sciruby 0.1.3 → 0.2.1

data/data/r/man/occupationalStatus.Rd

@@ -1,44 +0,0 @@
-% File src/library/datasets/man/occupationalStatus.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 2008 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{occupationalStatus}
-\alias{occupationalStatus}
-\docType{data}
-\title{Occupational Status of Fathers and their Sons}
-\description{
-   Cross-classification of a sample of British males according to each
-   subject's occupational status and his father's occupational status.
-}
-\usage{occupationalStatus}
-\format{
-   A \code{\link{table}} of counts, with classifying factors
-   \code{origin} (father's occupational status; levels \code{1:8})
-   and \code{destination} (son's occupational status; levels \code{1:8}).
-}
-\source{
-  Goodman, L. A. (1979)
-  Simple Models for the Analysis of Association in Cross-Classifications
-  having Ordered Categories.
-  \emph{J. Am. Stat. Assoc.}, \bold{74} (367), 537--552.
-
-  The data set has been in package \pkg{gnm} and been provided by the
-  package authors.
-}
-\examples{
-require(stats); require(graphics)
-
-plot(occupationalStatus)
-
-##  Fit a uniform association model separating diagonal effects
-Diag <- as.factor(diag(1:8))
-Rscore <- scale(as.numeric(row(occupationalStatus)), scale = FALSE)
-Cscore <- scale(as.numeric(col(occupationalStatus)), scale = FALSE)
-modUnif <- glm(Freq ~ origin + destination + Diag + Rscore:Cscore,
-               family = poisson, data = occupationalStatus)
-
-summary(modUnif)
-plot(modUnif) # 4 plots, with warning about  h_ii ~= 1
-}
-\keyword{datasets}

data/data/r/man/precip.Rd

@@ -1,31 +0,0 @@
-% File src/library/datasets/man/precip.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{precip}
-\docType{data}
-\alias{precip}
-\title{Annual Precipitation in US Cities}
-\description{
-  The average amount of precipitation (rainfall) in inches for each of
-  70 United States (and Puerto Rico) cities.
-}
-\usage{precip}
-\format{
-  A named vector of length 70.
-}
-\source{
-  Statistical Abstracts of the United States, 1975.
-}
-\references{
-  McNeil, D. R. (1977)
-  \emph{Interactive Data Analysis}.
-  New York: Wiley.
-}
-\examples{
-require(graphics)
-dotchart(precip[order(precip)], main = "precip data")
-title(sub = "Average annual precipitation (in.)")
-}
-\keyword{datasets}

data/data/r/man/presidents.Rd

@@ -1,36 +0,0 @@
-% File src/library/datasets/man/presidents.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{presidents}
-\docType{data}
-\alias{presidents}
-\title{Quarterly Approval Ratings of US Presidents}
-\description{
-  The (approximately) quarterly approval rating for the President of the
-  United states from the first quarter of 1945 to the last quarter of
-  1974.
-}
-\usage{presidents}
-\format{
-  A time series of 120 values.
-}
-\source{
-  The Gallup Organisation.
-}
-\details{
-  The data are actually a fudged version of the approval ratings.  See
-  McNeil's book for details.
-}
-\references{
-  McNeil, D. R. (1977)
-  \emph{Interactive Data Analysis}.
-  New York: Wiley.
-}
-\examples{
-require(stats); require(graphics)
-plot(presidents, las = 1, ylab = "Approval rating (\%)",
-     main = "presidents data")
-}
-\keyword{datasets}

data/data/r/man/pressure.Rd

@@ -1,41 +0,0 @@
-% File src/library/datasets/man/pressure.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{pressure}
-\docType{data}
-\alias{pressure}
-\title{Vapor Pressure of Mercury as a Function of Temperature}
-\description{
-  Data on the relation between temperature in degrees Celsius and vapor
-  pressure of mercury in millimeters (of mercury).
-}
-\usage{pressure}
-\format{
-  A data frame with 19 observations on 2 variables.
-  \tabular{rlll}{
-    [, 1] \tab temperature \tab numeric \tab temperature (deg C)\cr
-    [, 2] \tab pressure    \tab numeric \tab pressure (mm)
-  }
-}
-\source{
-  Weast, R. C., ed. (1973)
-  \emph{Handbook of Chemistry and Physics}.
-  CRC Press.
-}
-\references{
-  McNeil, D. R. (1977)
-  \emph{Interactive Data Analysis}.
-  New York: Wiley.
-}
-\examples{
-require(graphics)
-plot(pressure, xlab = "Temperature (deg C)",
-     ylab = "Pressure (mm of Hg)",
-     main = "pressure data: Vapor Pressure of Mercury")
-plot(pressure, xlab = "Temperature (deg C)",  log = "y",
-     ylab = "Pressure (mm of Hg)",
-     main = "pressure data: Vapor Pressure of Mercury")
-}
-\keyword{datasets}

data/data/r/man/quakes.Rd

@@ -1,40 +0,0 @@
-% File src/library/datasets/man/quakes.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{quakes}
-\docType{data}
-\alias{quakes}
-\title{Locations of Earthquakes off Fiji}
-\description{
-  The data set give the locations of 1000 seismic events of MB > 4.0.
-  The events occurred in a cube near Fiji since 1964.
-}
-\usage{quakes}
-\format{
-  A data frame with 1000 observations on 5 variables.
-  \tabular{rlll}{
-    [,1] \tab lat      \tab numeric \tab Latitude of event\cr
-    [,2] \tab long     \tab numeric \tab Longitude\cr
-    [,3] \tab depth    \tab numeric \tab Depth (km)\cr
-    [,4] \tab mag      \tab numeric \tab Richter Magnitude\cr
-    [,5] \tab stations \tab numeric \tab Number of stations reporting
-  }
-}
-\source{
-  This is one of the Harvard PRIM-H project data sets.  They in turn
-  obtained it from Dr. John Woodhouse, Dept. of Geophysics, Harvard
-  University.
-}
-\details{
-  There are two clear planes of seismic activity.  One is a major plate
-  junction; the other is the Tonga trench off New Zealand.  These data
-  constitute a subsample from a larger dataset of containing 5000
-  observations.
-}
-\examples{
-require(graphics)
-pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main=1.2, pch=".")
-}
-\keyword{datasets}

data/data/r/man/randu.Rd

@@ -1,46 +0,0 @@
-% File src/library/datasets/man/randu.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{randu}
-\docType{data}
-\alias{randu}
-\title{Random Numbers from Congruential Generator RANDU}
-\description{
-  400 triples of successive random numbers were taken from the VAX
-  FORTRAN function RANDU running under VMS 1.5.
-}
-\usage{randu}
-\details{
-  In three dimensional displays it is evident that the triples fall on
-  15 parallel planes in 3-space. This can be shown theoretically to be
-  true for all triples from the RANDU generator.
-
-  These particular 400 triples start 5 apart in the sequence, that is
-  they are ((U[5i+1], U[5i+2], U[5i+3]), i= 0, \dots, 399), and they
-  are rounded to 6 decimal places.
-
-  Under VMS versions 2.0 and higher, this problem has been fixed.
-}
-\format{
-  A data frame with 400 observations on 3 variables named \code{x},
-  \code{y} and \code{z} which give the first, second and third random
-  number in the triple.
-}
-\source{
-  David Donoho
-}
-\examples{
-\dontrun{## We could re-generate the dataset by the following R code
-seed <- as.double(1)
-RANDU <- function() {
-    seed <<- ((2^16 + 3) * seed) \%\% (2^31)
-    seed/(2^31)
-}
-for(i in 1:400) {
-    U <- c(RANDU(), RANDU(), RANDU(), RANDU(), RANDU())
-    print(round(U[1:3], 6))
-}}
-}
-\keyword{datasets}

data/data/r/man/rivers.Rd

@@ -1,21 +0,0 @@
-% File src/library/datasets/man/rivers.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{rivers}
-\docType{data}
-\alias{rivers}
-\title{Lengths of Major North American Rivers}
-\description{
-  This data set gives the lengths (in miles) of 141 \dQuote{major}
-  rivers in North America, as compiled by the US Geological Survey.
-}
-\usage{rivers}
-\format{A vector containing 141 observations.}
-\source{World Almanac and Book of Facts, 1975, page 406.}
-\references{
-  McNeil, D. R. (1977) \emph{Interactive Data Analysis}.
-  New York: Wiley.
-}
-\keyword{datasets}

data/data/r/man/rock.Rd

@@ -1,34 +0,0 @@
-% File src/library/datasets/man/rock.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1994-8 W. N. Venables and B. D. Ripley
-% Distributed under GPL 2 or later
-
-% Manually converted to Rd data file description format by KH.
-\name{rock}
-\docType{data}
-\alias{rock}
-\title{Measurements on Petroleum Rock Samples}
-\description{
-    Measurements on 48 rock samples from a petroleum reservoir.}
-\usage{rock}
-\format{
-    A data frame with 48 rows and 4 numeric columns.
-
-    \tabular{rll}{
-        [,1] \tab area  \tab area of pores space, in pixels
-        out of 256 by 256 \cr
-        [,2] \tab peri  \tab perimeter in pixels \cr
-        [,3] \tab shape \tab perimeter/sqrt(area) \cr
-        [,4] \tab perm  \tab permeability in milli-Darcies
-    }
-}
-\details{
-    Twelve core samples from petroleum reservoirs were sampled by 4
-    cross-sections.  Each core sample was measured for permeability, and
-    each cross-section has total area of pores, total perimeter of
-    pores, and shape.
-}
-\source{
-    Data from BP Research, image analysis by Ronit Katz, U. Oxford.
-}
-\keyword{datasets}

data/data/r/man/sleep.Rd

@@ -1,51 +0,0 @@
-% File src/library/datasets/man/sleep.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2010 R Core Development Team
-% Copyright 1999-2010 The R Foundation
-% Distributed under GPL 2 or later
-
-\name{sleep}
-\docType{data}
-\encoding{UTF-8}
-\alias{sleep}
-\title{Student's Sleep Data}
-\description{
-  Data which show the effect of two soporific drugs (increase in hours
-  of sleep compared to control) on 10 patients.
-}
-\usage{sleep}
-\format{
-  A data frame with 20 observations on 3 variables.
-  \tabular{rlll}{
-    [, 1] \tab extra \tab numeric \tab increase in hours of sleep\cr
-    [, 2] \tab group \tab factor  \tab drug given\cr
-    [, 3] \tab ID    \tab factor  \tab patient ID
-  }
-}
-\source{
-  Cushny, A. R. and Peebles, A. R. (1905)
-  The action of optical isomers: II hyoscines.
-  \emph{The Journal of Physiology} \bold{32}, 501--510.
-
-  Student (1908)
-  The probable error of the mean.
-  \emph{Biometrika}, \bold{6}, 20.
-}
-\details{
-  The \code{group} variable name may be misleading about the data:
-  They represent measurements on 10 persons, not in groups.
-  %% But we keep it (as [,2]) for back compatibility.
-}
-\references{
-  \enc{Scheffé}{Scheffe}, Henry (1959)
-  \emph{The Analysis of Variance}.
-  New York, NY: Wiley.
-}
-\examples{
-require(stats)
-## Student's paired t-test
-with(sleep,
-     t.test(extra[group == 1],
-            extra[group == 2], paired = TRUE))
-}
-\keyword{datasets}

data/data/r/man/stackloss.Rd

@@ -1,77 +0,0 @@
-% File src/library/datasets/man/stackloss.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{stackloss}
-\docType{data}
-\alias{stackloss}
-\alias{stack.loss}
-\alias{stack.x}
-\title{Brownlee's Stack Loss Plant Data}
-\description{
-  Operational data of a plant for the oxidation of ammonia to nitric
-  acid.
-}
-\usage{
-stackloss
-
-stack.x
-stack.loss
-}
-\format{
-  \code{stackloss} is a data frame with 21 observations on 4 variables.
-
-  \tabular{rll}{
-    [,1] \tab \code{Air Flow}   \tab Flow of cooling air\cr
-    [,2] \tab \code{Water Temp} \tab Cooling Water Inlet
-    Temperature\cr
-    [,3] \tab  \code{Acid Conc.} \tab Concentration of acid [per
-    1000, minus 500]\cr
-    [,4] \tab  \code{stack.loss} \tab Stack loss\cr
-  }
-
-  For compatibility with S-PLUS, the data sets \code{stack.x}, a matrix
-  with the first three (independent) variables of the data frame, and
-  \code{stack.loss}, the numeric vector giving the fourth (dependent)
-  variable, are provided as well.
-}
-\source{
-  Brownlee, K. A. (1960, 2nd ed. 1965)
-  \emph{Statistical Theory and Methodology in Science and Engineering}.
-  New York: Wiley. pp. 491--500.
-}
-\details{
-  \dQuote{Obtained from 21 days of operation of a plant for the
-    oxidation of ammonia (NH\eqn{_3}{3}) to nitric acid
-    (HNO\eqn{_3}{3}).  The nitric oxides produced are absorbed in a
-    countercurrent absorption tower}.
-  (Brownlee, cited by Dodge, slightly reformatted by MM.)
-
-  \code{Air Flow} represents the rate of operation of the plant.
-  \code{Water Temp} is the temperature of cooling water circulated
-  through coils in the absorption tower.
-  \code{Acid Conc.} is the concentration of the acid circulating, minus
-  50, times 10: that is, 89 corresponds to 58.9 per cent acid.
-  \code{stack.loss} (the dependent variable) is 10 times the percentage
-  of the ingoing ammonia to the plant that escapes from the absorption
-  column unabsorbed; that is, an (inverse) measure of the over-all
-  efficiency of the plant.
-}
-\references{
-  Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988)
-  \emph{The New S Language}.
-  Wadsworth & Brooks/Cole.
-
-  Dodge, Y. (1996)
-  The guinea pig of multiple regression. In:
-  \emph{Robust Statistics, Data Analysis, and Computer Intensive
-    Methods; In Honor of Peter Huber's 60th Birthday}, 1996,
-  \emph{Lecture Notes in Statistics} \bold{109}, Springer-Verlag, New York.
-}
-\examples{
-require(stats)
-summary(lm.stack <- lm(stack.loss ~ stack.x))
-}
-\keyword{datasets}
-

data/data/r/man/state.Rd

@@ -1,80 +0,0 @@
-% File src/library/datasets/man/state.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{state}
-\docType{data}
-\alias{state}
-\alias{state.abb}
-\alias{state.area}
-\alias{state.center}
-\alias{state.division}
-\alias{state.name}
-\alias{state.region}
-\alias{state.x77}
-\title{US State Facts and Figures}
-\description{Data sets related to the 50 states of the United States of
-  America.}
-\usage{
-state.abb
-state.area
-state.center
-state.division
-state.name
-state.region
-state.x77
-}
-\details{
-  \R currently contains the following \dQuote{state} data sets.  Note
-  that all data are arranged according to alphabetical order of the
-  state names.
-  \describe{
-    \item{\code{state.abb}:}{character vector of 2-letter abbreviations
-      for the state names.}
-    \item{\code{state.area}:}{numeric vector of state areas (in square
-      miles).}
-    \item{\code{state.center}:}{ list with components named \code{x} and
-      \code{y} giving the approximate geographic center of each state in
-      negative longitude and latitude.  Alaska and Hawaii are placed
-      just off the West Coast.}
-    \item{\code{state.division}:}{factor giving state divisions (New
-      England, Middle Atlantic, South Atlantic, East South Central, West
-      South Central, East North Central, West North Central, Mountain,
-      and Pacific).}
-    \item{\code{state.name}:}{character vector giving the full state
-      names.}
-    \item{\code{state.region}:}{factor giving the region (Northeast,
-      South, North Central, West) that each state belongs to.}
-    \item{\code{state.x77}:}{matrix with 50 rows and 8 columns giving
-      the following statistics in the respective columns.
-      \describe{
-        \item{\code{Population}:}{population estimate as of July 1,
-          1975}
-        \item{\code{Income}:}{per capita income (1974)}
-        \item{\code{Illiteracy}:}{illiteracy (1970, percent of
-          population)}
-        \item{\code{Life Exp}:}{life expectancy in years (1969--71)}
-        \item{\code{Murder}:}{murder and non-negligent manslaughter rate
-          per 100,000 population (1976)}
-        \item{\code{HS Grad}:}{percent high-school graduates (1970)}
-        \item{\code{Frost}:}{mean number of days with minimum
-          temperature below freezing (1931--1960) in capital or large
-          city}
-       \item{\code{Area}:}{land area in square miles}
-    }}
-  }
-}
-\source{
-  U.S. Department of Commerce, Bureau of the Census (1977)
-  \emph{Statistical Abstract of the United States}.
-
-  U.S. Department of Commerce, Bureau of the Census (1977)
-  \emph{County and City Data Book}.
-}
-\references{
-  Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988)
-  \emph{The New S Language}.
-  Wadsworth & Brooks/Cole.
-}
-\keyword{datasets}

data/data/r/man/sunspot.month.Rd

@@ -1,49 +0,0 @@
-% File src/library/datasets/man/sunspot.month.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{sunspot.month}
-\docType{data}
-\alias{sunspot.month}
-\title{
-  Monthly Sunspot Data, 1749--1997
-}
-\description{
-  Monthly numbers of sunspots. 
-}
-\usage{
-sunspot.month
-}
-\format{
-  The univariate time series \code{sunspot.year} and
-  \code{sunspot.month} contain 289 and 2988 observations, respectively.
-  The objects are of class \code{"ts"}.
-}
-\seealso{
-  \code{sunspot.month} is a longer version of \code{\link{sunspots}}
-  that runs until 1988 rather than 1983.
-}
-\source{
-  World Data Center-C1 For Sunspot Index
-  Royal Observatory of Belgium, Av. Circulaire, 3, B-1180 BRUSSELS
-  \url{http://www.oma.be/KSB-ORB/SIDC/sidc_txt.html}
-}
-\examples{
-require(stats); require(graphics)
-## Compare the monthly series 
-plot (sunspot.month, main = "sunspot.month [stats]", col = 2)
-lines(sunspots) # "very barely" see something
-
-## Now look at the difference :
-all(tsp(sunspots)     [c(1,3)] ==
-    tsp(sunspot.month)[c(1,3)]) ## Start & Periodicity are the same
-n1 <- length(sunspots)
-table(eq <- sunspots == sunspot.month[1:n1]) #>  132  are different !
-i <- which(!eq) 
-rug(time(eq)[i])
-s1 <- sunspots[i] ; s2 <- sunspot.month[i]
-cbind(i = i, sunspots = s1, ss.month = s2,
-      perc.diff = round(100*2*abs(s1-s2)/(s1+s2), 1))
-}
-\keyword{datasets}

data/data/r/man/sunspot.year.Rd

@@ -1,26 +0,0 @@
-% File src/library/datasets/man/sunspot.year.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{sunspot.year}
-\docType{data}
-\alias{sunspot.year}
-\title{
-  Yearly Sunspot Data, 1700--1988
-}
-\description{
-  Yearly numbers of sunspots. 
-}
-\usage{
-sunspot.year
-}
-\format{
-  The univariate time series \code{sunspot.year} contains 289
-  observations, and is of class \code{"ts"}.
-}
-\source{
-  H. Tong (1996)
-  \emph{Non-Linear Time Series}. Clarendon Press, Oxford, p. 471. 
-}
-\keyword{datasets}

data/data/r/man/sunspots.Rd

@@ -1,33 +0,0 @@
-% File src/library/datasets/man/sunspots.Rd
-% Part of the R package, http://www.R-project.org
-% Copyright 1995-2007 R Core Development Team
-% Distributed under GPL 2 or later
-
-\name{sunspots}
-\docType{data}
-\alias{sunspots}
-\title{Monthly Sunspot Numbers, 1749--1983}
-\description{
-  Monthly mean relative sunspot numbers from 1749 to 1983.  Collected at
-  Swiss Federal Observatory, Zurich until 1960, then Tokyo Astronomical
-  Observatory.
-}
-\usage{sunspots}
-\format{
-  A time series of monthly data from 1749 to 1983.
-}
-\source{
-  Andrews, D. F. and Herzberg, A. M. (1985)
-  \emph{Data: A Collection of Problems from Many Fields for the
-    Student and Research Worker}.
-  New York: Springer-Verlag.
-}
-\seealso{
-  \code{\link{sunspot.month}} has a longer (and a bit different) series.
-} 
-\examples{
-require(graphics)
-plot(sunspots, main = "sunspots data", xlab = "Year",
-     ylab = "Monthly sunspot numbers")
-}
-\keyword{datasets}