
|
82
|
-
case e
|
83
|
-
when Symbol
|
84
|
-
ext_list << e
|
85
|
-
ext_list << e.to_s
|
86
|
-
when String
|
87
|
-
ext_list << e
|
88
|
-
ext_list << e.to_sym
|
89
|
-
else
|
90
|
-
ext_list << e
|
91
|
-
end
|
92
|
-
end
|
93
|
-
IndiferentHash.setup(super(*ext_list))
|
94
|
-
end
|
95
|
-
end
|
96
|
-
|