scout-gear 8.1.0 → 9.0.0

data/share/templates/command

@@ -0,0 +1,25 @@
+#!/usr/bin/env ruby
+
+require 'scout'
+
+$0 = "scout #{$previous_commands.any? ? $previous_commands*" " + " " : "" }#{ File.basename(__FILE__) }" if $previous_commands
+
+options = SOPT.setup <<EOF
+
+Description of the tool
+
+$ #{$0} [<options>] <filename> [<other|->]*
+
+-h--help Print this help
+EOF
+if options[:help]
+  if defined? scout_usage
+    scout_usage 
+  else
+    puts SOPT.doc
+  end
+  exit 0
+end
+
+
+

data/share/templates/workflow.rb

@@ -0,0 +1,14 @@
+Misc.add_libdir if __FILE__ == $0
+
+#require 'scout/sources/MODULE'
+
+module MODULE
+  extend Workflow
+
+
+end
+
+#require 'MODULE/tasks/basic.rb'
+
+#require 'scout/knowledge_base/MODULE'
+#require 'scout/entity/MODULE'

data/test/scout/offsite/test_step.rb

@@ -19,7 +19,6 @@ TestWF.directory = Path.setup("#{tmpdir.offsite.TestWF}")
 
       job = wf.job(:string)
 
-      sss 0
       off = OffsiteStep.setup job, server: 'localhost', workflow_name: wffile
 
       refute off.done?

data/test/scout/test_persist.rb

@@ -138,8 +138,8 @@ class TestPersist < Test::Unit::TestCase
             Open.write(output2, io)
           end
         end
-        Process.wait pid1
-        Process.wait pid2
+        Process.waitpid pid1
+        Process.waitpid pid2
 
         assert File.exist?(output1) || File.exist?(output2)
         [pid1, pid2].zip([output2, output1]).each do |pid, found|

data/test/scout/test_work_queue.rb

@@ -56,7 +56,7 @@ class TestWorkQueue < Test::Unit::TestCase
       end
     end
 
-    Process.wait pid
+    Process.waitpid pid
     q.close
 
     q.join

data/test/scout/tsv/test_parser.rb

@@ -95,6 +95,27 @@ k a|A b|B
     assert_equal 'a', tsv['k'][0][0]
   end
 
+  def test_parse_head
+    content =<<-EOF
+#: :sep=" "#:type=:double
+#Key ValueA ValueB
+k a|A b|B
+k1 a|A b|B
+k2 a|A b|B
+k3 a|A b|B
+k4 a|A b|B
+    EOF
+    content = StringIO.new content
+
+    tsv = TSV.parse(content, :head => 2)
+    assert_equal 2, tsv.keys.length
+
+    content.rewind
+    tsv = TSV.parse(content, :head => 3)
+    assert_equal 3, tsv.keys.length
+  end
+
+
   def test_parse_fields
     content =<<-EOF
 #: :sep=" "#:type=:double

data/test/scout/workflow/step/test_info.rb

@@ -41,6 +41,5 @@ class TestStepInfo < Test::Unit::TestCase
       refute Path === step1.info[:inputs][0]
 
     end
-
   end
 end

data/test/scout/workflow/task/test_dependencies.rb

@@ -20,6 +20,8 @@ class TestTaskDependencies < Test::Unit::TestCase
 
     assert_equal 18, wf.job(:step2, :input1 => 2, "TaskInputs#step1" => step1_job).exec
 
+    assert_equal [step1_job.path], wf.job(:step2, :input1 => 2, "TaskInputs#step1" => step1_job).overriden_deps.collect{|d| d.path }
+
     assert_equal 18, wf.job(:step2, "TaskInputs#step1" => step1_job).exec
   end
 

data/test/scout/workflow/task/test_inputs.rb

@@ -111,7 +111,6 @@ class TestTaskInput < Test::Unit::TestCase
   def test_save_and_load
     task = self.example_task
 
-    sss 0
     TmpFile.with_file("2\n3") do |integer_array_file|
       inputs = {:string => "String", :integer => 2, :integer_array => integer_array_file, :float_array => %w(1.1 2.2)}
       original_digest =  task.process_inputs(inputs).last

data/test/scout/workflow/test_definition.rb

@@ -1,7 +1,7 @@
 require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
 require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
 
-class TestClass < Test::Unit::TestCase
+class TestWorkflowDefinition < Test::Unit::TestCase
   def test_function_task
     wf = Workflow.annonymous_workflow do
       self.name = "StringLength"

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: scout-gear
 version: !ruby/object:Gem::Version
-  version: 8.1.0
+  version: 9.0.0
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2023-06-15 00:00:00.000000000 Z
+date: 2023-06-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: term-ansicolor
@@ -203,6 +203,7 @@ files:
 - lib/scout/persist/path.rb
 - lib/scout/persist/serialize.rb
 - lib/scout/resource.rb
+- lib/scout/resource/open.rb
 - lib/scout/resource/path.rb
 - lib/scout/resource/produce.rb
 - lib/scout/resource/produce/rake.rb
@@ -252,6 +253,7 @@ files:
 - lib/scout/workflow/step/dependencies.rb
 - lib/scout/workflow/step/file.rb
 - lib/scout/workflow/step/info.rb
+- lib/scout/workflow/step/inputs.rb
 - lib/scout/workflow/step/load.rb
 - lib/scout/workflow/step/progress.rb
 - lib/scout/workflow/step/provenance.rb
@@ -269,6 +271,8 @@ files:
 - scout_commands/glob
 - scout_commands/offsite
 - scout_commands/rbbt
+- scout_commands/resource/produce
+- scout_commands/template
 - scout_commands/update
 - scout_commands/workflow/info
 - scout_commands/workflow/install
@@ -277,6 +281,8 @@ files:
 - share/color/color_names
 - share/color/diverging_colors.hex
 - share/software/install_helpers
+- share/templates/command
+- share/templates/workflow.rb
 - test/scout/indiferent_hash/test_case_insensitive.rb
 - test/scout/indiferent_hash/test_options.rb
 - test/scout/log/test_color.rb