sciruby 0.2.8 → 0.2.9

checksums.yaml

@@ -1,7 +1,7 @@
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-  data.tar.gz: 075752449c3fb9f5d5a979e4bdd634b217a06535
+  metadata.gz: 8f7bd683282f370896bcd92e6fbe23f38ce50b79
+  data.tar.gz: 6bca1922defd21c5e8f28e7f33ceec1334c7f5f9
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+  data.tar.gz: e2823175fbb9318028421e10c2564cda53dd0ae27c024b9e1edaa28dece40c22464062f88cabfbfbd21e0e654c0b25dab3f5cf7bcfcc5794ffabff0d9efeeab7

data/CHANGES

@@ -1,3 +1,7 @@
+0.2.9 (2016-03-05)
+
+  * Version locking
+
 0.2.8 (2015-08-24)
 
   * More gems added

data/Gemfile

@@ -2,7 +2,7 @@ load File.expand_path(File.join(__FILE__, '..', 'scripts', 'helper.rb'))
 
 source 'https://rubygems.org'
 
-Helper.sciruby_gems(true).each do |g|
+Helper.installable_gems.each do |g|
   gem(g[:name], *g[:version])
 end
 

data/gems.yml

@@ -36,11 +36,11 @@ cassowary:
   description: Incremental constraint solver
   exclude: Native dependencies
   module: Cassowary
-classifier:
+classifier-reborn:
   category: ai
   description: Machine learning
-  module: Classifier
-  version: "~> 1.3"
+  module: ClassifierReborn
+  version: "~> 2.0"
 cmath:
   category: algebra
   description: Stdlib cmath module
@@ -111,13 +111,13 @@ gsl:
   description: Bindings for the GNU scientific library
   module: GSL
   owner: sciruby
-  version: "~> 1.16.0"
+  version: "~> 2.1"
 hamster:
   category: utilities
   description: Efficient persistent data structures
   module:
   - Hamster
-  version: "~> 1.0"
+  version: "~> 3.0"
 histogram:
   category: statistics
   description: Histogram method
@@ -145,7 +145,7 @@ liblinear-ruby:
   description: Linear classifier
   module: Liblinear
   require: liblinear
-  version: "~> 0.0"
+  version: "~> 1.0"
 lpsolve:
   category: optimization
   description: Linear solver
@@ -188,7 +188,7 @@ mixed_models:
   category: statistics
   description: Fit statistical models
   module: MixedModels
-  version: "~> 0.1"
+  exclude: Bad version constraints on daru
 modshogun:
   category: ai
   description: Machine learning
@@ -207,7 +207,7 @@ nmatrix:
   - NMatrix
   - NVector
   owner: sciruby
-  version: "~> 0.1"
+  version: "~> 0.2"
 nyaplot:
   category: plotting
   description: Plotting library
@@ -228,7 +228,7 @@ omoikane:
   category: ai
   description: Machine learning
   module: Omoikane
-  version: "~> 0.0"
+  exclude: Outdated nmatrix dependency
 parallel:
   category: utilties
   description: Parallel processing
@@ -265,8 +265,8 @@ pry:
 publisci:
   category: publishing
   description: Publishing toolkit
+  exclude: Installation fails
   module: PubliSci
-  version: "~> 0.1"
 rb-libsvm:
   category: ai
   description: Support vector machines (machine learning)

data/lib/sciruby/version.rb

@@ -2,5 +2,5 @@
 module SciRuby
   # SciRuby version string
   # @api public
-  VERSION = '0.2.8'
+  VERSION = '0.2.9'
 end

data/sciruby.gemspec

@@ -15,13 +15,13 @@ Gem::Specification.new do |s|
     s.files = %w(CHANGES CONTRIBUTING.md README.md LICENSE sciruby-full.gemspec)
 
     s.add_runtime_dependency 'sciruby', "= #{SciRuby::VERSION}"
-    Helper.sciruby_gems(true).each {|gem| s.add_runtime_dependency gem[:name], *gem[:version] }
+    Helper.installed_gems.each {|gem| s.add_runtime_dependency gem[:name], *gem[:version] }
   else
     s.files = `git ls-files`.split($/)
     s.files.delete 'sciruby-full.gemspec'
 
     m = "Please consider installing 'sciruby-full' or the following gems:\n"
-    Helper.sciruby_gems(false).each {|gem| m << "  * #{gem[:name]} - #{gem[:description]}\n" }
+    Helper.all_gems.each {|gem| m << "  * #{gem[:name]} - #{gem[:description]}\n" }
     s.post_install_message = m << "\n"
   end
 end

data/scripts/helper.rb

@@ -135,9 +135,9 @@ module Helper
   end
 
   def github_name(gem)
-    return $1 if gem[:spec].homepage =~ %r{github.com/([^/]+/[^/]+)}
+    return $1.sub(/\.git$/, '') if gem[:spec].homepage =~ %r{github.com/([^/]+/[^/]+)}
     JSON.parse(Net::HTTP.get(URI("https://rubygems.org/api/v1/gems/#{gem[:name]}.json"))).each do |k,v|
-      return $1 if k =~ /_uri/ && v =~ %r{github.com/([^/]+/[^/]+)}
+      return $1.sub(/\.git$/, '') if k =~ /_uri/ && v =~ %r{github.com/([^/]+/[^/]+)}
     end
     nil
   end
@@ -146,8 +146,20 @@ module Helper
     Net::HTTP.get(URI("https://www.versioneye.com/ruby/#{name}/badge")) =~ /out of date/
   end
 
-  def sciruby_gems(exclude)
-    SciRuby.gems.each_value.sort_by {|gem| gem[:name] }.reject do |gem|
+  def installable_gems
+    filter_gems(SciRuby.gems, true)
+  end
+
+  def installed_gems
+    filter_gems(SciRuby.installed_gems, true)
+  end
+
+  def all_gems
+    filter_gems(SciRuby.gems, false)
+  end
+
+  def filter_gems(gems, exclude)
+    gems.each_value.sort_by {|gem| gem[:name] }.reject do |gem|
       gem[:owner] == 'stdlib' || %w(sciruby sciruby-full).include?(gem[:name])
     end.reject {|gem| gem[:exclude] && exclude }
   end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sciruby
 version: !ruby/object:Gem::Version
-  version: 0.2.8
+  version: 0.2.9
 platform: ruby
 authors:
 - SciRuby Development Team
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-08-24 00:00:00.000000000 Z
+date: 2016-05-03 00:00:00.000000000 Z
 dependencies: []
 description: Scientific gems for Ruby
 email:
@@ -48,7 +48,7 @@ post_install_message: |+
     * bibtex-ruby - BibTeX parser
     * bio - Bioinformatics suite
     * cassowary - Incremental constraint solver
-    * classifier - Machine learning
+    * classifier-reborn - Machine learning
     * ctioga2 - Command line tool for tioga
     * daru - Dataframe library
     * darwinning - Genetic algorithms
@@ -136,4 +136,3 @@ signing_key:
 specification_version: 4
 summary: Scientific gems for Ruby
 test_files: []
-has_rdoc: