sciruby 0.2.1 → 0.2.2

checksums.yaml

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data/CHANGES

@@ -1,3 +1,8 @@
+0.2.2 (2015-06-09)
+
+  * Add SciRuby::Gems and SciRuby.gems
+  * SciRuby libraries can be autoloaded
+
 0.2.1 (2015-06-08)
 
   * Initial release as a meta gem

data/Gemfile

@@ -1,34 +1,8 @@
-# This file specifies all gems which are installed by the `sciruby-full` gem or recommended by the `sciruby` gem.
+$: << File.join(File.dirname(__FILE__), 'lib')
+require 'sciruby'
 
 source 'https://rubygems.org'
 
-gem 'nmatrix'
-gem 'gsl-nmatrix'
-
-gem 'rubyvis'
-gem 'nyaplot'
-gem 'plotrb'
-gem 'gnuplot'
-
-gem 'iruby'
-gem 'pry'
-gem 'awesome_print'
-
-gem 'daru'
-
-gem 'integration'
-gem 'minimization'
-gem 'distribution'
-
-gem 'statsample'
-gem 'statsample-glm'
-gem 'statsample-bivariate-extension'
-#gem 'statsample-timeseries' # currently not working because of activesupport dependency
-gem 'extendmatrix'
-
-gem 'publisci'
-
-gem 'ai4r'
-
-# from the bioruby project
-gem 'bio'
+SciRuby.gems.all.each do |name, options|
+  gem name, *options[:version], require: options[:require].first
+end

data/README.rdoc

@@ -2,7 +2,6 @@
 
 Tools for Scientific Computing in Ruby
 
-* {Installation}[https://github.com/SciRuby/sciruby/wiki/Installation]
 * {Website}[http://sciruby.com]
 * {Google+}[https://plus.google.com/109304769076178160953/posts]
 * {NMatrix}[http://github.com/SciRuby/nmatrix]
@@ -13,6 +12,13 @@ Ruby has for some time had no equivalent to the beautifully constructed numpy, s
 
 We are not the first with this idea, but we are trying to bring it to life.
 
+== Installation
+
+    gem install sciruby
+    gem install sciruby-full
+
+See also the {guide in the wiki}[https://github.com/SciRuby/sciruby/wiki/Installation].
+
 == License
 
 Copyright (c) 2010 onward, The Ruby Science Foundation.

data/gems.yml

@@ -0,0 +1,63 @@
+# Specify all gems which are installed by the `sciruby-full` gem or recommended by the `sciruby` gem.
+
+nmatrix:
+  description: 'Numerical matrix library'
+  module: [NMatrix, NVector]
+gsl-nmatrix:
+  description: 'Bindings for the GNU scientific library'
+  require: gsl
+  module: GSL
+
+rubyvis:
+  description: 'Plotting library'
+nyaplot:
+  description: 'Plotting library'
+plotrb:
+  description: 'Plotting library'
+gnuplot:
+  description: 'Plotting library'
+
+iruby:
+  module: IRuby
+  description: 'Ruby kernel for Jupyter'
+pry:
+  module: Pry
+  description: 'Ruby repl'
+awesome_print:
+  module: ~
+  description: 'Pretty object printing'
+
+daru:
+  description: 'Dataframe library'
+
+integration:
+  description: 'Numerical integration'
+minimization:
+  description: 'Numerical minimization'
+distribution:
+  description: 'Statistical distributions'
+
+statsample:
+  descriptions: 'Statistics'
+statsample-glm:
+  descriptions: 'Statistics'
+  module: ~
+statsample-bivariate-extension:
+  descriptions: 'Statistics'
+  module: ~
+#statsample-timeseries: # currently not working because of activesupport dependency
+# descriptions: 'Statistics'
+# module: ~
+extendmatrix:
+  description: 'Helper methods for Matrix'
+  module: ~
+
+publisci:
+  description: 'Publishing toolkit'
+  module: PubliSci
+
+ai4r:
+  description: 'Artificial intelligence'
+
+bio:
+  description: 'Bioinformatics suite'

data/lib/sciruby.rb

@@ -1,2 +1,4 @@
+require 'yaml'
 require 'sciruby/version'
 require 'sciruby/gems'
+require 'sciruby/autoload'

data/lib/sciruby/autoload.rb

@@ -0,0 +1,13 @@
+class Module
+  alias :const_missing_without_sciruby :const_missing
+
+  def const_missing(name)
+    paths = SciRuby.gems.autoload_modules.delete(name)
+    if paths
+      paths.each {|path| require path }
+      const_get(name)
+    else
+      const_missing_without_sciruby(name)
+    end
+  end
+end

data/lib/sciruby/gems.rb

@@ -1,27 +1,55 @@
 module SciRuby
-  extend self
+  # @api public
+  class Gems
+    # Return map of all known SciRuby gems
+    attr_reader :all
 
-  def all_gems
-    @all_gems ||= File.read(File.expand_path(File.join(__FILE__, '..', '..', '..', 'Gemfile'))).scan(/^(?!#.*)gem\s+'(.*?)'/).map(&:first)
-  end
+    # Modules which can be autoloaded
+    attr_reader :autoload_modules
+
+    # Return map of all installed SciRuby gems
+    def installed
+      @installed ||=
+        begin
+          require 'rubygems'
+          Hash[all.map {|name, options| installed_gem(name, options) }.compact]
+        end
+    end
+
+    # Return list of all known SciRuby modules
+    def all_modules
+      @all_modules ||= all.map { |name, options| options[:module] }.flatten
+    end
+
+    # Return list of all installed SciRuby modules
+    def installed_modules
+      @installed_modules ||= installed.map { |name, options| options[:module] }.flatten
+    end
 
-  def installed_gems
-    @installed_gems ||=
-      begin
-        require 'rubygems'
-        Hash[all_gems.map {|name| (v = gem_version(name)) && [name, v] }.compact]
+    # Initialize gem list
+    def initialize(file)
+      @all, @autoload_modules = {}, {}
+      YAML.load_file(file).each do |name, options|
+        options = Hash[options.map {|k,v| [k.to_sym, v] }]
+        options[:require] = [*(options[:require] || name)]
+        options[:module] = name.capitalize unless options.include?(:module)
+        options[:module] = [*options[:module]].map(&:to_sym)
+        options[:module].each {|mod| @autoload_modules[mod] = options[:require] }
+        @all[name] = options
       end
-  end
+    end
 
-  def require!
-    installed_gems.each {|gem,_| require gem }
-  end
+    private
 
-  private
+    def installed_gem(name, options)
+      [name, options.merge(gem_version: Gem::Specification.find_by_name(name).version.to_s)]
+    rescue Exception
+      nil
+    end
+  end
 
-  def gem_version(name)
-    Gem::Specification.find_by_name(name).version.to_s
-  rescue Exception
-    nil
+  @gems = Gems.new(File.expand_path(File.join(__FILE__, '..', '..', '..', 'gems.yml')))
+  class << self
+    attr_reader :gems
   end
 end

data/lib/sciruby/version.rb

@@ -1,3 +1,6 @@
+# @api public
 module SciRuby
-  VERSION = '0.2.1'
+  # SciRuby version string
+  # @api public
+  VERSION = '0.2.2'
 end

data/sciruby.gemspec

@@ -24,12 +24,12 @@ Gem::Specification.new do |s|
     s.files.reject! {|f| f =~ /\Alib/ }
 
     s.add_runtime_dependency 'sciruby', "= #{SciRuby::VERSION}"
-    SciRuby.all_gems.each {|gem| s.add_runtime_dependency gem }
+    SciRuby.gems.all.each {|name, options| s.add_runtime_dependency name, *options[:version] }
   else
     s.files.delete 'sciruby-full.gemspec'
 
     m = "Please consider installing 'sciruby-full' or the following gems:\n"
-    SciRuby.all_gems.each {|gem| m << "  * #{gem}\n" }
+    SciRuby.gems.all.each {|name, options| m << "  * #{name}\n" }
     s.post_install_message = m << "\n"
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sciruby
 version: !ruby/object:Gem::Version
-  version: 0.2.1
+  version: 0.2.2
 platform: ruby
 authors:
 - SciRuby Development Team
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-06-08 00:00:00.000000000 Z
+date: 2015-06-09 00:00:00.000000000 Z
 dependencies: []
 description: Scientific gems for Ruby
 email:
@@ -23,7 +23,9 @@ files:
 - Gemfile
 - LICENSE.txt
 - README.rdoc
+- gems.yml
 - lib/sciruby.rb
+- lib/sciruby/autoload.rb
 - lib/sciruby/gems.rb
 - lib/sciruby/version.rb
 - sciruby.gemspec