scicom 0.2.0-java

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Files changed (56) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +674 -0
  3. data/README.md +66 -0
  4. data/README.md~ +290 -0
  5. data/Rakefile +51 -0
  6. data/config.rb +163 -0
  7. data/doc/PypeR.pdf +0 -0
  8. data/doc/Stat 133 Class Notes (Phil Spector).pdf +29905 -45
  9. data/doc/The R interface.docx +0 -0
  10. data/lib/JRubyR/as_mdarray.rb +60 -0
  11. data/lib/JRubyR/attributes.rb +74 -0
  12. data/lib/JRubyR/dataframe.rb +35 -0
  13. data/lib/JRubyR/environment.rb +60 -0
  14. data/lib/JRubyR/function.rb +61 -0
  15. data/lib/JRubyR/index.rb +278 -0
  16. data/lib/JRubyR/list.rb +56 -0
  17. data/lib/JRubyR/list_orig.rb +111 -0
  18. data/lib/JRubyR/logical_value.rb +56 -0
  19. data/lib/JRubyR/rbsexp.rb +386 -0
  20. data/lib/JRubyR/renjin.rb +431 -0
  21. data/lib/JRubyR/ruby_classes.rb +58 -0
  22. data/lib/JRubyR/sequence.rb +56 -0
  23. data/lib/JRubyR/vector.rb +493 -0
  24. data/lib/env.rb +12 -0
  25. data/lib/rinruby.rb +795 -0
  26. data/lib/scicom.rb +29 -0
  27. data/target/helper.jar +0 -0
  28. data/test/baseball.csv +1 -0
  29. data/test/env.rb +7 -0
  30. data/test/test_R_interface.rb +165 -0
  31. data/test/test_array.rb +191 -0
  32. data/test/test_attributes.rb +261 -0
  33. data/test/test_basic.rb +156 -0
  34. data/test/test_column-major.rb +114 -0
  35. data/test/test_complete.rb +49 -0
  36. data/test/test_creation.rb +299 -0
  37. data/test/test_dataframe.rb +248 -0
  38. data/test/test_distribution.rb +320 -0
  39. data/test/test_double_assign.rb +240 -0
  40. data/test/test_double_receive.rb +106 -0
  41. data/test/test_environment.rb +57 -0
  42. data/test/test_factor.rb +285 -0
  43. data/test/test_functions.rb +67 -0
  44. data/test/test_linear_model.rb +64 -0
  45. data/test/test_list.rb +220 -0
  46. data/test/test_matrix.rb +205 -0
  47. data/test/test_mdarray.rb +258 -0
  48. data/test/test_operators.rb +227 -0
  49. data/test/test_sequence.rb +63 -0
  50. data/test/test_subsetting.rb +67 -0
  51. data/test/test_tmp.rb +67 -0
  52. data/test/test_vector.rb +227 -0
  53. data/vendor/Renjin.pdf +0 -0
  54. data/vendor/renjin-script-engine-0.7.0-RC7-SNAPSHOT-jar-with-dependencies.jar +0 -0
  55. data/version.rb +2 -0
  56. metadata +196 -0
@@ -0,0 +1,63 @@
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+ # -*- coding: utf-8 -*-
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+
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+ ##########################################################################################
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+ # Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
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+ # and distribute this software and its documentation, without fee and without a signed
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+ # licensing agreement, is hereby granted, provided that the above copyright notice, this
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+ # paragraph and the following two paragraphs appear in all copies, modifications, and
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+ # distributions.
9
+ #
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+ # IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
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+ # INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
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+ # THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
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+ # POSSIBILITY OF SUCH DAMAGE.
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+ #
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+ # RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
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+ # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
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+ # SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
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+ # RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
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+ # OR MODIFICATIONS.
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+ ##########################################################################################
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+
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+ require 'rubygems'
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+ require "test/unit"
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+ require 'shoulda'
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+
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+ require 'env'
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+ require 'scicom'
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+
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+ class SciComTest < Test::Unit::TestCase
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+
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+ context "R environment" do
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+
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+ #======================================================================================
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+ #
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+ #======================================================================================
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+
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+ setup do
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+
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+ # creating a new instance of Renjin
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+ @r1 = R.new
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+
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+ end
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+
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+ #======================================================================================
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+ #
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+ #======================================================================================
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+
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+ should "create an int sequence" do
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+
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+ seq = R.seq(2, 10)
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+
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+ res = R.eval <<EOF
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+ print(#{seq.r});
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+ print(#{seq.r});
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+ print(ls());
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+
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+ EOF
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+
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+ end
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+
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+ end
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+
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+ end
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+ # -*- coding: utf-8 -*-
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+
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+ ##########################################################################################
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+ # Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
5
+ # and distribute this software and its documentation, without fee and without a signed
6
+ # licensing agreement, is hereby granted, provided that the above copyright notice, this
7
+ # paragraph and the following two paragraphs appear in all copies, modifications, and
8
+ # distributions.
9
+ #
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+ # IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
11
+ # INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
12
+ # THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
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+ # POSSIBILITY OF SUCH DAMAGE.
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+ #
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+ # RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
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+ # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
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+ # SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
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+ # RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
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+ # OR MODIFICATIONS.
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+ ##########################################################################################
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+
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+ require 'rubygems'
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+ require "test/unit"
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+ require 'shoulda'
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+
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+ require 'env'
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+ require 'scicom'
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+
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+ class SciComTest < Test::Unit::TestCase
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+
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+ context "R Vectors" do
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+
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+ #--------------------------------------------------------------------------------------
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+ #
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+ #--------------------------------------------------------------------------------------
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+
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+ setup do
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+
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+ end
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+
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+
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+ #--------------------------------------------------------------------------------------
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+ #
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+ #--------------------------------------------------------------------------------------
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+
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+ should "slice a vector in multiple ways" do
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+
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+ vec = R.c(1, 2, 3, 4)
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+
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+ # access a given vector index
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+ assert_equal(3, vec[3].gz)
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+
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+ # Method .gt gets the thruth value of the first element of the array
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+ # Vector with negative index: all values are returned but the ones in the index
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+ assert_equal(true, (R.c(1, 2, 4).eq vec[-3]).gt)
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+
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+ # New vector in the given range
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+ assert_equal(true, (R.c(1, 2, 3).eq vec[(1..3)]).gt)
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+
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+
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+ vec[-(1..3)].pp
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+
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+ end
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+
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+ end
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+
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+ end
data/test/test_tmp.rb ADDED
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+ # -*- coding: utf-8 -*-
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+
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+ ##########################################################################################
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+ # Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
5
+ # and distribute this software and its documentation, without fee and without a signed
6
+ # licensing agreement, is hereby granted, provided that the above copyright notice, this
7
+ # paragraph and the following two paragraphs appear in all copies, modifications, and
8
+ # distributions.
9
+ #
10
+ # IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
11
+ # INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
12
+ # THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
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+ # POSSIBILITY OF SUCH DAMAGE.
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+ #
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+ # RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
16
+ # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
17
+ # SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
18
+ # RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
19
+ # OR MODIFICATIONS.
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+ ##########################################################################################
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+
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+ require 'rubygems'
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+ require "test/unit"
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+ require 'shoulda'
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+
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+ require 'env'
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+ require 'scicom'
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+
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+ class SciComTest < Test::Unit::TestCase
30
+
31
+ context "R environment" do
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+
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+ #--------------------------------------------------------------------------------------
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+ #
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+ #--------------------------------------------------------------------------------------
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+
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+ setup do
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+
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+ # create a list with named elements
40
+ @x = R.list(first: (1..10), second: R.c("yes","no"), third: R.c(TRUE,FALSE),
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+ fourth: R.gl(2,3))
42
+
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+ @seq = R.c((1..10))
44
+ @seq2 = R.c((1...10))
45
+ @str_vec = R.c("yes", "no")
46
+ @str_vec2 = R.c("yes", "yes")
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+ @trth_vec = R.c(TRUE, FALSE)
48
+ @trth_vec2 = R.c(FALSE, FALSE)
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+ @gl = R.gl(2, 3)
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+
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+ end
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+
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+ #--------------------------------------------------------------------------------------
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+ #
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+ #--------------------------------------------------------------------------------------
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+
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+ should "assign to a character vector" do
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+
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+ h = {f: :colnames, index: [[1]]}
60
+ p h[:f]
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+ p h[:index]
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+
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+ end
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+
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+ end
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+
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+ end
@@ -0,0 +1,227 @@
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+ # -*- coding: utf-8 -*-
2
+
3
+ ##########################################################################################
4
+ # Copyright © 2013 Rodrigo Botafogo. All Rights Reserved. Permission to use, copy, modify,
5
+ # and distribute this software and its documentation, without fee and without a signed
6
+ # licensing agreement, is hereby granted, provided that the above copyright notice, this
7
+ # paragraph and the following two paragraphs appear in all copies, modifications, and
8
+ # distributions.
9
+ #
10
+ # IN NO EVENT SHALL RODRIGO BOTAFOGO BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL,
11
+ # INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF
12
+ # THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF RODRIGO BOTAFOGO HAS BEEN ADVISED OF THE
13
+ # POSSIBILITY OF SUCH DAMAGE.
14
+ #
15
+ # RODRIGO BOTAFOGO SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
16
+ # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE
17
+ # SOFTWARE AND ACCOMPANYING DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS IS".
18
+ # RODRIGO BOTAFOGO HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
19
+ # OR MODIFICATIONS.
20
+ ##########################################################################################
21
+
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+ require 'rubygems'
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+ require "test/unit"
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+ require 'shoulda'
25
+
26
+ require 'env'
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+ require 'scicom'
28
+
29
+ class SciComTest < Test::Unit::TestCase
30
+
31
+ context "R Vectors" do
32
+
33
+ #--------------------------------------------------------------------------------------
34
+ #
35
+ #--------------------------------------------------------------------------------------
36
+
37
+ setup do
38
+
39
+ end
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+
41
+ #--------------------------------------------------------------------------------------
42
+ #
43
+ #--------------------------------------------------------------------------------------
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+
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+ should "create vectors of different types" do
46
+
47
+ # double vector
48
+ dbl_var = R.c(1, 2.5, 4.5)
49
+ assert_equal(2.5, dbl_var[2].gz)
50
+ assert_equal("double", dbl_var.typeof.gz)
51
+ assert_equal(3, dbl_var.length)
52
+ assert_equal(false, dbl_var.integer?)
53
+ assert_equal(true, dbl_var.double?)
54
+ assert_equal(true, dbl_var.numeric?)
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+
56
+ # int vector: with the R.i, you get an integer rather than a double
57
+ int_var = R.c(R.i(1), R.i(6), R.i(10))
58
+ assert_equal("integer", int_var.typeof.gz)
59
+ assert_equal(3, int_var.length)
60
+ assert_equal(true, int_var.integer?)
61
+
62
+ # logical vector: Use TRUE and FALSE to create logical vectors
63
+ log_var = R.c(TRUE, FALSE, TRUE, FALSE)
64
+ assert_equal("logical", log_var.typeof.gz)
65
+ assert_equal(4, log_var.length)
66
+ assert_equal(true, log_var.logical?)
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+
68
+ # string vector: create string (character) vectors
69
+ chr_var = R.c("these are", "some strings")
70
+ assert_equal("character", chr_var.typeof.gz)
71
+ assert_equal(2, chr_var.length)
72
+ assert_equal(true, chr_var.character?)
73
+ assert_equal(true, chr_var.atomic?)
74
+ assert_equal(false, chr_var.numeric?)
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+
76
+ # complex vector
77
+ comp_var = R.c(R.complex(real: 2, imaginary: 1), R.complex(real: 0, imaginary: 1))
78
+ assert_equal("complex", comp_var.typeof.gz)
79
+ assert_equal(2, comp_var.length)
80
+ assert_equal(false, comp_var.integer?)
81
+ assert_equal(false, comp_var.double?)
82
+ assert_equal(true, comp_var.complex?)
83
+ assert_equal(1, comp_var[2].im.gz)
84
+
85
+ ## create a complex normal vector
86
+ z = R.complex(real: R.rnorm(100), imaginary: R.rnorm(100))
87
+
88
+ end
89
+
90
+ #--------------------------------------------------------------------------------------
91
+ #
92
+ #--------------------------------------------------------------------------------------
93
+
94
+ should "create vectors with basic R functions" do
95
+
96
+ # R.c "flattens" the vectors
97
+ v1 = R.c(1, R.c(2, R.c(3, 4)))
98
+ assert_equal(true, (R.c(1, 2, 3, 4).eq v1).gt)
99
+
100
+ # R.rep repeats the given vector
101
+ vec2 = R.rep(R.c("A", "B", "C"), 3)
102
+ assert_equal(true, (R.c("A", "B", "C", "A", "B", "C", "A", "B", "C").eq vec2).gt)
103
+
104
+ # R.table calculates the frequencies of elements
105
+ vec3 = R.c("A", "B", "C", "A", "A", "A", "A", "B", "B")
106
+ table = R.table(vec3)
107
+ assert_equal(true, (R.c(R.i(5), R.i(3), R.i(1)) == table).gt)
108
+
109
+ # Ruby does not allow the ":" notation such as "1:3", this can be obtained
110
+ # by Ruby's range notation (1..3) or (1...3)
111
+ # does not include the last element
112
+ v2 = R.c((1...3))
113
+ assert_equal(true, (R.c(1, 2) == v2).gt)
114
+
115
+ # includes the last element
116
+ v3 = R.c((1..3))
117
+ assert_equal(true, (R.c(1, 2, 3) == v3).gt)
118
+
119
+ end
120
+
121
+ #--------------------------------------------------------------------------------------
122
+ #
123
+ #--------------------------------------------------------------------------------------
124
+
125
+ should "access vector elements" do
126
+
127
+ i1 = R.i(10)
128
+ # In R, and with SciCom vectors, indexing a vector returns a vector. First index for
129
+ # vector is 1 and not 0 as it is usual with Ruby, this is so, in order to be
130
+ # consistent with R.
131
+ i3 = i1[1]
132
+ assert_equal(true, (i3 == i1).gt)
133
+
134
+ # double vector
135
+ dbl_var = R.c(1, 2.5, 4.5)
136
+ assert_equal(2.5, dbl_var[2].gz)
137
+ assert_equal(4.5, dbl_var[3].gz)
138
+
139
+ # indexing a vector outside of bound returns NA
140
+ assert_equal(NA, dbl_var[4].gz)
141
+
142
+ end
143
+
144
+ #--------------------------------------------------------------------------------------
145
+ #
146
+ #--------------------------------------------------------------------------------------
147
+
148
+ should "assign to a numeric vector" do
149
+
150
+ # assign to a given vector index
151
+ vec = R.c(1, 2, 3)
152
+ vec[1] = 0
153
+ assert_equal(true, (R.c(0, 2, 3) == vec).gt)
154
+
155
+ # assign to a vector slice
156
+ vec[R.c(1, 2)] = R.c(5, 6)
157
+ assert_equal(true, (R.c(5, 6, 3) == vec).gt)
158
+
159
+ end
160
+
161
+ #--------------------------------------------------------------------------------------
162
+ #
163
+ #--------------------------------------------------------------------------------------
164
+
165
+ should "assign to a character vector" do
166
+
167
+ vec = R.c("a", "b", "c")
168
+ vec[1] = "d"
169
+ assert_equal(true, (R.c("d", "b", "c").eq vec).gt)
170
+
171
+ # assign to a vector slice
172
+ vec[R.c(1, 2)] = R.c("e", "f")
173
+ assert_equal(true, (R.c("e", "f", "c").eq vec).gt)
174
+
175
+ end
176
+
177
+ #--------------------------------------------------------------------------------------
178
+ #
179
+ #--------------------------------------------------------------------------------------
180
+
181
+ should "match two vectors with %in%" do
182
+
183
+ vec1 = R.c(1, 2, 3, 4)
184
+ vec2 = R.c(1, 2, 3, 4)
185
+ vec3 = R.c(3, 4, 5)
186
+ vec4 = R.c(4, 5, 6, 7)
187
+
188
+ # R has functions defined with '%%' notation. In order to access those functions
189
+ # from SciCom we use the '._' method with two arguments, the first argument is the
190
+ # name of the function, for instance, function %in%, the name of the method is ':in'
191
+ # Ex: vec1 %in% vec2 => vec1._ :in, vec2
192
+ (vec1._ :in, vec2).pp
193
+ (vec1._ :in, vec3).pp
194
+ (vec2._ :in, vec4).pp
195
+
196
+ end
197
+
198
+ #--------------------------------------------------------------------------------------
199
+ #
200
+ #--------------------------------------------------------------------------------------
201
+
202
+ should "Apply a Function over a List or Vector" do
203
+
204
+ x = R.list(a: (1..10), beta: R.exp(-3..3), logic: R.c(TRUE,FALSE,FALSE,TRUE))
205
+ x.pp
206
+ # compute the list mean for each list element
207
+ mean = R.lapply(x, "mean")
208
+ mean.pp
209
+
210
+ # median and quartiles for each list element
211
+ # quant = R.lapply(x, "quantile")
212
+ # quant = R.sapply(x, "quantile")
213
+ # quant.pp
214
+ # R.eval("x <- lapply(#{x.r}, quantile, c(0.25, 0.50, 0.75))")
215
+ # R.eval("print(x)")
216
+
217
+ # list of vectors
218
+ i39 = R.sapply((3..9), "seq")
219
+ i39.pp
220
+ sap = R.sapply(i39, "fivenum")
221
+ sap.pp
222
+
223
+ end
224
+
225
+ end
226
+
227
+ end
data/vendor/Renjin.pdf ADDED
Binary file
data/version.rb ADDED
@@ -0,0 +1,2 @@
1
+ $gem_name = "scicom"
2
+ $version="0.2.0"
metadata ADDED
@@ -0,0 +1,196 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: scicom
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.2.0
5
+ platform: java
6
+ authors:
7
+ - Rodrigo Botafogo
8
+ autorequire:
9
+ bindir: bin
10
+ cert_chain: []
11
+ date: 2014-11-16 00:00:00.000000000 Z
12
+ dependencies:
13
+ - !ruby/object:Gem::Dependency
14
+ name: shoulda
15
+ version_requirements: !ruby/object:Gem::Requirement
16
+ requirements:
17
+ - - '>='
18
+ - !ruby/object:Gem::Version
19
+ version: '0'
20
+ requirement: !ruby/object:Gem::Requirement
21
+ requirements:
22
+ - - '>='
23
+ - !ruby/object:Gem::Version
24
+ version: '0'
25
+ prerelease: false
26
+ type: :runtime
27
+ - !ruby/object:Gem::Dependency
28
+ name: simplecov
29
+ version_requirements: !ruby/object:Gem::Requirement
30
+ requirements:
31
+ - - '>='
32
+ - !ruby/object:Gem::Version
33
+ version: 0.7.1
34
+ requirement: !ruby/object:Gem::Requirement
35
+ requirements:
36
+ - - '>='
37
+ - !ruby/object:Gem::Version
38
+ version: 0.7.1
39
+ prerelease: false
40
+ type: :development
41
+ - !ruby/object:Gem::Dependency
42
+ name: yard
43
+ version_requirements: !ruby/object:Gem::Requirement
44
+ requirements:
45
+ - - '>='
46
+ - !ruby/object:Gem::Version
47
+ version: 0.8.5.2
48
+ requirement: !ruby/object:Gem::Requirement
49
+ requirements:
50
+ - - '>='
51
+ - !ruby/object:Gem::Version
52
+ version: 0.8.5.2
53
+ prerelease: false
54
+ type: :development
55
+ - !ruby/object:Gem::Dependency
56
+ name: kramdown
57
+ version_requirements: !ruby/object:Gem::Requirement
58
+ requirements:
59
+ - - '>='
60
+ - !ruby/object:Gem::Version
61
+ version: 1.0.1
62
+ requirement: !ruby/object:Gem::Requirement
63
+ requirements:
64
+ - - '>='
65
+ - !ruby/object:Gem::Version
66
+ version: 1.0.1
67
+ prerelease: false
68
+ type: :development
69
+ description: "SciCom (Scientific Computing) for Ruby brings the power of R to the\
70
+ \ Ruby community. SciCom \nis based on Renjin, a JVM-based interpreter for the R\
71
+ \ language for statistical computing.\n\nR on the JVM\n------------\n\nOver the\
72
+ \ past two decades, the R language for statistical computing has emerged as the\
73
+ \ de \nfacto standard for analysts, statisticians, and scientists. Today, a wide\
74
+ \ range of \nenterprises – from pharmaceuticals to insurance – depend on R for key\
75
+ \ business uses. Renjin \nis a new implementation of the R language and environment\
76
+ \ for the Java Virtual Machine (JVM),\nwhose goal is to enable transparent analysis\
77
+ \ of big data sets and seamless integration with \nother enterprise systems such\
78
+ \ as databases and application servers.\n\nRenjin is still under development, but\
79
+ \ it is already being used in production for a number \nof client projects, and\
80
+ \ supports most CRAN packages, including some with C/Fortran \ndependencies.\n\n\
81
+ SciCom and Renjin\n-----------------\n\nSciCom integrates with Renjin and allows\
82
+ \ the use of R inside a Ruby script. In a sense, \nSciCom is similar to other solutions\
83
+ \ such as RinRuby, Rpy2, PipeR, etc. However, since \nSciCom and Renjin both target\
84
+ \ the JVM there is no need to integrate both solutions and \nthere is no need to\
85
+ \ send data between Ruby and R, as it all resides in the same JVM. \nFurther, installation\
86
+ \ of SciCom does not require the installation of GNU R; Renjin is the \ninterpreter\
87
+ \ and comes with SciCom. Finally, although SciCom provides a basic interface to\
88
+ \ \nRenjin similar to RinRuby, a much tighter integration is also possible.\n"
89
+ email: rodrigo.a.botafogo@gmail.com
90
+ executables: []
91
+ extensions: []
92
+ extra_rdoc_files: []
93
+ files:
94
+ - Rakefile
95
+ - version.rb
96
+ - config.rb
97
+ - lib/env.rb
98
+ - lib/rinruby.rb
99
+ - lib/scicom.rb
100
+ - lib/JRubyR/list.rb
101
+ - lib/JRubyR/vector.rb
102
+ - lib/JRubyR/attributes.rb
103
+ - lib/JRubyR/as_mdarray.rb
104
+ - lib/JRubyR/logical_value.rb
105
+ - lib/JRubyR/sequence.rb
106
+ - lib/JRubyR/environment.rb
107
+ - lib/JRubyR/list_orig.rb
108
+ - lib/JRubyR/ruby_classes.rb
109
+ - lib/JRubyR/function.rb
110
+ - lib/JRubyR/index.rb
111
+ - lib/JRubyR/rbsexp.rb
112
+ - lib/JRubyR/renjin.rb
113
+ - lib/JRubyR/dataframe.rb
114
+ - test/env.rb
115
+ - test/test_tmp.rb
116
+ - test/test_attributes.rb
117
+ - test/test_complete.rb
118
+ - test/test_column-major.rb
119
+ - test/test_double_assign.rb
120
+ - test/test_double_receive.rb
121
+ - test/test_distribution.rb
122
+ - test/test_creation.rb
123
+ - test/test_array.rb
124
+ - test/test_sequence.rb
125
+ - test/test_environment.rb
126
+ - test/test_functions.rb
127
+ - test/test_basic.rb
128
+ - test/test_vector.rb
129
+ - test/test_mdarray.rb
130
+ - test/test_subsetting.rb
131
+ - test/test_factor.rb
132
+ - test/test_R_interface.rb
133
+ - test/test_operators.rb
134
+ - test/test_linear_model.rb
135
+ - test/test_matrix.rb
136
+ - test/test_dataframe.rb
137
+ - test/test_list.rb
138
+ - test/baseball.csv
139
+ - doc/PypeR.pdf
140
+ - doc/The R interface.docx
141
+ - doc/Stat 133 Class Notes (Phil Spector).pdf
142
+ - vendor/renjin-script-engine-0.7.0-RC7-SNAPSHOT-jar-with-dependencies.jar
143
+ - vendor/Renjin.pdf
144
+ - target/helper.jar
145
+ - README.md
146
+ - README.md~
147
+ - LICENSE.txt
148
+ homepage: http://github.com/rbotafogo/scicom/wiki
149
+ licenses:
150
+ - GPL
151
+ metadata: {}
152
+ post_install_message:
153
+ rdoc_options: []
154
+ require_paths:
155
+ - lib
156
+ required_ruby_version: !ruby/object:Gem::Requirement
157
+ requirements:
158
+ - - '>='
159
+ - !ruby/object:Gem::Version
160
+ version: '0'
161
+ required_rubygems_version: !ruby/object:Gem::Requirement
162
+ requirements:
163
+ - - '>='
164
+ - !ruby/object:Gem::Version
165
+ version: '0'
166
+ requirements: []
167
+ rubyforge_project:
168
+ rubygems_version: 2.1.9
169
+ signing_key:
170
+ specification_version: 4
171
+ summary: Scientific Computing for Ruby
172
+ test_files:
173
+ - test/env.rb
174
+ - test/test_tmp.rb
175
+ - test/test_attributes.rb
176
+ - test/test_complete.rb
177
+ - test/test_column-major.rb
178
+ - test/test_double_assign.rb
179
+ - test/test_double_receive.rb
180
+ - test/test_distribution.rb
181
+ - test/test_creation.rb
182
+ - test/test_array.rb
183
+ - test/test_sequence.rb
184
+ - test/test_environment.rb
185
+ - test/test_functions.rb
186
+ - test/test_basic.rb
187
+ - test/test_vector.rb
188
+ - test/test_mdarray.rb
189
+ - test/test_subsetting.rb
190
+ - test/test_factor.rb
191
+ - test/test_R_interface.rb
192
+ - test/test_operators.rb
193
+ - test/test_linear_model.rb
194
+ - test/test_matrix.rb
195
+ - test/test_dataframe.rb
196
+ - test/test_list.rb