scout-gear 7.3.0 → 8.1.0
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- checksums.yaml +4 -4
- data/.vimproject +44 -16
- data/Rakefile +6 -1
- data/VERSION +1 -1
- data/bin/scout +21 -7
- data/doc/lib/scout/path.md +35 -0
- data/doc/lib/scout/workflow/task.md +13 -0
- data/lib/rbbt-scout.rb +1 -0
- data/lib/scout/cmd.rb +24 -25
- data/lib/scout/concurrent_stream.rb +59 -39
- data/lib/scout/config.rb +1 -1
- data/lib/scout/exceptions.rb +10 -0
- data/lib/scout/log/color.rb +15 -12
- data/lib/scout/log/progress/report.rb +8 -6
- data/lib/scout/log/progress/util.rb +61 -54
- data/lib/scout/log/progress.rb +1 -1
- data/lib/scout/log/trap.rb +107 -0
- data/lib/scout/log.rb +115 -52
- data/lib/scout/meta_extension.rb +47 -6
- data/lib/scout/misc/digest.rb +12 -3
- data/lib/scout/misc/format.rb +24 -7
- data/lib/scout/misc/insist.rb +1 -1
- data/lib/scout/misc/monitor.rb +22 -0
- data/lib/scout/misc/system.rb +58 -0
- data/lib/scout/named_array.rb +73 -3
- data/lib/scout/offsite/ssh.rb +171 -0
- data/lib/scout/offsite/step.rb +83 -0
- data/lib/scout/offsite/sync.rb +55 -0
- data/lib/scout/offsite.rb +3 -0
- data/lib/scout/open/lock/lockfile.rb +587 -0
- data/lib/scout/open/lock.rb +9 -2
- data/lib/scout/open/remote.rb +16 -1
- data/lib/scout/open/stream.rb +146 -83
- data/lib/scout/open/util.rb +22 -3
- data/lib/scout/open.rb +5 -4
- data/lib/scout/path/find.rb +24 -11
- data/lib/scout/path/util.rb +40 -0
- data/lib/scout/persist/serialize.rb +19 -6
- data/lib/scout/persist.rb +29 -13
- data/lib/scout/resource/path.rb +57 -0
- data/lib/scout/resource/produce.rb +0 -8
- data/lib/scout/resource/util.rb +12 -5
- data/lib/scout/tmpfile.rb +7 -8
- data/lib/scout/tsv/attach.rb +177 -0
- data/lib/scout/tsv/change_id.rb +40 -0
- data/lib/scout/tsv/dumper.rb +74 -46
- data/lib/scout/tsv/index.rb +85 -87
- data/lib/scout/tsv/open.rb +160 -85
- data/lib/scout/tsv/parser.rb +142 -80
- data/lib/scout/tsv/path.rb +1 -2
- data/lib/scout/tsv/persist/adapter.rb +15 -45
- data/lib/scout/tsv/persist/fix_width_table.rb +3 -0
- data/lib/scout/tsv/persist/tokyocabinet.rb +6 -1
- data/lib/scout/tsv/persist.rb +4 -0
- data/lib/scout/tsv/stream.rb +204 -0
- data/lib/scout/tsv/transformer.rb +152 -0
- data/lib/scout/tsv/traverse.rb +96 -92
- data/lib/scout/tsv/util/filter.rb +9 -0
- data/lib/scout/tsv/util/reorder.rb +81 -0
- data/lib/scout/tsv/util/select.rb +78 -33
- data/lib/scout/tsv/util/unzip.rb +86 -0
- data/lib/scout/tsv/util.rb +60 -11
- data/lib/scout/tsv.rb +34 -4
- data/lib/scout/work_queue/socket.rb +6 -1
- data/lib/scout/work_queue/worker.rb +5 -2
- data/lib/scout/work_queue.rb +51 -20
- data/lib/scout/workflow/definition.rb +23 -3
- data/lib/scout/workflow/deployment/orchestrator.rb +245 -0
- data/lib/scout/workflow/deployment.rb +1 -0
- data/lib/scout/workflow/step/dependencies.rb +56 -10
- data/lib/scout/workflow/step/file.rb +5 -0
- data/lib/scout/workflow/step/info.rb +40 -7
- data/lib/scout/workflow/step/load.rb +1 -1
- data/lib/scout/workflow/step/provenance.rb +9 -7
- data/lib/scout/workflow/step/status.rb +43 -0
- data/lib/scout/workflow/step.rb +160 -49
- data/lib/scout/workflow/task/dependencies.rb +114 -0
- data/lib/scout/workflow/task/inputs.rb +40 -32
- data/lib/scout/workflow/task.rb +38 -102
- data/lib/scout/workflow/usage.rb +48 -18
- data/lib/scout/workflow.rb +4 -2
- data/lib/scout-gear.rb +2 -0
- data/lib/scout.rb +6 -0
- data/scout-gear.gemspec +52 -23
- data/scout_commands/doc +37 -0
- data/scout_commands/find +1 -0
- data/scout_commands/offsite +30 -0
- data/scout_commands/update +29 -0
- data/scout_commands/workflow/info +15 -3
- data/scout_commands/workflow/install +102 -0
- data/scout_commands/workflow/task +57 -9
- data/test/scout/offsite/test_ssh.rb +15 -0
- data/test/scout/offsite/test_step.rb +33 -0
- data/test/scout/offsite/test_sync.rb +36 -0
- data/test/scout/offsite/test_task.rb +0 -0
- data/test/scout/open/test_stream.rb +60 -58
- data/test/scout/path/test_find.rb +10 -1
- data/test/scout/resource/test_path.rb +6 -0
- data/test/scout/resource/test_produce.rb +15 -0
- data/test/scout/test_meta_extension.rb +25 -0
- data/test/scout/test_named_array.rb +24 -0
- data/test/scout/test_persist.rb +9 -2
- data/test/scout/test_tsv.rb +229 -2
- data/test/scout/test_work_queue.rb +65 -41
- data/test/scout/tsv/persist/test_tokyocabinet.rb +29 -1
- data/test/scout/tsv/test_attach.rb +227 -0
- data/test/scout/tsv/test_change_id.rb +98 -0
- data/test/scout/tsv/test_dumper.rb +1 -1
- data/test/scout/tsv/test_index.rb +49 -3
- data/test/scout/tsv/test_open.rb +160 -2
- data/test/scout/tsv/test_parser.rb +33 -2
- data/test/scout/tsv/test_persist.rb +2 -0
- data/test/scout/tsv/test_stream.rb +200 -0
- data/test/scout/tsv/test_transformer.rb +120 -0
- data/test/scout/tsv/test_traverse.rb +88 -3
- data/test/scout/tsv/test_util.rb +1 -0
- data/test/scout/tsv/util/test_reorder.rb +94 -0
- data/test/scout/tsv/util/test_select.rb +25 -11
- data/test/scout/tsv/util/test_unzip.rb +112 -0
- data/test/scout/work_queue/test_socket.rb +0 -1
- data/test/scout/workflow/deployment/test_orchestrator.rb +272 -0
- data/test/scout/workflow/step/test_dependencies.rb +68 -0
- data/test/scout/workflow/step/test_info.rb +18 -0
- data/test/scout/workflow/step/test_status.rb +30 -0
- data/test/scout/workflow/task/test_dependencies.rb +355 -0
- data/test/scout/workflow/task/test_inputs.rb +67 -14
- data/test/scout/workflow/test_definition.rb +18 -0
- data/test/scout/workflow/test_documentation.rb +24 -0
- data/test/scout/workflow/test_step.rb +112 -3
- data/test/scout/workflow/test_task.rb +0 -151
- data/test/scout/workflow/test_usage.rb +33 -6
- data/test/test_scout.rb +9 -0
- metadata +100 -8
- data/scout_commands/workflow/task_old +0 -706
@@ -0,0 +1,120 @@
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require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
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require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
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require 'scout/tsv'
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class TestTSVTransformer < Test::Unit::TestCase
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def test_traverse
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |file|
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parser = TSV::Parser.new file
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dumper = TSV::Dumper.new :key_field => "Key", :fields => ["Values"], type: :flat
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dumper.init
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trans = TSV::Transformer.new parser, dumper
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dumper = trans.traverse do |k,values|
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[k, values.flatten]
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end
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tsv = trans.tsv
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assert_equal %w(A1 A11 B1 B11), tsv['row1']
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end
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end
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def test_each
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |file|
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parser = TSV::Parser.new file
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dumper = TSV::Dumper.new :key_field => "Key", :fields => ["Values"], type: :flat
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dumper.init
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trans = TSV::Transformer.new parser, dumper
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dumper = trans.each do |k,values|
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values.replace values.flatten
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end
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trans["row3"] = %w(A3 A33)
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tsv = trans.tsv
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assert_equal %w(A1 A11 B1 B11), tsv['row1']
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assert_equal %w(A3 A33), tsv['row3']
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end
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end
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def test_no_dumper_no_parser
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |file|
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trans = TSV::Transformer.new file
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trans.key_field = "Key"
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trans.fields = ["Values"]
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trans.type = :flat
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trans.sep = "\t"
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trans["row3"] = %w(A3 A33)
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trans.each do |k,values|
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values.replace values.flatten
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end
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tsv = trans.tsv
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assert_equal %w(A1 A11 B1 B11), tsv['row1']
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assert_equal %w(A3 A33), tsv['row3']
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end
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end
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def test_to_list
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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tsv = TSV.open(content)
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assert_equal "A1", tsv.to_list["row1"]["ValueA"]
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assert_equal "B2", tsv.to_list["row2"]["ValueB"]
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end
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def test_to_single
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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tsv = TSV.open(content)
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assert_equal "A1", tsv.to_single["row1"]
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assert_equal "A2", tsv.to_single["row2"]
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end
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def test_to_flat
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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tsv = TSV.open(content)
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assert_equal %w(A1 A11 B1 B11), tsv.to_flat["row1"]
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end
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end
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row2 AA BB Id33
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EOF
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sss 0
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tsv = TmpFile.with_file(content) do |filename|
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TSV.open(filename, :persist => true)
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end
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@@ -31,18 +30,26 @@ row2 AA BB Id33
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assert_equal ["Id3", "B"], res["row2"]
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res = {}
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tsv.traverse "OtherID", %w(Id ValueB), one2one:
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tsv.traverse "OtherID", %w(Id ValueB), one2one: :strict do |k,v|
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res[k] = v
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end
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assert_equal [[nil], %w(BB)], res["Id33"]
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res = {}
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tsv.traverse "OtherID", %w(Id ValueB), one2one:
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tsv.traverse "OtherID", %w(Id ValueB), one2one: :strict, type: :list do |k,v|
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res[k] = v
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end
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assert_equal ["row2", "B"], res["Id3"]
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assert_equal [nil, "BB"], res["Id33"]
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res = {}
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tsv.traverse "OtherID", %w(Id ValueB), one2one: true, type: :list do |k,v|
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res[k] = v
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end
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assert_equal ["row2", "B"], res["Id3"]
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assert_equal ["row2", "BB"], res["Id33"]
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tsv.traverse "OtherID", %w(Id ValueB), one2one: false, type: :list do |k,v|
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res[k] = v
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end
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@@ -57,6 +64,36 @@ row2 AA BB Id33
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assert_equal %w(Id ValueA ValueB), field_names
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end
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def test_tsv_traverse_all
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content =<<-'EOF'
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#: :sep=/\s+/#:type=:double
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#Id ValueA ValueB OtherID
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row1 a|aa|aaa b Id1|Id2
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row2 A B Id3
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row2 AA BB Id33
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EOF
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tsv = TmpFile.with_file(content) do |filename|
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TSV.open(filename, :persist => true)
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end
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all_values = []
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tsv.traverse "ValueA", :all do |k,v|
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all_values.concat(v)
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end
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assert_include all_values.flatten, "row1"
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assert_include all_values.flatten, "a"
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assert_include all_values.flatten, "aaa"
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all_values = []
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tsv.traverse "Id", :all do |k,v|
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all_values.concat(v)
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end
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assert_include all_values.flatten, "row1"
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assert_include all_values.flatten, "a"
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assert_include all_values.flatten, "aaa"
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end
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def test_tsv_traverse_list
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content =<<-'EOF'
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#: :sep=/\s+/#:type=:list
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@@ -112,5 +149,53 @@ row2 A
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end
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assert_equal [["row1"]], res["a"]
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end
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def test_traverse_reorder_one2one
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content =<<-'EOF'
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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tsv = TmpFile.with_file(content) do |filename|
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TSV.open(filename, :persist => true)
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end
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res = {}
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tsv.traverse "ValueA", one2one: true do |k,v|
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res[k] = v
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end
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assert_include res["A2"][0], "row2"
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end
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def test_traverse_select
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content =<<-'EOF'
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |filename|
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tsv = TSV.open(filename, :persist => true, select: "B1")
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assert_equal %w(row1), tsv.keys
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tsv = TSV.open(filename, :persist => true, select: "B2")
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assert_equal %w(row2), tsv.keys
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tsv = TSV.open(filename, :persist => true, select: "B1")
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192
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assert_equal %w(row1), tsv.keys
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tsv = TSV.open(filename, :persist => true, select: "B2")
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assert_equal %w(row2), tsv.keys
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end
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end
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end
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data/test/scout/tsv/test_util.rb
CHANGED
@@ -0,0 +1,94 @@
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require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
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require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
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3
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+
|
4
|
+
require 'scout/tsv'
|
5
|
+
|
6
|
+
class TestReorder < Test::Unit::TestCase
|
7
|
+
def test_reorder
|
8
|
+
content =<<-'EOF'
|
9
|
+
#: :sep=/\s+/#:type=:double
|
10
|
+
#Id ValueA ValueB OtherID
|
11
|
+
row1 a1|a2 b1|b2 Id1|Id2
|
12
|
+
row2 A1|A3 B1|B3 Id1|Id3
|
13
|
+
EOF
|
14
|
+
|
15
|
+
tsv = TmpFile.with_file(content) do |filename|
|
16
|
+
TSV.open(filename)
|
17
|
+
end
|
18
|
+
|
19
|
+
r = tsv.reorder "OtherID", %w(ValueB Id)
|
20
|
+
|
21
|
+
assert_equal %w(row1 row2), r["Id1"]["Id"]
|
22
|
+
assert_equal %w(row2), r["Id3"]["Id"]
|
23
|
+
end
|
24
|
+
|
25
|
+
def test_reorder_list
|
26
|
+
content =<<-'EOF'
|
27
|
+
#: :sep=/\s+/#:type=:list
|
28
|
+
#Id ValueA ValueB OtherID
|
29
|
+
row1 a1 b1 Id1
|
30
|
+
row2 A1 B1 Id1
|
31
|
+
EOF
|
32
|
+
|
33
|
+
tsv = TmpFile.with_file(content) do |filename|
|
34
|
+
TSV.open(filename)
|
35
|
+
end
|
36
|
+
|
37
|
+
r = tsv.reorder "ValueB"
|
38
|
+
|
39
|
+
assert_equal "row1", r["b1"]["Id"]
|
40
|
+
assert_equal "row2", r["B1"]["Id"]
|
41
|
+
end
|
42
|
+
|
43
|
+
def test_reorder_single
|
44
|
+
content =<<-'EOF'
|
45
|
+
#: :sep=/\s+/#:type=:single
|
46
|
+
#Id ValueA
|
47
|
+
row1 a1
|
48
|
+
row2 A1
|
49
|
+
EOF
|
50
|
+
|
51
|
+
tsv = TmpFile.with_file(content) do |filename|
|
52
|
+
TSV.open(filename)
|
53
|
+
end
|
54
|
+
|
55
|
+
r = tsv.reorder "ValueA"
|
56
|
+
|
57
|
+
assert_equal "row1", r["a1"]
|
58
|
+
assert_equal "row2", r["A1"]
|
59
|
+
end
|
60
|
+
|
61
|
+
def test_transpose
|
62
|
+
content =<<-EOF
|
63
|
+
#: :type=:list
|
64
|
+
#Row vA vB vID
|
65
|
+
row1 a b Id1
|
66
|
+
row2 A B Id3
|
67
|
+
row3 a C Id4
|
68
|
+
EOF
|
69
|
+
|
70
|
+
TmpFile.with_file(content) do |filename|
|
71
|
+
tsv = TSV.open(filename, :sep => /\s+/)
|
72
|
+
|
73
|
+
assert_equal %w(vA vB vID), tsv.transpose("Values").keys
|
74
|
+
assert_equal %w(Id1 Id3 Id4), tsv.transpose("Values")["vID"]
|
75
|
+
end
|
76
|
+
end
|
77
|
+
|
78
|
+
def test_column
|
79
|
+
content =<<-EOF
|
80
|
+
#Id ValueA ValueB ValueC
|
81
|
+
rowA A|AA B|BB C|CC
|
82
|
+
rowa a|aa b|BB C|CC
|
83
|
+
EOF
|
84
|
+
|
85
|
+
TmpFile.with_file(content) do |filename|
|
86
|
+
tsv = TSV.open(File.open(filename), :sep => /\s+/, :type => :double)
|
87
|
+
tsv = tsv.column("ValueA", cast: :downcase)
|
88
|
+
assert_equal %w(a aa), tsv["rowA"]
|
89
|
+
assert_equal %w(a aa), tsv["rowa"]
|
90
|
+
end
|
91
|
+
end
|
92
|
+
|
93
|
+
end
|
94
|
+
|
@@ -23,22 +23,36 @@ row2 AA BB Id33
|
|
23
23
|
assert_equal ['row2'], s.keys
|
24
24
|
end
|
25
25
|
|
26
|
-
def
|
26
|
+
def test_select_values
|
27
27
|
content =<<-'EOF'
|
28
|
-
#: :sep
|
29
|
-
#
|
30
|
-
row1
|
31
|
-
row2
|
28
|
+
#: :sep=" "
|
29
|
+
#ID ValueA ValueB
|
30
|
+
row1 A1|A11 B1|B11
|
31
|
+
row2 A2|A22 B2|B22
|
32
32
|
EOF
|
33
33
|
|
34
|
-
tsv =
|
35
|
-
|
36
|
-
|
34
|
+
tsv = TSV.open(content)
|
35
|
+
|
36
|
+
assert TSV.select("row1", tsv["row1"], "A1")
|
37
|
+
refute TSV.select("row2", tsv["row2"], "A1")
|
38
|
+
assert TSV.select("row2", tsv["row2"], "A2")
|
37
39
|
|
38
|
-
|
40
|
+
assert TSV.select("row1", tsv["row1"], "B1")
|
41
|
+
refute TSV.select("row2", tsv["row2"], "B1")
|
42
|
+
|
43
|
+
refute TSV.select("row1", tsv["row1"], "B1", invert: true)
|
44
|
+
assert TSV.select("row2", tsv["row2"], "B1", invert: true)
|
45
|
+
|
46
|
+
assert TSV.select("row1", tsv["row1"], {"ValueB" => "B1"})
|
47
|
+
refute TSV.select("row2", tsv["row2"], {"ValueB" => "B1"})
|
48
|
+
|
49
|
+
tsv.with_unnamed do
|
50
|
+
assert TSV.select("row1", tsv["row1"], {"ValueB" => "B1"}, fields: tsv.fields)
|
51
|
+
refute TSV.select("row2", tsv["row2"], {"ValueB" => "B1"}, fields: tsv.fields)
|
52
|
+
end
|
39
53
|
|
40
|
-
|
41
|
-
|
54
|
+
assert TSV.select("row1", tsv["row1"], "B1", field: "ValueB")
|
55
|
+
refute TSV.select("row2", tsv["row2"], "B1", field: "ValueB")
|
42
56
|
end
|
43
57
|
end
|
44
58
|
|
@@ -0,0 +1,112 @@
|
|
1
|
+
require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
|
2
|
+
require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
|
3
|
+
|
4
|
+
require 'scout/tsv'
|
5
|
+
class TestTSVUnzip < Test::Unit::TestCase
|
6
|
+
def test_unzip
|
7
|
+
content1 =<<-EOF
|
8
|
+
#: :sep=" "
|
9
|
+
#ID ValueA ValueB
|
10
|
+
row1 A1|A11 B1|B11
|
11
|
+
row2 A2|A22 B2|B22
|
12
|
+
EOF
|
13
|
+
|
14
|
+
tsv = TSV.open(content1)
|
15
|
+
unzip = tsv.unzip("ValueA", delete: true)
|
16
|
+
assert_equal "B1", unzip["row1:A1"]["ValueB"]
|
17
|
+
assert_equal "B22", unzip["row2:A22"]["ValueB"]
|
18
|
+
end
|
19
|
+
|
20
|
+
def test_unzip_list
|
21
|
+
content1 =<<-EOF
|
22
|
+
#: :sep=" "#:type=:list
|
23
|
+
#ID ValueA ValueB
|
24
|
+
row1 A1 B1
|
25
|
+
row2 A2 B2
|
26
|
+
EOF
|
27
|
+
|
28
|
+
tsv = TSV.open(content1)
|
29
|
+
unzip = tsv.unzip("ValueA", delete: true)
|
30
|
+
assert_equal "B1", unzip["row1:A1"]["ValueB"]
|
31
|
+
assert_equal "B2", unzip["row2:A2"]["ValueB"]
|
32
|
+
end
|
33
|
+
|
34
|
+
def test_unzip_merge
|
35
|
+
content1 =<<-EOF
|
36
|
+
#: :sep=" "
|
37
|
+
#ID ValueA ValueB
|
38
|
+
row1 A1|A11|A11 B1|B11|B11.1
|
39
|
+
row2 A2|A22|A22 B2|B22|B22.2
|
40
|
+
EOF
|
41
|
+
|
42
|
+
tsv = TSV.open(content1)
|
43
|
+
unzip = tsv.unzip("ValueA", delete: true, merge: true)
|
44
|
+
assert_equal ["B1"], unzip["row1:A1"]["ValueB"]
|
45
|
+
assert_equal ["B11", "B11.1"], unzip["row1:A11"]["ValueB"]
|
46
|
+
assert_equal ["B22", "B22.2"], unzip["row2:A22"]["ValueB"]
|
47
|
+
end
|
48
|
+
|
49
|
+
def test_unzip_merge_stream
|
50
|
+
content1 =<<-EOF
|
51
|
+
#: :sep=" "
|
52
|
+
#ID ValueA ValueB
|
53
|
+
row1 A1|A11|A11 B1|B11|B11.1
|
54
|
+
row2 A2|A22|A22 B2|B22|B22.2
|
55
|
+
EOF
|
56
|
+
|
57
|
+
tsv = TSV.open(content1)
|
58
|
+
unzip = tsv.unzip("ValueA", delete: true, merge: true, target: :stream).tsv
|
59
|
+
assert_equal ["B1"], unzip["row1:A1"]["ValueB"]
|
60
|
+
assert_equal ["B11", "B11.1"], unzip["row1:A11"]["ValueB"]
|
61
|
+
assert_equal ["B22", "B22.2"], unzip["row2:A22"]["ValueB"]
|
62
|
+
end
|
63
|
+
|
64
|
+
def test_unzip_merge_stream_parser
|
65
|
+
content1 =<<-EOF
|
66
|
+
#: :sep=" "
|
67
|
+
#ID ValueA ValueB
|
68
|
+
row1 A1|A11|A11 B1|B11|B11.1
|
69
|
+
row2 A2|A22|A22 B2|B22|B22.2
|
70
|
+
EOF
|
71
|
+
|
72
|
+
TmpFile.with_file(content1) do |filename|
|
73
|
+
unzip = TSV.unzip(filename, "ValueA", delete: true, merge: true, target: :stream).tsv
|
74
|
+
assert_equal ["B1"], unzip["row1:A1"]["ValueB"]
|
75
|
+
assert_equal ["B11", "B11.1"], unzip["row1:A11"]["ValueB"]
|
76
|
+
assert_equal ["B22", "B22.2"], unzip["row2:A22"]["ValueB"]
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
def test_unzip_merge_stream_parser_one2many
|
81
|
+
content1 =<<-EOF
|
82
|
+
#: :sep=" "
|
83
|
+
#ID ValueA ValueB
|
84
|
+
row1 A1|A11|A11 B1|B11|B11.1
|
85
|
+
row2 A2|A22|A22 B2|B22|B22.2
|
86
|
+
EOF
|
87
|
+
|
88
|
+
TmpFile.with_file(content1) do |filename|
|
89
|
+
unzip = TSV.unzip(filename, "ValueA", delete: true, merge: true, target: :stream, one2one: false).tsv
|
90
|
+
assert_equal ["B1", "B11", "B11.1"], unzip["row1:A1"]["ValueB"].uniq
|
91
|
+
assert_equal ["B1", "B11", "B11.1"], unzip["row1:A11"]["ValueB"].uniq
|
92
|
+
end
|
93
|
+
end
|
94
|
+
|
95
|
+
|
96
|
+
def test_unzip_target
|
97
|
+
content1 =<<-EOF
|
98
|
+
#: :sep=" "
|
99
|
+
#ID ValueA ValueB
|
100
|
+
row1 A1|A11|A11 B1|B11|B11.1
|
101
|
+
row2 A2|A22|A22 B2|B22|B22.2
|
102
|
+
EOF
|
103
|
+
|
104
|
+
tsv = TSV.open(content1)
|
105
|
+
unzip = TSV.setup({}, :key_field => "Key", :fields => %w(ValueA ValueB))
|
106
|
+
tsv.unzip("ValueA", delete: true, merge: true, target: unzip)
|
107
|
+
assert_equal ["B1"], unzip["row1:A1"]["ValueB"]
|
108
|
+
assert_equal ["B11", "B11.1"], unzip["row1:A11"]["ValueB"]
|
109
|
+
assert_equal ["B22", "B22.2"], unzip["row2:A22"]["ValueB"]
|
110
|
+
end
|
111
|
+
end
|
112
|
+
|