scout-essentials 1.6.0 → 1.6.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 24500b0c2c21f23844c3eb87ce87ed1ea4fd6f0e9ee635ef474b29d919baffdf
-  data.tar.gz: b54836819a0a394bf3b2907d641b6ae34b7b4c4b9ced9b2dd0b78b3d22d30cc9
+  metadata.gz: a682bf691d2d27784726f6eb108223abc0cc62a3a289f5580ef3ec9a850daffa
+  data.tar.gz: ac4409c3954aeaa68bfb45844de8701c265b3e896fbe77bb51dfae953ad47035
 SHA512:
-  metadata.gz: 12c4740363f2e5d64e3c3f691dfa0ca6086617d84a82b666d25d683e0d0e36c3fe062bcc3f210b3c38358a0a36f0b1a2ab6b3c7c6628a9b74fa4ebb2b92afb1e
-  data.tar.gz: 86df3be0b64051d8aa0007d061f181f281835a241c1cbeeb113dd53d0595b0c52adf7bfa269b91c70bdf2233c0fef7b0ca3064c3763fb2a49e5ca3f6e7e0d5ad
+  metadata.gz: a9db53026e267d734499b85a2673933c43a7e549497fa76420872dff237fb2858da535fcd654c30153f5b78e4afc9568b884db0ca656f70f1a936d89cff570ab
+  data.tar.gz: 6868e8baf1d445bfc2aeebee9a0e0cb0c0f9e481e41ef87f3c670d2f9b628445fb8502b7a27a39decb445dabd4ff571145562f16fd0b477ae426d63e1a23d61b

data/.vimproject

@@ -50,6 +50,7 @@ scout-essentials=/$PWD filter="*.rb *.txt *.md *.conf *.yaml" {
     find.rb
     tmpfile.rb
     util.rb
+    digest.rb
    }
    concurrent_stream.rb
    cmd.rb
@@ -59,6 +60,7 @@ scout-essentials=/$PWD filter="*.rb *.txt *.md *.conf *.yaml" {
     remote.rb
     stream.rb
     util.rb
+    bgzf.rb
    }
    resource.rb
    resource=resource{

data/VERSION

@@ -1 +1 @@
-1.6.0
+1.6.2

data/lib/scout/misc/digest.rb

@@ -1,5 +1,6 @@
 module Misc
   MAX_ARRAY_DIGEST_LENGTH = 100_000
+
   def self.digest_str(obj)
     if obj.respond_to?(:digest_str)
       obj.digest_str

data/lib/scout/misc/math.rb

@@ -106,4 +106,17 @@ module Misc
     sd = Misc.sd(list)
     (e.to_f - m) / sd
   end
+
+  def self.softmax(array)
+		# Compute the exponentials of the input array elements
+		exp_array = array.map { |x| Math.exp(x) }
+
+		# Sum of all exponentials
+		sum_exp = exp_array.sum
+
+		# Compute the softmax values by dividing each exponential by the sum of exponentials
+		softmax_array = exp_array.map { |x| x / sum_exp }
+
+		return softmax_array
+	end
 end

data/lib/scout/misc/monitor.rb

@@ -1,5 +1,6 @@
 module Misc
   def self.pid_alive?(pid)
+    return true if Process.pid == pid
     !! Process.kill(0, pid) rescue false
   end
 

data/lib/scout/named_array.rb

@@ -84,9 +84,18 @@ module NamedArray
 
 
   def concat(other)
-    super(other)
-    self.fields.concat(other.fields) if NamedArray === other
-    self
+    if Hash === other
+      new_fields = []
+      other.each do |k,v|
+        new_fields << k
+        self << v
+      end
+      self.fields.concat(new_fields)
+    else
+      super(other)
+      self.fields.concat(other.fields) if NamedArray === other
+      self
+    end
   end
 
   def to_hash

data/lib/scout/open/util.rb

@@ -236,6 +236,7 @@ module Open
     begin
       Open.ln(source, target, options)
     rescue
+      Log.debug "Could not make regular link, trying symbolic: #{Misc.fingerprint(source)} -> #{Misc.fingerprint(target)}"
       Open.ln_s(source, target, options)
     end
     nil

data/lib/scout/path/digest.rb

@@ -0,0 +1,13 @@
+require_relative '../misc/digest'
+module Path
+  def digest_str
+    case
+    when File.directory?(self)
+      "Directory MD5: #{Misc.digest_str(Dir.glob(File.join(self, "*")))}"
+    when self.located? && File.exist?(self)
+      "File MD5: #{Misc.digest_file(self)}"
+    else
+      '\'' << self << '\''
+    end
+  end
+end

data/lib/scout/path.rb

@@ -2,6 +2,7 @@ require_relative 'annotation'
 require_relative 'path/find'
 require_relative 'path/util'
 require_relative 'path/tmpfile'
+require_relative 'path/digest'
 
 module Path
   extend Annotation

data/scout-essentials.gemspec

@@ -2,16 +2,16 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: scout-essentials 1.6.0 ruby lib
+# stub: scout-essentials 1.6.2 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "scout-essentials".freeze
-  s.version = "1.6.0".freeze
+  s.version = "1.6.2".freeze
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib".freeze]
   s.authors = ["Miguel Vazquez".freeze]
-  s.date = "2024-06-05"
+  s.date = "2024-07-01"
   s.description = "Things a scout can use anywhere".freeze
   s.email = "mikisvaz@gmail.com".freeze
   s.extra_rdoc_files = [
@@ -63,6 +63,7 @@ Gem::Specification.new do |s|
     "lib/scout/open/stream.rb",
     "lib/scout/open/util.rb",
     "lib/scout/path.rb",
+    "lib/scout/path/digest.rb",
     "lib/scout/path/find.rb",
     "lib/scout/path/tmpfile.rb",
     "lib/scout/path/util.rb",
@@ -106,6 +107,7 @@ Gem::Specification.new do |s|
     "test/scout/open/test_remote.rb",
     "test/scout/open/test_stream.rb",
     "test/scout/open/test_util.rb",
+    "test/scout/path/test_digest.rb",
     "test/scout/path/test_find.rb",
     "test/scout/path/test_util.rb",
     "test/scout/persist/test_open.rb",

data/test/scout/misc/test_math.rb

@@ -5,5 +5,11 @@ class TestMiscMath < Test::Unit::TestCase
   def test_mean
     assert_equal 4, Misc.mean([6,2])
   end
+
+  def test_softmax
+    assert_equal 0.5, Misc.softmax([1,1]).first
+    assert Misc.softmax([1,2]).first < 0.5
+    assert Misc.softmax([2,1]).first > 0.5
+  end
 end
 

data/test/scout/path/test_digest.rb

@@ -0,0 +1,20 @@
+require File.expand_path(__FILE__).sub(%r(/test/.*), '/test/test_helper.rb')
+require File.expand_path(__FILE__).sub(%r(.*/test/), '').sub(/test_(.*)\.rb/,'\1')
+
+class TestClass < Test::Unit::TestCase
+  def test_digest_path
+    TmpFile.with_path("TEXT") do |file|
+      assert_include file.digest_str, "File MD5"
+    end
+
+    TmpFile.with_path do |dir|
+      Open.write(dir.test, "TEXT")
+      assert_include dir.digest_str, "Directory"
+    end
+
+    TmpFile.with_path do |file|
+      assert_include "'#{file}'", file.digest_str
+    end
+  end
+end
+

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: scout-essentials
 version: !ruby/object:Gem::Version
-  version: 1.6.0
+  version: 1.6.2
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-06-05 00:00:00.000000000 Z
+date: 2024-07-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: shoulda
@@ -160,6 +160,7 @@ files:
 - lib/scout/open/stream.rb
 - lib/scout/open/util.rb
 - lib/scout/path.rb
+- lib/scout/path/digest.rb
 - lib/scout/path/find.rb
 - lib/scout/path/tmpfile.rb
 - lib/scout/path/util.rb
@@ -203,6 +204,7 @@ files:
 - test/scout/open/test_remote.rb
 - test/scout/open/test_stream.rb
 - test/scout/open/test_util.rb
+- test/scout/path/test_digest.rb
 - test/scout/path/test_find.rb
 - test/scout/path/test_util.rb
 - test/scout/persist/test_open.rb