sciruby-full 0.2.4 → 0.2.5

checksums.yaml

@@ -1,7 +1,7 @@
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data/CHANGES

@@ -1,3 +1,8 @@
+0.2.5 (2015-06-13)
+
+  * More gems added
+  * Support for autoloading qualified modules A::B
+
 0.2.4 (2015-06-10)
 
   * Tests added

data/CONTRIBUTING.md

@@ -6,13 +6,14 @@ This guide covers way in which you can contribute.
 
 There are various ways in which you can improve SciRuby. Coding and documentation are the two primary possibilities and participate in the [mailing list][mailing-list] -- suggesting ideas and changes is very important!
 
-Apart from adding features and functionality, you can also create tests (we use RSpec), guides on how to do something using SciRuby, document the libraries and help find and fix bugs.
+Apart from adding features and functionality, you can also create tests, guides on how to do something using SciRuby, document the libraries and help find and fix bugs.
 
-Start by visiting our [issue tracker](https://github.com/SciRuby/sciruby/issues?state=open) if you want to start contributing, there's probably something with which you can help.
+Start by visiting our [issue tracker](https://github.com/SciRuby/sciruby/issues?state=open) and the
+[status list of the various gems](http://gems.sciruby.com). If you want to start contributing, there's probably something with which you can help.
 
 ## Projects
 
-SciRuby is an umbrella for many other projects in Ruby. There's not much hierarchy or anything, but we believe that the most important one at the time is [NMatrix][nmatrix], as it's very hard to create some scientific library that doesn't need a good numerical linear algebra library to deal with vectors and matrices.
+SciRuby is an umbrella for many other projects in Ruby. The most important one at the time is [NMatrix][nmatrix], as it's very hard to create some scientific library that doesn't need a good numerical linear algebra library to deal with vectors and matrices.
 
 So, the SciRuby subprojects are, in no particular order:
 
@@ -21,6 +22,7 @@ So, the SciRuby subprojects are, in no particular order:
 - [Distribution][distribution]: Diverse statistical distributions. Uses C (statistics2/GSL) or Java extensions when available.
 - [Integration][integration]: Integration methods.
 - [Minimization][minimization]: Various minimization algorithms in pure Ruby.
+- [IRuby][iruby]: Ruby kernel for the IPython/Jupyter notebook
 
 ## Documentation
 
@@ -43,4 +45,5 @@ Before commiting any code, you *MUST* read our [Contributor Agreement](http://gi
 [distribution]: https://github.com/SciRuby/distribution
 [integration]: https://github.com/SciRuby/integration
 [minimization]: https://github.com/SciRuby/minimization
+[iruby]: https://github.com/SciRuby/iruby
 [rdoc]: http://rdoc.rubyforge.org/

data/README.md

@@ -4,34 +4,40 @@ Tools for Scientific Computing in Ruby
 
 * [Website](http://sciruby.com)
 * [NMatrix](http://github.com/SciRuby/nmatrix)
-* [List of gems](https://minad.github.io/sciruby-gems)
-* [Travis-CI](https://travis-ci.org/SciRuby/sciruby)
+* [List of scientific gems](http://gems.sciruby.com)
+* [Travis CI](https://travis-ci.org/SciRuby/sciruby)
 
 ## Description
 
-This gem acts as a meta gem which provides collects multiple scientific gems, including numeric and visualization libraries.
+This gem acts as a meta gem which provides collects multiple [scientific gems](http://gems.sciruby.com), including numeric and visualization libraries.
 
 ## Getting started
 
 Installation:
 
-    gem install sciruby
-    gem install sciruby-full
+~~~
+gem install sciruby
+gem install sciruby-full
+~~~
 
 If you want to have a full-blown installation, install `sciruby-full`.
 
 Start a notebook server:
 
-    iruby notebook
+~~~
+iruby notebook
+~~~
 
 Enter commands:
 
-    require 'sciruby'
-    # Scientific gems are auto loaded, you can use them directly!
-    plot = Nyaplot::Plot.new
-    sc = plot.add(:scatter, [0,1,2,3,4], [-1,2,-3,4,-5])
+~~~ ruby
+require 'sciruby'
+# Scientific gems are auto loaded, you can use them directly!
+plot = Nyaplot::Plot.new
+sc = plot.add(:scatter, [0,1,2,3,4], [-1,2,-3,4,-5])
+~~~
 
-Take a look at [gems.yml](gems.yml) or the [list of gems](https://minad.github.io/sciruby-gems) for interesting gems which are included in `sciruby-full`.
+Take a look at [gems.yml](gems.yml) or the [list of gems](http://gems.sciruby.com) for interesting gems which are included in `sciruby-full`.
 
 ## License
 

data/sciruby-full.gemspec

@@ -1,3 +1,27 @@
-::SCIRUBY_FULL = true
-file = File.expand_path(File.join(__FILE__, '..', 'sciruby.gemspec'))
-eval(File.read(file), TOPLEVEL_BINDING, file)
+require File.expand_path(File.join(__FILE__, '..', 'scripts', 'helper.rb'))
+
+Gem::Specification.new do |s|
+  s.name        = __FILE__.sub('.gemspec', '')
+  s.date        = Date.today.to_s
+  s.version     = SciRuby::VERSION
+  s.authors     = ['SciRuby Development Team']
+  s.email       = ['sciruby-dev@googlegroups.com']
+  s.license     = 'BSD'
+  s.homepage    = 'http://sciruby.com'
+  s.summary     =
+  s.description = "Scientific gems for Ruby#{__FILE__ =~ /full/ ? ' (Full installation)' : ''}"
+
+  if __FILE__ =~ /full/
+    s.files = %w(CHANGES CONTRIBUTING.md README.md LICENSE sciruby-full.gemspec)
+
+    s.add_runtime_dependency 'sciruby', "= #{SciRuby::VERSION}"
+    Helper.sciruby_gems(true).each {|gem| s.add_runtime_dependency gem[:name], *gem[:version] }
+  else
+    s.files = `git ls-files`.split($/)
+    s.files.delete 'sciruby-full.gemspec'
+
+    m = "Please consider installing 'sciruby-full' or the following gems:\n"
+    Helper.sciruby_gems(false).each {|gem| m << "  * #{gem[:name]} - #{gem[:description]}\n" }
+    s.post_install_message = m << "\n"
+  end
+end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sciruby-full
 version: !ruby/object:Gem::Version
-  version: 0.2.4
+  version: 0.2.5
 platform: ruby
 authors:
 - SciRuby Development Team
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-06-10 00:00:00.000000000 Z
+date: 2015-06-21 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: sciruby
@@ -16,14 +16,14 @@ dependencies:
     requirements:
     - - '='
       - !ruby/object:Gem::Version
-        version: 0.2.4
+        version: 0.2.5
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
-        version: 0.2.4
+        version: 0.2.5
 - !ruby/object:Gem::Dependency
   name: ai4r
   requirement: !ruby/object:Gem::Requirement
@@ -66,6 +66,34 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '1.6'
+- !ruby/object:Gem::Dependency
+  name: bibsync
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+- !ruby/object:Gem::Dependency
+  name: bibtex-ruby
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '4.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '4.0'
 - !ruby/object:Gem::Dependency
   name: bio
   requirement: !ruby/object:Gem::Requirement
@@ -206,6 +234,34 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '2.6'
+- !ruby/object:Gem::Dependency
+  name: gruff
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.6'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.6'
+- !ruby/object:Gem::Dependency
+  name: histogram
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.2'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.2'
 - !ruby/object:Gem::Dependency
   name: integration
   requirement: !ruby/object:Gem::Requirement
@@ -234,6 +290,48 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '0.2'
+- !ruby/object:Gem::Dependency
+  name: liblinear-ruby
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+- !ruby/object:Gem::Dependency
+  name: measurable
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+- !ruby/object:Gem::Dependency
+  name: mikon
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
 - !ruby/object:Gem::Dependency
   name: minimization
   requirement: !ruby/object:Gem::Requirement
@@ -276,6 +374,48 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '0.1'
+- !ruby/object:Gem::Dependency
+  name: omoikane
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.0'
+- !ruby/object:Gem::Dependency
+  name: parallel
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.6'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.6'
+- !ruby/object:Gem::Dependency
+  name: phys-units
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.9'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.9'
 - !ruby/object:Gem::Dependency
   name: plotrb
   requirement: !ruby/object:Gem::Requirement
@@ -509,3 +649,4 @@ signing_key:
 specification_version: 4
 summary: Scientific gems for Ruby (Full installation)
 test_files: []
+has_rdoc: