scout-gear 7.2.0 → 8.0.0
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- checksums.yaml +4 -4
- data/.vimproject +51 -6
- data/VERSION +1 -1
- data/bin/scout +6 -3
- data/lib/rbbt-scout.rb +1 -0
- data/lib/scout/cmd.rb +1 -1
- data/lib/scout/concurrent_stream.rb +33 -29
- data/lib/scout/config.rb +1 -1
- data/lib/scout/exceptions.rb +1 -0
- data/lib/scout/log/color.rb +4 -2
- data/lib/scout/log/progress/report.rb +1 -1
- data/lib/scout/log/progress/util.rb +71 -2
- data/lib/scout/log/progress.rb +1 -1
- data/lib/scout/log/trap.rb +107 -0
- data/lib/scout/log.rb +56 -21
- data/lib/scout/meta_extension.rb +13 -6
- data/lib/scout/misc/digest.rb +1 -1
- data/lib/scout/misc/format.rb +12 -0
- data/lib/scout/misc/helper.rb +31 -0
- data/lib/scout/misc/insist.rb +1 -1
- data/lib/scout/misc/monitor.rb +12 -1
- data/lib/scout/misc/system.rb +10 -0
- data/lib/scout/misc.rb +1 -0
- data/lib/scout/named_array.rb +65 -3
- data/lib/scout/open/lock/lockfile.rb +587 -0
- data/lib/scout/open/lock.rb +28 -2
- data/lib/scout/open/remote.rb +4 -0
- data/lib/scout/open/stream.rb +111 -42
- data/lib/scout/open/util.rb +13 -3
- data/lib/scout/path/find.rb +9 -1
- data/lib/scout/path/util.rb +35 -0
- data/lib/scout/persist/serialize.rb +18 -5
- data/lib/scout/persist.rb +60 -30
- data/lib/scout/resource/path.rb +53 -0
- data/lib/scout/resource/produce.rb +0 -8
- data/lib/scout/resource/util.rb +2 -1
- data/lib/scout/semaphore.rb +8 -1
- data/lib/scout/tmpfile.rb +7 -8
- data/lib/scout/tsv/attach.rb +177 -0
- data/lib/scout/tsv/change_id.rb +40 -0
- data/lib/scout/tsv/dumper.rb +85 -54
- data/lib/scout/tsv/index.rb +188 -20
- data/lib/scout/tsv/open.rb +182 -0
- data/lib/scout/tsv/parser.rb +200 -118
- data/lib/scout/tsv/path.rb +5 -6
- data/lib/scout/tsv/persist/adapter.rb +26 -37
- data/lib/scout/tsv/persist/fix_width_table.rb +327 -0
- data/lib/scout/tsv/persist/serialize.rb +117 -0
- data/lib/scout/tsv/persist/tokyocabinet.rb +6 -3
- data/lib/scout/tsv/persist.rb +4 -2
- data/lib/scout/tsv/transformer.rb +141 -0
- data/lib/scout/tsv/traverse.rb +136 -37
- data/lib/scout/tsv/util/filter.rb +312 -0
- data/lib/scout/tsv/util/process.rb +73 -0
- data/lib/scout/tsv/util/reorder.rb +81 -0
- data/lib/scout/tsv/util/select.rb +265 -0
- data/lib/scout/tsv/util/unzip.rb +86 -0
- data/lib/scout/tsv/util.rb +126 -19
- data/lib/scout/tsv.rb +28 -5
- data/lib/scout/work_queue/socket.rb +6 -1
- data/lib/scout/work_queue/worker.rb +5 -2
- data/lib/scout/work_queue.rb +15 -8
- data/lib/scout/workflow/definition.rb +29 -2
- data/lib/scout/workflow/step/dependencies.rb +24 -4
- data/lib/scout/workflow/step/info.rb +40 -5
- data/lib/scout/workflow/step/progress.rb +14 -0
- data/lib/scout/workflow/step/provenance.rb +8 -7
- data/lib/scout/workflow/step/status.rb +45 -0
- data/lib/scout/workflow/step.rb +104 -33
- data/lib/scout/workflow/task/inputs.rb +14 -20
- data/lib/scout/workflow/task.rb +86 -47
- data/lib/scout/workflow/usage.rb +10 -6
- data/scout-gear.gemspec +30 -3
- data/scout_commands/workflow/task +37 -9
- data/scout_commands/workflow/task_old +2 -2
- data/test/scout/open/test_stream.rb +61 -59
- data/test/scout/path/test_find.rb +10 -1
- data/test/scout/resource/test_produce.rb +15 -0
- data/test/scout/test_meta_extension.rb +25 -0
- data/test/scout/test_named_array.rb +18 -0
- data/test/scout/test_persist.rb +67 -0
- data/test/scout/test_tmpfile.rb +1 -1
- data/test/scout/test_tsv.rb +222 -3
- data/test/scout/test_work_queue.rb +21 -18
- data/test/scout/tsv/persist/test_adapter.rb +11 -1
- data/test/scout/tsv/persist/test_fix_width_table.rb +134 -0
- data/test/scout/tsv/persist/test_tokyocabinet.rb +29 -1
- data/test/scout/tsv/test_attach.rb +227 -0
- data/test/scout/tsv/test_change_id.rb +98 -0
- data/test/scout/tsv/test_dumper.rb +1 -1
- data/test/scout/tsv/test_index.rb +127 -3
- data/test/scout/tsv/test_open.rb +167 -0
- data/test/scout/tsv/test_parser.rb +45 -3
- data/test/scout/tsv/test_persist.rb +9 -0
- data/test/scout/tsv/test_transformer.rb +108 -0
- data/test/scout/tsv/test_traverse.rb +195 -3
- data/test/scout/tsv/test_util.rb +24 -0
- data/test/scout/tsv/util/test_filter.rb +188 -0
- data/test/scout/tsv/util/test_process.rb +47 -0
- data/test/scout/tsv/util/test_reorder.rb +94 -0
- data/test/scout/tsv/util/test_select.rb +58 -0
- data/test/scout/tsv/util/test_unzip.rb +112 -0
- data/test/scout/work_queue/test_socket.rb +0 -1
- data/test/scout/work_queue/test_worker.rb +63 -6
- data/test/scout/workflow/step/test_load.rb +3 -3
- data/test/scout/workflow/step/test_status.rb +31 -0
- data/test/scout/workflow/task/test_inputs.rb +14 -14
- data/test/scout/workflow/test_step.rb +13 -13
- data/test/scout/workflow/test_task.rb +168 -32
- data/test/scout/workflow/test_usage.rb +33 -6
- data/test/test_helper.rb +3 -1
- metadata +29 -2
@@ -29,15 +29,16 @@ class TestTSVParser < Test::Unit::TestCase
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assert_equal (1..10).collect{|v| [v,v] }, values
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end
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def
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def ___test_benchmark
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num = 10_000
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txt = num.times.inject(nil) do |acc,i|
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(acc.nil? ? "" : acc << "\n") << (0..10).collect{|v| v == 0 ? i : [v,v] * "|" } * "\t"
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end
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txt = StringIO.new(([txt] * (10))*"\n")
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Misc.benchmark
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Misc.benchmark 5 do
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txt.rewind
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#Misc.profile do
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data = TSV.parse_stream(txt, fix: true, type: :double, bar: true, merge: :concat)
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assert_equal num, data.size
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assert_equal 20, data['1'][0].length
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@@ -170,4 +171,45 @@ k a|A b|B
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assert_equal [["k", [%w(b B)]]], values
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end
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def test_parser_traverse_all
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content =<<-EOF
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Key ValueA ValueB
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k a|A b|B
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EOF
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content = StringIO.new content
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parser = TSV::Parser.new content, sep: " ", header_hash: ''
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assert_equal "Key", parser.key_field
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values = []
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parser.traverse key_field: "ValueA", fields: :all, type: :double do |k,v|
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values << v
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end
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assert_include values.flatten, 'a'
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end
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def test_parse_persist_serializer
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content =<<-EOF
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Key ValueA ValueB
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k 1 2
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EOF
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content = StringIO.new content
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TmpFile.with_file do |db|
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data = ScoutCabinet.open db, true, "HDB"
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TSV.parse content, sep: " ", header_hash: '', data: data, cast: :to_i, type: :list
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assert_equal [1, 2], data["k"]
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end
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TmpFile.with_file do |db|
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content.rewind
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data = ScoutCabinet.open db, true, "HDB"
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TSV.parse content, sep: " ", header_hash: '', data: data, cast: :to_i, type: :list, serializer: :float_array
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assert_equal [1.0, 2.0], data["k"]
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end
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end
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end
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EOF
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tsv = Persist.persist("TEST Persist TSV", :tsv) do
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TmpFile.with_file(content) do |filename|
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TSV.open(filename)
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end
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end
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assert_include tsv.keys, 'row1'
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assert_include tsv.keys, 'row2'
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tsv = Persist.persist("TEST Persist TSV", :tsv) do
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TmpFile.with_file(content) do |filename|
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TSV.open(filename)
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require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
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require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
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require 'scout/tsv'
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class TestTSVTransformer < Test::Unit::TestCase
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def test_traverse
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |file|
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parser = TSV::Parser.new file
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dumper = TSV::Dumper.new :key_field => "Key", :fields => ["Values"], type: :flat
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dumper.init
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trans = TSV::Transformer.new parser, dumper
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dumper = trans.traverse do |k,values|
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[k, values.flatten]
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end
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tsv = trans.tsv
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assert_equal %w(A1 A11 B1 B11), tsv['row1']
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end
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end
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def test_each
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |file|
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parser = TSV::Parser.new file
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dumper = TSV::Dumper.new :key_field => "Key", :fields => ["Values"], type: :flat
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dumper.init
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trans = TSV::Transformer.new parser, dumper
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dumper = trans.each do |k,values|
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values.replace values.flatten
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end
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trans["row3"] = %w(A3 A33)
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tsv = trans.tsv
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assert_equal %w(A1 A11 B1 B11), tsv['row1']
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assert_equal %w(A3 A33), tsv['row3']
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end
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end
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def test_no_dumper_no_parser
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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TmpFile.with_file(content) do |file|
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trans = TSV::Transformer.new file
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trans.key_field = "Key"
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trans.fields = ["Values"]
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trans.type = :flat
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trans.sep = "\t"
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trans["row3"] = %w(A3 A33)
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trans.each do |k,values|
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values.replace values.flatten
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end
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tsv = trans.tsv
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assert_equal %w(A1 A11 B1 B11), tsv['row1']
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assert_equal %w(A3 A33), tsv['row3']
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end
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end
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def test_to_list
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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tsv = TSV.open(content)
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assert_equal "A1", tsv.to_list["row1"]["ValueA"]
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assert_equal "B2", tsv.to_list["row2"]["ValueB"]
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end
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def test_to_single
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content =<<-EOF
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#: :sep=" "
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#ID ValueA ValueB
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row1 A1|A11 B1|B11
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row2 A2|A22 B2|B22
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EOF
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tsv = TSV.open(content)
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assert_equal "A1", tsv.to_single["row1"]
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assert_equal "A2", tsv.to_single["row2"]
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end
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end
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require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
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require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
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require 'scout/tsv'
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class TestTSVTraverse < Test::Unit::TestCase
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def test_tsv_traverse_double
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content =<<-'EOF'
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#: :sep=/\s+/#:type=:double
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#Id ValueA ValueB OtherID
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row1 a|aa|aaa b Id1|Id2
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row2 A B Id3
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row2 AA BB Id33
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EOF
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tsv = TmpFile.with_file(content) do |filename|
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TSV.open(filename, :persist => true)
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end
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res = {}
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tsv.traverse :key, %w(OtherID ValueB) do |k,v|
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res[k] = v
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end
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assert_equal [%w(Id3 Id33), %w(B BB)], res["row2"]
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res = {}
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tsv.traverse :key, %w(OtherID ValueB), type: :list do |k,v|
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res[k] = v
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end
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assert_equal ["Id3", "B"], res["row2"]
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res = {}
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tsv.traverse "OtherID", %w(Id ValueB), one2one: :strict do |k,v|
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res[k] = v
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end
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assert_equal [[nil], %w(BB)], res["Id33"]
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res = {}
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tsv.traverse "OtherID", %w(Id ValueB), one2one: :strict, type: :list do |k,v|
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res[k] = v
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end
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assert_equal ["row2", "B"], res["Id3"]
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assert_equal [nil, "BB"], res["Id33"]
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res = {}
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tsv.traverse "OtherID", %w(Id ValueB), one2one: true, type: :list do |k,v|
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res[k] = v
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end
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assert_equal ["row2", "B"], res["Id3"]
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assert_equal ["row2", "BB"], res["Id33"]
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tsv.traverse "OtherID", %w(Id ValueB), one2one: false, type: :list do |k,v|
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res[k] = v
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end
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assert_equal ["row2", "B"], res["Id3"]
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assert_equal [nil, "BB"], res["Id33"]
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res = {}
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key_name, field_names = tsv.traverse "OtherID" do |k,v|
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res[k] = v
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end
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assert_equal "OtherID", key_name
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assert_equal %w(Id ValueA ValueB), field_names
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end
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def test_tsv_traverse_all
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content =<<-'EOF'
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#: :sep=/\s+/#:type=:double
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#Id ValueA ValueB OtherID
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row1 a|aa|aaa b Id1|Id2
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row2 A B Id3
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row2 AA BB Id33
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EOF
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tsv = TmpFile.with_file(content) do |filename|
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77
|
+
TSV.open(filename, :persist => true)
|
78
|
+
end
|
79
|
+
|
80
|
+
all_values = []
|
81
|
+
tsv.traverse "ValueA", :all do |k,v|
|
82
|
+
all_values.concat(v)
|
83
|
+
end
|
84
|
+
assert_include all_values.flatten, "row1"
|
85
|
+
assert_include all_values.flatten, "a"
|
86
|
+
assert_include all_values.flatten, "aaa"
|
87
|
+
|
88
|
+
all_values = []
|
89
|
+
tsv.traverse "Id", :all do |k,v|
|
90
|
+
all_values.concat(v)
|
91
|
+
end
|
92
|
+
assert_include all_values.flatten, "row1"
|
93
|
+
assert_include all_values.flatten, "a"
|
94
|
+
assert_include all_values.flatten, "aaa"
|
95
|
+
end
|
96
|
+
|
97
|
+
def test_tsv_traverse_list
|
98
|
+
content =<<-'EOF'
|
99
|
+
#: :sep=/\s+/#:type=:list
|
100
|
+
#Id ValueA ValueB OtherID
|
101
|
+
row1 a b Id1
|
102
|
+
row2 A B Id3
|
103
|
+
EOF
|
104
|
+
|
105
|
+
tsv = TmpFile.with_file(content) do |filename|
|
106
|
+
TSV.open(filename, :persist => true)
|
107
|
+
end
|
108
|
+
|
109
|
+
res = {}
|
110
|
+
tsv.traverse :key, %w(OtherID ValueB) do |k,v|
|
111
|
+
res[k] = v
|
112
|
+
end
|
113
|
+
assert_equal ["Id3", "B"], res["row2"]
|
114
|
+
|
115
|
+
res = {}
|
116
|
+
tsv.traverse :key, %w(OtherID ValueB), type: :double do |k,v|
|
117
|
+
res[k] = v
|
118
|
+
end
|
119
|
+
assert_equal [%w(Id3), %w(B)], res["row2"]
|
120
|
+
|
121
|
+
res = {}
|
122
|
+
tsv.traverse :key, %w(OtherID ValueB), type: :flat do |k,v|
|
123
|
+
res[k] = v
|
124
|
+
end
|
125
|
+
assert_equal %w(Id3 B), res["row2"]
|
126
|
+
end
|
127
|
+
|
128
|
+
def test_tsv_traverse_single
|
129
|
+
content =<<-'EOF'
|
130
|
+
#: :sep=/\s+/#:type=:single
|
131
|
+
#Id ValueA
|
132
|
+
row1 a
|
133
|
+
row2 A
|
134
|
+
EOF
|
135
|
+
|
136
|
+
tsv = TmpFile.with_file(content) do |filename|
|
137
|
+
TSV.open(filename, :persist => true)
|
138
|
+
end
|
139
|
+
|
140
|
+
res = {}
|
141
|
+
tsv.traverse "ValueA", %w(Id) do |k,v|
|
142
|
+
res[k] = v
|
143
|
+
end
|
144
|
+
assert_equal "row1", res["a"]
|
145
|
+
|
146
|
+
res = {}
|
147
|
+
tsv.traverse "ValueA", %w(Id), type: :double do |k,v|
|
148
|
+
res[k] = v
|
149
|
+
end
|
150
|
+
assert_equal [["row1"]], res["a"]
|
151
|
+
end
|
152
|
+
|
153
|
+
def test_traverse_reorder_one2one
|
154
|
+
content =<<-'EOF'
|
155
|
+
#: :sep=" "
|
156
|
+
#ID ValueA ValueB
|
157
|
+
row1 A1|A11 B1|B11
|
158
|
+
row2 A2|A22 B2|B22
|
159
|
+
EOF
|
160
|
+
|
161
|
+
tsv = TmpFile.with_file(content) do |filename|
|
162
|
+
TSV.open(filename, :persist => true)
|
163
|
+
end
|
164
|
+
|
165
|
+
res = {}
|
166
|
+
tsv.traverse "ValueA", one2one: true do |k,v|
|
167
|
+
res[k] = v
|
168
|
+
end
|
169
|
+
|
170
|
+
assert_include res["A2"][0], "row2"
|
171
|
+
|
172
|
+
end
|
173
|
+
|
174
|
+
def test_traverse_select
|
175
|
+
content =<<-'EOF'
|
176
|
+
#: :sep=" "
|
177
|
+
#ID ValueA ValueB
|
178
|
+
row1 A1|A11 B1|B11
|
179
|
+
row2 A2|A22 B2|B22
|
180
|
+
EOF
|
181
|
+
|
182
|
+
TmpFile.with_file(content) do |filename|
|
183
|
+
tsv = TSV.open(filename, :persist => true, select: "B1")
|
184
|
+
|
185
|
+
assert_equal %w(row1), tsv.keys
|
186
|
+
|
187
|
+
tsv = TSV.open(filename, :persist => true, select: "B2")
|
188
|
+
|
189
|
+
assert_equal %w(row2), tsv.keys
|
190
|
+
|
191
|
+
tsv = TSV.open(filename, :persist => true, select: "B1")
|
192
|
+
|
193
|
+
assert_equal %w(row1), tsv.keys
|
194
|
+
|
195
|
+
tsv = TSV.open(filename, :persist => true, select: "B2")
|
196
|
+
|
197
|
+
assert_equal %w(row2), tsv.keys
|
198
|
+
end
|
7
199
|
end
|
8
200
|
end
|
9
201
|
|
data/test/scout/tsv/test_util.rb
CHANGED
@@ -0,0 +1,24 @@
|
|
1
|
+
require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
|
2
|
+
require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
|
3
|
+
|
4
|
+
require 'scout/tsv'
|
5
|
+
class TestTSVUtil < Test::Unit::TestCase
|
6
|
+
def test_open_persist
|
7
|
+
content =<<-'EOF'
|
8
|
+
#: :sep=/\s+/#:type=:double#:merge=:concat
|
9
|
+
#Id ValueA ValueB OtherID
|
10
|
+
row1 a|aa|aaa b Id1|Id2
|
11
|
+
row2 A B Id3
|
12
|
+
row2 a a id3
|
13
|
+
EOF
|
14
|
+
|
15
|
+
tsv = TmpFile.with_file(content) do |filename|
|
16
|
+
TSV.open(filename, :sep => " " )
|
17
|
+
end
|
18
|
+
assert_equal %w(row1 row2), tsv.collect{|k,v| k }
|
19
|
+
assert NamedArray === tsv.collect{|k,v| v }.first
|
20
|
+
assert "row1", tsv["row1"].key
|
21
|
+
end
|
22
|
+
|
23
|
+
end
|
24
|
+
|
@@ -0,0 +1,188 @@
|
|
1
|
+
require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
|
2
|
+
require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
|
3
|
+
|
4
|
+
require 'scout/tsv'
|
5
|
+
class TestTSVFilters < Test::Unit::TestCase
|
6
|
+
def test_collect
|
7
|
+
content1 =<<-EOF
|
8
|
+
#: :sep=/\\s+/#:case_insensitive=false
|
9
|
+
#Id ValueA ValueB
|
10
|
+
row1 a|aa|aaa b
|
11
|
+
row2 A B
|
12
|
+
EOF
|
13
|
+
|
14
|
+
TmpFile.with_file(content1) do |filename|
|
15
|
+
tsv = TSV.open filename
|
16
|
+
assert_equal 2, tsv.collect.size
|
17
|
+
tsv.filter
|
18
|
+
tsv.add_filter "field:ValueA", ["A"]
|
19
|
+
assert_equal 1, tsv.collect.size
|
20
|
+
end
|
21
|
+
end
|
22
|
+
|
23
|
+
def test_through
|
24
|
+
content1 =<<-EOF
|
25
|
+
#: :sep=/\\s+/#:case_insensitive=false
|
26
|
+
#Id ValueA ValueB
|
27
|
+
row1 a|aa|aaa b
|
28
|
+
row2 A B
|
29
|
+
EOF
|
30
|
+
|
31
|
+
TmpFile.with_file(content1) do |filename|
|
32
|
+
tsv = TSV.open filename
|
33
|
+
tsv.filter
|
34
|
+
tsv.add_filter "field:ValueA", ["A"]
|
35
|
+
elem = []
|
36
|
+
tsv.through do |k,v| elem << k end
|
37
|
+
assert_equal 1, elem.size
|
38
|
+
end
|
39
|
+
end
|
40
|
+
|
41
|
+
def test_2_filters
|
42
|
+
content1 =<<-EOF
|
43
|
+
#: :sep=/\\s+/#:case_insensitive=false
|
44
|
+
#Id ValueA ValueB
|
45
|
+
row1 a|aa|aaa b
|
46
|
+
row2 A B
|
47
|
+
row3 A C
|
48
|
+
EOF
|
49
|
+
|
50
|
+
TmpFile.with_file(content1) do |filename|
|
51
|
+
tsv = TSV.open filename
|
52
|
+
tsv.filter
|
53
|
+
tsv.add_filter "field:ValueA", ["A"]
|
54
|
+
|
55
|
+
elem = []
|
56
|
+
tsv.through do |k,v| elem << k end
|
57
|
+
assert_equal 2, elem.size
|
58
|
+
assert_equal ["row2", "row3"], elem.sort
|
59
|
+
|
60
|
+
tsv.add_filter "field:ValueB", ["C"]
|
61
|
+
|
62
|
+
elem = []
|
63
|
+
tsv.through do |k,v| elem << k end
|
64
|
+
assert_equal 1, elem.size
|
65
|
+
end
|
66
|
+
end
|
67
|
+
|
68
|
+
def test_filter_persistence
|
69
|
+
content1 =<<-EOF
|
70
|
+
#: :sep=/\\s+/#:case_insensitive=false
|
71
|
+
#Id ValueA ValueB
|
72
|
+
row1 a|aa|aaa b
|
73
|
+
row2 A B
|
74
|
+
row3 A C
|
75
|
+
EOF
|
76
|
+
|
77
|
+
TmpFile.with_file(content1) do |filename|
|
78
|
+
tsv = TSV.open filename
|
79
|
+
tsv.filter
|
80
|
+
tsv.add_filter "field:ValueA", ["A"], tmpdir.fieldValueA.find(:user)
|
81
|
+
|
82
|
+
elem = []
|
83
|
+
tsv.through do |k,v| elem << k end
|
84
|
+
assert_equal 2, elem.size
|
85
|
+
|
86
|
+
tsv.add_filter "field:ValueB", ["C"]
|
87
|
+
|
88
|
+
elem = []
|
89
|
+
tsv.through do |k,v| elem << k end
|
90
|
+
assert_equal 1, elem.size
|
91
|
+
|
92
|
+
tsv = TSV.open filename
|
93
|
+
tsv.filter
|
94
|
+
tsv.add_filter "field:ValueA", ["A"], tmpdir.fieldValueA.find(:user)
|
95
|
+
|
96
|
+
elem = []
|
97
|
+
tsv.through do |k,v| elem << k end
|
98
|
+
assert_equal 2, elem.size
|
99
|
+
end
|
100
|
+
end
|
101
|
+
|
102
|
+
def __test_filter_persistence_update
|
103
|
+
content1 =<<-EOF
|
104
|
+
#: :sep=/\\s+/#:case_insensitive=false
|
105
|
+
#Id ValueA ValueB
|
106
|
+
row1 a|aa|aaa b
|
107
|
+
row2 A B
|
108
|
+
EOF
|
109
|
+
|
110
|
+
TmpFile.with_file(content1) do |filename|
|
111
|
+
tsv = TSV.open filename
|
112
|
+
tsv.filter
|
113
|
+
tsv.add_filter "field:ValueA", ["A"], Scout.tmp.test.Filter.fieldValueA.find(:user)
|
114
|
+
|
115
|
+
elem = []
|
116
|
+
tsv.through do |k,v| elem << k end
|
117
|
+
assert_equal 1, elem.size
|
118
|
+
|
119
|
+
tsv["row3"] = [["A"], ["C"]]
|
120
|
+
|
121
|
+
elem = []
|
122
|
+
tsv.through do |k,v| elem << k end
|
123
|
+
assert_equal 2, elem.size
|
124
|
+
|
125
|
+
tsv.add_filter "field:ValueB", ["C"]
|
126
|
+
|
127
|
+
elem = []
|
128
|
+
tsv.through do |k,v| elem << k end
|
129
|
+
assert_equal 1, elem.size
|
130
|
+
|
131
|
+
tsv = TSV.open filename
|
132
|
+
tsv.filter
|
133
|
+
tsv.add_filter "field:ValueA", ["A"], Scout.tmp.test.Filter.fieldValueA.find(:user)
|
134
|
+
|
135
|
+
elem = []
|
136
|
+
tsv.through do |k,v| elem << k end
|
137
|
+
assert_equal 1, elem.size
|
138
|
+
end
|
139
|
+
end
|
140
|
+
|
141
|
+
def test_delete
|
142
|
+
content =<<-EOF
|
143
|
+
#ID ValueA ValueB Comment
|
144
|
+
row1 a b c
|
145
|
+
row2 A B C
|
146
|
+
EOF
|
147
|
+
|
148
|
+
TmpFile.with_file(content) do |filename|
|
149
|
+
tsv = TSV.open(File.open(filename), type: :double, :sep => /\s/)
|
150
|
+
assert_equal 2, tsv.keys.length
|
151
|
+
tsv.delete "row2"
|
152
|
+
assert_equal 1, tsv.keys.length
|
153
|
+
|
154
|
+
tsv = TSV.open(File.open(filename), type: :double, :sep => /\s/)
|
155
|
+
tsv.filter
|
156
|
+
tsv.add_filter "field:ValueA", ["A"]
|
157
|
+
|
158
|
+
assert_equal 1, tsv.keys.length
|
159
|
+
assert_equal ["row2"], tsv.keys
|
160
|
+
|
161
|
+
tsv.delete "row2"
|
162
|
+
assert_equal 0, tsv.keys.length
|
163
|
+
|
164
|
+
tsv.pop_filter
|
165
|
+
assert_equal ["row1"], tsv.keys
|
166
|
+
end
|
167
|
+
end
|
168
|
+
|
169
|
+
def test_filename
|
170
|
+
content1 =<<-EOF
|
171
|
+
#: :sep=/\\s+/#:case_insensitive=false
|
172
|
+
#Id ValueA ValueB
|
173
|
+
row1 a|aa|aaa b
|
174
|
+
row2 A B
|
175
|
+
EOF
|
176
|
+
|
177
|
+
TmpFile.with_file(content1) do |filename|
|
178
|
+
tsv = TSV.open filename
|
179
|
+
tsv.filter
|
180
|
+
tsv.add_filter "field:ValueA", ["A"]
|
181
|
+
assert tsv.filename =~ /ValueA/
|
182
|
+
tsv.pop_filter
|
183
|
+
assert tsv.filename !~ /ValueA/
|
184
|
+
end
|
185
|
+
|
186
|
+
end
|
187
|
+
end
|
188
|
+
|
@@ -0,0 +1,47 @@
|
|
1
|
+
require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
|
2
|
+
require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
|
3
|
+
|
4
|
+
require 'scout/tsv'
|
5
|
+
class TestTSVProcess < Test::Unit::TestCase
|
6
|
+
def test_process
|
7
|
+
content =<<-'EOF'
|
8
|
+
#: :sep=/\s+/#:type=:double
|
9
|
+
#Id ValueA ValueB OtherID
|
10
|
+
row1 a|aa|aaa b Id1|Id2
|
11
|
+
row2 A B Id3
|
12
|
+
row2 AA BB Id33
|
13
|
+
EOF
|
14
|
+
|
15
|
+
tsv = TmpFile.with_file(content) do |filename|
|
16
|
+
TSV.open(filename)
|
17
|
+
end
|
18
|
+
|
19
|
+
tsv.process "ValueA" do |v|
|
20
|
+
v.collect{|e| e.upcase }
|
21
|
+
end
|
22
|
+
|
23
|
+
assert_equal %w(A AA AAA), tsv["row1"][0]
|
24
|
+
end
|
25
|
+
|
26
|
+
def test_add_field
|
27
|
+
content =<<-'EOF'
|
28
|
+
#: :sep=/\s+/#:type=:double
|
29
|
+
#Id ValueA ValueB OtherID
|
30
|
+
row1 a|aa|aaa b Id1|Id2
|
31
|
+
row2 A B Id3
|
32
|
+
row2 AA BB Id33
|
33
|
+
EOF
|
34
|
+
|
35
|
+
tsv = TmpFile.with_file(content) do |filename|
|
36
|
+
TSV.open(filename)
|
37
|
+
end
|
38
|
+
|
39
|
+
tsv.add_field "ValueC" do |k,v|
|
40
|
+
v[0].collect{|e| e.gsub("a", "c").gsub("A", "C") }
|
41
|
+
end
|
42
|
+
|
43
|
+
assert_equal %w(c cc ccc), tsv["row1"]["ValueC"]
|
44
|
+
assert_equal %w(C CC), tsv["row2"]["ValueC"]
|
45
|
+
end
|
46
|
+
end
|
47
|
+
|