scbi_fastq 0.0.15 → 0.0.16

data/History.txt

@@ -1,3 +1,7 @@
+=== 0.0.16 2012-06-13
+
+Class method to_fastq saves with phred qualities
+
 === 0.0.15 2012-05-24
 
 Uses default qual when no qual is present

data/lib/scbi_fastq/fastq_file.rb

@@ -171,15 +171,15 @@ class FastqFile
     res << ("+#{seq_name} #{comments}")
 
     if !seq_qual.empty?
-      if @qual_to_phred
+      # if @qual_to_phred
         if seq_qual.is_a?(Array)
           res<<(seq_qual.map{|e| (e+33).chr}.join)
         else
           res<<(seq_qual.split(/\s+/).map{|e| (e.to_i+33).chr}.join)
         end
-      else
-        res << seq_qual
-      end
+      # else
+      #   res << seq_qual
+      # end
     else # no qual provided, use a default value
       q='D'*seq_fasta.length;
       res << q

data/lib/scbi_fastq.rb

@@ -3,5 +3,5 @@ $:.unshift(File.dirname(__FILE__)) unless
 
 require 'scbi_fastq/fastq_file'
 module ScbiFastq
-   VERSION = '0.0.15'
+   VERSION = '0.0.16'
 end

metadata

@@ -2,7 +2,7 @@
 name: scbi_fastq
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.0.15
+  version: 0.0.16
 platform: ruby
 authors: 
 - Dario Guerrero
@@ -10,7 +10,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2012-05-24 00:00:00 Z
+date: 2012-06-13 00:00:00 Z
 dependencies: 
 - !ruby/object:Gem::Dependency 
   name: hoe
@@ -71,7 +71,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
 requirements: []
 
 rubyforge_project: scbi_fastq
-rubygems_version: 1.7.2
+rubygems_version: 1.8.24
 signing_key: 
 specification_version: 3
 summary: scbi_fastq is a ruby gem to read/write FASTQ files (DNA/RNA sequences) with qualities in a variety of formats (Sanger, Solexa, Ilumina).